RNA id: XM_007244715.2


Basic Information

Item Value
RNA id XM_007244715.2
length 2642
RNA type mRNA
GC content 0.48
exon number 11
gene id foxred1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8646882 ~ 8657053 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGCAGTGAGCACGGTGTGTGAGTGTAGGGAGCAGCAGTGTTCTGATTCTGGGATCAGATTCTGTGATATCTGACTGAAGGCAGGATGAGGGGGTACCCGGTCCTGATTAGGACCCTCTCCGGTCCCGCACACCGAGCTCTGACCCACAGAACCGGCCCGACACCCCGCCGCAGCTTCAGCACCAGCCCCCGCGCCCGCAAAGACTACTTCCAAGATCTAGAGAACCAGTTTAAAGCATTCAGAGACAAAGCAACAGCAGCGATGCCCGGCAGTGACTGGAGCCCCATCCAGCTGAACCCGGGCCTCCCTCCTGAGCGAGCAGATATAGTCATCGTGGGAGGCGGGGTGATCGGCTGGTCCGTCGCCTACTGgctgaagaagaaagagagggtCCGAGATGGTGTGAGGGTCCTGCTGGTCGAGAAGGACCCCAGTtattcCCAGGCCTCCACTGTGCTGTCGGCTGGAGGAATCCGGCAGCAGTTTTCCCTGAAGGAGAACATCCTGCTCTCTCTGGCCTCGGCAGATTTCATGaagaatataaatGAACATCTCGGAGTGGTGAATGAAGATCCGGTGGATTTGCAGTTTAACCATTCGGGTTACTTATTCCTGGCGAATGAAAATGTAGCACATATTATGGAGGAGAATTATGTGACCCAGAgAGATCTTGGGGCGAAAGTGGCCCTCCTGTCACCAACCCAGCTAAAGGAGAGATTCCCCTGGATAAACACGGATGATGTAGCGCTGGCCTCGTATGGGCTGGAGAACGAAGGCTGGTTTGACCCTTGGACGCTGTTGAACGCTTTCCGCCGCAAGGCCTTGTCTATGGGAGTCTACCAGTGCTTTGGAGAAGTCACAGGGTTCACATGTTCTACTCAGACAGCAGAAACCACAGAtggagaaatgttaaatgtgaaaaggataaaatacattaatGTGCGGATGCCCAACAGTTTGGAATACCAGCCTGTGGAGTGTGCGGTGGTAATAAATGCAGCTGGAGCTGGATCAGGGAAAATTGCAGAGATGGTCGGCATTGGAAAGGGCCCAGAACACTCTGTGGCTTCCGTTCCATTACCTGTGGAACCAAGAAAGAGATATGTTTATGTGGTGCATTGCCCAGACGGACCAGGCCTAGAATGTCCGTTTTTGATCGATTATTCAGGAGTTTACTTTAGACGAGAGGGACTCGGAGGAAATTACATCGCAGGGAAGTCCCCAGAGGAGGCAGAAGAACCGGACGTCAGTGACCTGGAAGTGGACCATGAGTTTTTTCAGGAGAAGGTCTGGCCCCTCTTATGCCACCGGGTTCCTTCCTTTGAGCGTCTAAAGgtATCCTCAGCATGGGCAGGATTTTATGATTACAACACGTTTGACCAGAATGCGATCGTGGGAGTGCATCCGCTCGTCAACAACATGTTCCACGCCACAGGGTTCAGCGGTCACGGGTTACAGCAGTCCCCCGCTGTCGGCCGCGCCGTGGCCGAGCTCGTCCTGGACGGTGATTTCAAAACCATTGACCTCAGTGCCTTCGACCTTAGGCGCCTTATATACCAGGAGCCGGTCCTGGAGAACAACATAGTATGAGTAGGACTGAATGGAGGATACTGAATTTAGTGGGTACTGATAGAGTATAAATTGgaattaaatgagtttttttaaaaaagctccgtTCATCAGGAAATCAAAGAATTCACTGTgatttcagtcattttggttCATTCTTAAAGTGTGAGATCATCAGTGTTCTACAAGCAAGGTCTCGTAATGAGTGGCAATCCATTTCCTCCATCAGAGTGCAGTGACCGCCCACAGGTTAAGTTTTAATGATTGTGACTCGTGGAATcaggctagaactgtccatgctaACAGGCGAGAAAGACCCTTGTGTCTCTGTTAACACTTCAACACCGAACACAGCTCCTTATGTGGACTTGGGAGGTTGCTAAGATGGACCCTAGAGAACCTGATAACtatagggctgcatgatattggtaAAAATTTGACAttgccatgtttttttgtttttttccgaTGATATATATcgtaatattaaacaatgcaggacccgTGACGCCACCAGCCTCATCCCCAACTGCGCGCTGTTTCACTTCAGAGATCCAGACCGACCAAGAGCTGAGTAAGAGCCGATCACTCAAAACCAGAGAaaagcagcaaaacaacaatattctgccctttaatcaggcatttaaattggctttttatattaaatcattttattttcttggattaaaagcgtgatttggactgtaactggaaatatctgcgcaaaactgtgccaAACATCGTCCCTCTGCCTGTAGAATTTATGCTTTGTCGAGTTGCTGCACGTGGCCGGGCTAGAGAGGGTCCTATACGATACTAGTTcttgtcccgtgacttttggcgtgtctatgtgtatgtgtatatttttgtatatatactgtacattcagttatatattatacagtataatttgGGGGCTACAATGCAATGGATTTTCAGGTTATTAGCTCATTGGCTATTTTATCGAAAACTCAAAACAGCACCACACACTACATGCCATGATCAGGTTGGTATTACAGCGAGCCAACTCCCATATAATATTGTAGGGGAAAGTGGGTGTGGCTTAGAATG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K18166 FOXRED1; FAD-dependent oxidoreductase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236202 lncRNA upstream 84017 8562510 ~ 8562865 (+) True G174424
TU236172 lncRNA upstream 147931 8498455 ~ 8498951 (+) True G174408
TU236120 lncRNA upstream 416265 8230308 ~ 8230617 (+) True G174366
TU236008 lncRNA upstream 480220 8158038 ~ 8166662 (+) True acer3
TU235966 lncRNA upstream 582081 8006273 ~ 8064801 (+) True G174263
TU236379 lncRNA downstream 435388 9092441 ~ 9094096 (+) True G174559
TU236396 lncRNA downstream 469655 9126708 ~ 9153133 (+) True rexo2
TU236397 lncRNA downstream 469655 9126708 ~ 9151066 (+) False rexo2
TU236399 lncRNA downstream 483096 9140149 ~ 9141298 (+) True LOC111195017
XR_002651415.1 lncRNA downstream 483344 9140397 ~ 9141221 (+) False LOC111195017
XM_007244718.3 mRNA upstream 757 8636585 ~ 8646125 (+) True stt3a
XM_007244719.3 mRNA upstream 11935 8623211 ~ 8634947 (+) True ei24
XM_015604665.2 mRNA upstream 44135 8586270 ~ 8602747 (+) False LOC103036350
XM_007244714.3 mRNA downstream 9443 8666496 ~ 8673111 (+) True dcps
XM_007244713.3 mRNA downstream 21186 8678239 ~ 8683951 (+) True kcnj1
XM_007244712.3 mRNA downstream 160534 8817587 ~ 9090793 (+) True kirrel3
XM_022681522.1 mRNA downstream 479902 9136955 ~ 9150078 (+) False rexo2
XM_022681020.1 mRNA downstream 549499 9206552 ~ 9313383 (+) True LOC103036746
TU236173 other upstream 94273 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 721442 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 2105750 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 3463105 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 3743237 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 2175115 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2175115 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 2772818 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 3251819 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 3251819 11908872 ~ 11913456 (+) False G175108

Expression Profile