RNA id: XM_007244714.3


Basic Information

Item Value
RNA id XM_007244714.3
length 2524
RNA type mRNA
GC content 0.43
exon number 6
gene id dcps
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8666496 ~ 8673111 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTCAGGTTGTGATTGGCTGCTTGGGGCGCTGAGAGTGATGGCGGCAATGCAGGAGAGTGAGGCGAAGCGGCTGAGGCGAGACTCCGGTACCGGTAATGGGGCTGCAGCTGGGGAGGGAGAGGACCCGGCTCTACACAGCCCCGTGTCCGGCTTCACCACGGAGCGGGTCCTGCGCGACTCGGCGCGGGAGAAAACCCTCTTTGTCCACGGGAAGATAGATGACCAGGAGGCCATTGTTATACTGGAGAAGACTCCAATCAGACAAGACACTGTGGACGAAATGTTGAAGACCAGCACTCTGAAACTAGAGATGAAAAATGACATCTACAGCACCTACCAGCTTCAAGCACCTGCTCATCTGAACGAAATCAAGACCACTGTAATCTGCCCAGCAACTGAGAAGCATGTAAAGAAATACCTTCGTCAGGAGACTTTCCTGATTGAAGAGTCGGGAGATGATTACACTGCCATTACTCTTCCCTACATAAGCAGCCAAAGCTTCAGTGTCCAGTGGGTGTACAACATCTTGGAAAAGAAAGCTGAGGCTGACCGGATCATTTTTGAAGACCCTGACCCTAATATTGGTTTTGTCCTGCTGCCAGATTTCAAATGGGACCAGAAGCAgcttcATGACTTGTATTTGATAGCTATTGTACACCGAAAGGACAGAAAGAGTTTGAGGGATCTCACATCAGATGACCTCCCACTACTAAAAAACATCCAGGAAAAGGGACAGGAGGCCATTAAGAAGCAGTATGGAGTCCCTCCGAGTAAACTGCGAGTGTATCTGCACTACCAGCCTTCCTACTACCACCTCCACGTCCACTTCACCTCTCTGGAGTACGATGCTCCTGGCTCTGGAGTGGAGAGAGCCCACCTGCTGTCCGACGTCATCCAGAACCTGCAGGCCGACTCCCAGTACTACTCCAGTCGAACCATCACATTCCCACTGTGTGCAGATAACGCACTGCTGCTCAGGTTTAAAGAGGCTGGCAAGCTCTAGGATATGCCTGTTGGACTGTCTTgccttttttattacatttttctatttgtttttattacatttccaACAGTTTATACAGTCACAAATATTAAGCTACTCTCCCATATTTAGATTAATGGTTTGTACGTCCATATTGTCTgaccatatacagtacaggcccaaagtttggacacaccttgcattttctttattttcattactatttacattgtagattctcacagaaggcatcaaaactatgaatgaacacatgtggagttttatgtacttaacgaAAAATGGcctgacctccacagtcaccggacctgaacccaatccagattgtttggggtgagctggagcacagagtgaagaaggctcCTTCAAGACTTTCCTtcaatgatgccaagagtgtgcaaagcagtaatcagagcaaagggtggctatttagaagaaactagaatataaaacattttttgttaagtgagaatctacaatgtaaattgtaaatttttggcctgtactgtatgtcttAGGTGTGTGAATGCACTGAAACATAATATTGCAATGCAGATACATGGACCCCACATGGATCCAGCCCTTCAATTACAGGCTCAAAAACCTTAAAGTCTGTACTAGAGACTGAACCCATGTtcgtgtgtttgttacattgtatactgtacatttggCCCAGTTAGATTTGGTTTCCCGCCCTTTTTTTTATGTGAGCACATATTAAAGATTTTTGCTACATACGCTCATCGAAATCTCCTATGTTGGCTGGTCCTCCCTAAAGTTCACATTGTTTGCTTGATTTTTTCAGTTAAGAGAGCTGCCTTTCCAGGATTTAAATTTTCTGGCTCCTTACCAGAATCATGCTCCCTTCAATTTCAGTCTGAATTTGGTGCAACACcctttctttgtcttcttctattgtttaataggtGGCAGCCTGATAGCCTGCCTCAACCTTCAGTTATTGGTCTAACAGTTTGAATTATCTAGGAAAAGTACTTCTACTCTGCAGACAAACCAAACCatagttcagttcattttttaaTCTGCACTGAGAGCACCTCTTCAGATTTTGGTCTTTCGGCACCTTTCACATTAGCTATTTTTGTTTGGACCCAACTGAATAATCCAAAGGTCTGGAACAAACAAGGTAGGTTTAAAAGAACCGTGAAACATCAGTGAAGTCTTGTGGGGTGTTTCCAGTCAGTACCAGCAAAACATTAATGAGTTTCATGGAGTCCTTACATCACAATTTACAAGAAGACTGCAGATATCTTGTGGAGTCTGTTATTTAAAAGATCAGAGCAGTTTTGGTGACATAAATGGGACCTacacaaaattaggcaggtgcttTTTAATGTTATACATAATGATACATCATGGTGTAAACATGGATAGCTGTGTTTTGCAGTTTTTACTTGAactatttgtaatattttattaaactgatCTTGTTTATTGCGTTTTGCGATGTTTATGAAACAGTTTTGTTCTGTATcttgttaataaaatattgattcaTTAA

Function

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K12584 DCPS, DCS; m7GpppX diphosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236222 lncRNA upstream 7954 8655524 ~ 8658542 (+) True G174438
TU236202 lncRNA upstream 103631 8562510 ~ 8562865 (+) True G174424
TU236172 lncRNA upstream 167545 8498455 ~ 8498951 (+) True G174408
TU236120 lncRNA upstream 435879 8230308 ~ 8230617 (+) True G174366
TU236008 lncRNA upstream 499834 8158038 ~ 8166662 (+) True acer3
TU236379 lncRNA downstream 419330 9092441 ~ 9094096 (+) True G174559
TU236396 lncRNA downstream 453597 9126708 ~ 9153133 (+) True rexo2
TU236397 lncRNA downstream 453597 9126708 ~ 9151066 (+) False rexo2
TU236399 lncRNA downstream 467038 9140149 ~ 9141298 (+) True LOC111195017
XR_002651415.1 lncRNA downstream 467286 9140397 ~ 9141221 (+) False LOC111195017
XM_007244715.2 mRNA upstream 9443 8646882 ~ 8657053 (+) True foxred1
XM_007244718.3 mRNA upstream 20371 8636585 ~ 8646125 (+) True stt3a
XM_007244719.3 mRNA upstream 31549 8623211 ~ 8634947 (+) True ei24
XM_022681014.1 mRNA upstream 63749 8587681 ~ 8602747 (+) False LOC103036350
XM_007244713.3 mRNA downstream 5128 8678239 ~ 8683951 (+) True kcnj1
XM_007244712.3 mRNA downstream 144476 8817587 ~ 9090793 (+) True kirrel3
XM_022681522.1 mRNA downstream 463844 9136955 ~ 9150078 (+) False rexo2
XM_022681020.1 mRNA downstream 533441 9206552 ~ 9313383 (+) True LOC103036746
XM_022681021.1 mRNA downstream 533441 9206552 ~ 9313383 (+) False LOC103036746
TU236173 other upstream 113887 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 741056 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 2125364 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 3482719 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 3762851 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 2159057 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2159057 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 2756760 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 3235761 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 3235761 11908872 ~ 11913456 (+) False G175108

Expression Profile