RNA id: XM_022680991.1


Basic Information

Item Value
RNA id XM_022680991.1
length 2483
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC103044917
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 7739611 ~ 7759850 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGTGCGCGAGGATGTGATGTTTGGTGCTGGAGATCGGGGCTGGAGTTTAGAAGCACGCGGACAAACTGTTGCTCCAGCTTTCAGGactacagGACTGGATTGAGCACTAATCCTCTACTAAGCGATATCTCCATCAGAGCTGGAGGTACAAAATCTGTGACGGTTTTAATGGATCTCCAAACTCACCCTGTTCCACCCTCAGACTGTTAGGAACTAAGGGACCTTACAGAGAGGTCAATCCCACCCACAGCATTATCCCACCTCTACCAAATGTTACAGGCTCACTGAATGTCATCTGTAAGAATATTGTAGGAGTTCAGTCATGGATCCAAACTTCTCCAAAGATTTAAGCTGAAGGCTTGCCTCTAACAGACGATGTGGACGATGAACTGACTGACCATGAGGAACGGAACATCCTGTAATCTCCAGCCTTGGCTCTACTGACCCTGCTAAGGCAGAACCAGGCTTTGGATCACTTCGGACAGCCTCAATCCTCCAGCTGAAAGGATGGCTAAGACTTTCTACAGGCTACAGCGTTTTTTAAGGCGGGCTCGCTTACTCCTCCTCTTCCTGGGTGTGGCTTACATCATGGCAGGAAGTGTCTTGCTGCTCCAGCACTCCAGCGTGGCCTTGTTTCAGAGAGGAACAGACACATCCTCAGCTTTGCCTTTTGTAATGGCGCCCTCCAGAGCCCTGGAGGTGCCGAATGATGGCTGGAGGTACAGGAGATCTGGATCCAGAGGGACTGAAGATATGGAGAACAGTGTGCTGGACCTGTCAGGCAGCAGAGCTGATCAGGAACGGTTCATGTCTCGCAACCTAAAGATCCGACACCTGAGACGCCACTGGATCCAGGGCCGGAGGTCGGAGCAGGAGAATGGAGCTGAGCACAGTCCATCACACAAACCTACCAGACATAAAGGAACCTACATTGGATGCTTCATAAACGATGACAAGCAGCAGCGTGCACTCGGGGGCACCGTGCTCTACGACTTCCGCAAAATGACCAGTTCCCTGTGTCAGGACACCTGCTCGGAGAGTGGGTACCAGTTTGCAGGTCTGGAGTATGGGACTGAGTGTCACTGTGGAAATCGGATCACTGCCCCCCGGGCTCGGAGCGAGGACTGCAATCTGGACTGCAGGGGGGAGAGAGGCTCCCCGTGTGGAGGCGTGGCCCGGCTGTCTGTTTACAAGGTGGAGGAGAGACTGCCCGGCCACAGGAGATacAGGAACGTGCACTACCATGGCTGCTTCCAGGCACTAAAGAACTCCAGCAATGGCTTCCTGGTCCTCACCAGCCAGACCAACCTGACCTTGCAGCTGTGTGTGGAGATCTGTACAGATAGGGAGCTGCCATTAGCTGTAATGAGGAGGCGGGAGTGTCTCTGTGGCCACGCCTCCTCTCTTCTGAAAATGCAGAAGATCATAGAAGGACACTTATGTGGGAGGAACAGTCctataaaccacacccactccAATGACAAGGACTTCCTGCAGGTGTACAGCACACCTGTGCTAGATTCGAGGTGTAAGGAGAGGACGTTTCTGCCTGAGCGGTCCTCCTCACTCACAGCTCTGTCCAGTTTTCCTGGAGCAGGAAACACATGGGTCCGCCACCTCATTGAACTCTCCACCGGATACTACACAGGCAGCTACTACTTTGATGGCTCTTTATACAACAAAGGCTTTAAGGGAGAGAAGGATTACTGGCGGAGTGGGAGAACGATCTGTGTGAAGACTCATGAGAGCGgtcagagagagatagagctgtTCGACTCTGCTGTCCTCCTGATCCGCAACCCGTACCGCTGCCTGGTCGCCGAGTTCAACCGCAAGTGTGCTGGACACCTGGGCTACGCCCCAGACACCCACTGGAAGAGCAAAGAGTGGCCGGAGTTTATGGACAGCTACGCCTCCTGGTGGGCATCGCATGTTCTGTCCTGGTTGAAGTTCTCGCGCCGTTTGCTGGTGGTACATTACGAAGTGCTCCAGATGGACCTGCTTCCTCAGCTGAAGCTCATTACAGCCTTCCTGAACGCCAGCATCCCAGAGCACAGGCTGCTCTGCGCCGAGAGTAACCGCGACGGTCATTTCAAACGCCCCGGCTCCCGCGGCCTGACCTTCGACCCCTTCACTCCGGACATGAGGACTCGGATAGACGGCTATATCCTCTCAGTGGACCGGGCGCTGAGGGACAGGAATCTGAGCGGCCTGCCCCAGGAGTACATGCCCAGATAATGAGGACGAGCGGATAAGTGATTAAACAGAGAGGGAAAAAAGTGCCTGTAAACCCAAGCTTGACTGACAGCTCTTCTCGTGGCCTTGAGGaggtttatttatttggcaGTTCATTATCACACTGGCGCTTtcacttctctttctttctgtctttctgttttccTCCGAGATTCACCTGCCACTCAAACAAAGGGGTGGCTTTATTTGTGGTTTGTGTGCATTAAAATCCTGCTGCCAATCTG

Function

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235839 lncRNA upstream 68062 7667401 ~ 7671860 (+) True G174176
TU235832 lncRNA upstream 94371 7644929 ~ 7645551 (+) True G174170
XR_001518606.2 lncRNA upstream 358890 7358585 ~ 7381032 (+) True LOC103045725
TU235949 lncRNA downstream 123866 7883716 ~ 7892563 (+) True G174256
TU235944 lncRNA downstream 142950 7902800 ~ 7903842 (+) True G174255
TU235966 lncRNA downstream 246423 8006273 ~ 8064801 (+) True G174263
TU236008 lncRNA downstream 398188 8158038 ~ 8166662 (+) True acer3
TU236120 lncRNA downstream 470458 8230308 ~ 8230617 (+) True G174366
XM_007244819.3 mRNA upstream 54463 7683167 ~ 7685459 (+) True LOC103040212
XM_007244754.3 mRNA upstream 427078 7298963 ~ 7312844 (+) True LOC103046439
XM_022680978.1 mRNA upstream 447443 7220371 ~ 7292479 (+) True LOC103040527
XM_022680977.1 mRNA upstream 447443 7220372 ~ 7292479 (+) False LOC103040527
XM_007244758.3 mRNA upstream 522247 7207091 ~ 7217675 (+) False LOC103047365
XM_022680997.1 mRNA downstream 270425 8030275 ~ 8062760 (+) False LOC103039588
XM_022680996.1 mRNA downstream 270426 8030276 ~ 8062760 (+) True LOC103039588
XM_022680999.1 mRNA downstream 285606 8045456 ~ 8062760 (+) False LOC103039588
XM_022680998.1 mRNA downstream 287546 8047396 ~ 8062760 (+) False LOC103039588
XM_022681002.1 mRNA downstream 375729 8135579 ~ 8143458 (+) True LOC103042774
TU235446 other upstream 1198790 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 2556145 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 2836277 4836714 ~ 4903645 (+) False ptbp3
TU234823 other upstream 2870746 4800629 ~ 4869176 (+) False ptbp3
TU234820 other upstream 2872003 4800629 ~ 4867919 (+) False ptbp3
TU235953 other downstream 144745 7904595 ~ 7925440 (+) True G174259
TU236173 other downstream 789103 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 3072318 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 3072318 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 3670021 11429871 ~ 11436530 (+) True G174994

Expression Profile