RNA id: XM_007244773.3


Basic Information

Item Value
RNA id XM_007244773.3
length 3120
RNA type mRNA
GC content 0.41
exon number 8
gene id rab6a
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4469092 ~ 4487880 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTCCTCCGCCAGTCTGAGCGGAGGTGATGGAGTGAGGGGGAGAGCCGGGAGGGTCTCAGAACTTGGGTTTAAACTTGGGTTTGGATTGAACTTCTACTCGGACTAGAGGCGGATTAAAATACTCACATATCGGCTCACCTGTATCCGCCCTTTTAGCGCTCTGACCGAGGCGTGCCGTGCCCGCCCACAGCCTGCCGACTGACGGTTACCGGAGCTGGACGAGTCTCCGCCAGTAGAGTACCGAGCCCCCGTCAAGCTGCCGCTCCCTCTCCGCTGCAGGCATGTCGACCTCCGGAGACTTCGGGAACCCGCTGAGGAAATTTAAACTGGTGTTTCTCGGAGAACAGAGCGTTGGGAAGACTTCACTGATCACCAGATTCATGTACGACAGCTTTGATAACACCTACCAGGCCACAATAGGAATTGATTTTTTATCAAAAACCATGTACCTTGAGGACAGAACAATCAGGTTGCAGCTCTGGGACACGGCAGGTCAGGAGCGCTTCCGTAGCCTCATTCCCAGTTACATCCGAGACTCTGCTGCCGCTGTGGTAGTATACGACATCACAAATGTGAACTCCTTCCAGCAGACCACAAAATGGATTGACGATGtcagaacagagagaggaagtgacgtcATCATCATGCTGGTTGGGAACAAGACAGATCTTGCAGATAAAAGGCAAGTATCTATTGAAGAGGGCGAGAGGAAAGCCAAAGAGCTGAATGTAATGTTTATTGAGACTAGTGCTAAAGCAGGCTACAATGTTAAGCAGCTTTTCCGGCGTGTGGCTGCTGCCCTGCCCGGCATGGAGAGCACACAGGACAAGAGCAGAGAAGACATGATTGACATAAAGCTGGAGAAACCCCCAGAACAGCCAGTCAGCGAAGGCGGCTGTTCTTGCTAAGATCTCGCCTCATCCctcctcaccctctctctctctctctctctccctctctcacactcccCTCTttctcacttctctctctctcctccgtcTCTTCTCGGCTGCAGTATCGGTGTCCCCTCACCTCCCCCCCCCAGCCTGAAACCAGAAGAACACTACTTGTCCATCATCCTCAGCCAAGCTTTCTGCTGACTCACTGAGATGACCTTAAGCTTACGAAGCACAATGTGGATGTGAAAGGtgttgcttctttttttttccctgttaaATTTTGAAATCCGTTATTCTTccttttgttattgttattaatattattatattataattattttggcAAAATAAAACGTTTTAGTACTTTCTGTTTGTTGGCACTGTACCTTGAACAGATAAACGCTTATGCCACAGTTAGGCTCACGCGATGCAGTGCACCTGATGAGTGCAGAAATGGAAAATCTAGGGGTCTGTCTTTGTATATATGTGAGCACTTGAACAATTAAAAGAATAGTCTGAGGAAAAATCCAATGAACATTATTGAGTGATCAGCCAGGGCTAGTTTTGGTTGCTGAAGTTTGCTTCTTTAGGTTGGAATAGGAAATTAAAAGCTTTACTAAAACTGTATTTagaagttatttttttacatgtggAAGTGGGGTAATTTAATTTTACTACAGAACATCTGTACAATTTATTGCTGATTTGAATGAGATAAGAAATCTTGGTATAACTGACTTGGATGGGAGCAGCTACTCGATTTACACACTTTCATCACCTCCAAAATACGTGATGGAAACCAATATTATCAACCACTTATAGCATATATATGTAGGCCATATACAGCCTACACTTCACAAAGACTTACACAGTGACCTTCCTAAAGCCGCAGGAGCATTATCCCATTATCCTAACATCTCCAGTTTCAAACTAAAGAAGTTGACTTCAAATATCAAAATTGTCAGTCTGATTTACTGTATCTGGTATCGGTGATGATAAATCTTGTTTGTTCTATTTTTCGCTGCACTGTTCTTTAATATATTGGATTATTAACAATGTTCTGATGAAGTTCTGAGTACTTTTCCTATTAAAGAGTACTCAGGTGCTACGTGTGCTTTGCAAGCTATCAGAAATTCAGTCTTGCACAGGGTAGAGTTGAGAGTTGGGAGTGCAAACTAAGACTAAAGGCATGTCATGTTTACGGGGTATTGGGATTGAAGTCTAGAAGTCTAGATTATGTCATTATCGGCTATGCAGGGGTGTCATGTTCTGTCTTTGGGGAGTAAATAAAACGAGACACCATCACCATCCTTAATATTTACATTACGGACGCTCTTATACACAGAACGGTTTTCAGCATGAAACTCATCaaatctctcttttattttggCTCATTTTTTCACCTCGGCTGCCATTCTCTTATACAtagagtgttaaaaaaaatccagtagCACAGTAGTAGGAAAAGTACAGTTACTTCACACAGTAGATAAgatgatttatttgttttttgtttgttttgttttgtatattaaGGGACATTATCATAGACATCAACTGATTATATCAATGCATATTATGCAGCCATGCCTTTAAGAGTTTTATAGGGCTTCCacaggcgttttttttttgtttgtttgtttgtttgttagcatTGTAAAGTTtgatttaatgtaatattaaaataatgacactttagctgtctgtttttttcctcATATATTGGTTTGTTGAATCGACCATGATgtgtaatatttatttctattcagatcatgttgcttttttttttgtttctctttaattttcTGTCATAATGTGGTCATAATTCACAATTTTTTTGCAATGCTTTGTAGACCCCCTCCAAAACAGACCCACCAGCAGGTTTAAGCAAGCTCAAGATACAGTGCAAAATAGagtggtgtttttttcttgtttgtttgttttgtttcttaatttttccctTCCCAGattgttttggttgtttttgttCCTGGAGGAAAGTCCATGCACGGTAACCGTTACCTCCAGgttgtcagattttttttttcttcattttgtctaattttatttgttttatatttgtttattgactgtttttttaactgtcacCACTGTGTGCTGCTGTGATGCTGTGTACAAAACGCTCATAATTTGCACTGCTAGATTACATCAGTGTCTTATTGACATCCCTAATAAAGACCTTTATTTAGTGACTATGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234593 lncRNA upstream 2145 4463430 ~ 4466951 (+) True G173279
TU234579 lncRNA upstream 52884 4402036 ~ 4416212 (+) True G173270
TU234580 lncRNA upstream 52884 4411888 ~ 4416212 (+) False G173270
TU234583 lncRNA upstream 58317 4408952 ~ 4410779 (+) True G173272
TU234575 lncRNA upstream 68516 4393074 ~ 4400580 (+) True G173268
TU234607 lncRNA downstream 18711 4506591 ~ 4507032 (+) True G173288
TU234612 lncRNA downstream 80188 4568068 ~ 4571221 (+) True G173292
TU234747 lncRNA downstream 204965 4692845 ~ 4693060 (+) True G173380
TU234750 lncRNA downstream 222231 4710111 ~ 4711181 (+) True G173383
TU234757 lncRNA downstream 224181 4712061 ~ 4775385 (+) True G173386
XM_007244781.3 mRNA upstream 11531 4452254 ~ 4457565 (+) True ucp2
XM_022680914.1 mRNA upstream 25066 4438040 ~ 4444030 (+) False LOC103026990
XM_022680915.1 mRNA upstream 25066 4438040 ~ 4444030 (+) False LOC103026990
XM_007244779.3 mRNA upstream 25066 4438040 ~ 4444030 (+) True LOC103026990
XM_007244787.3 mRNA upstream 80067 4383131 ~ 4389029 (+) True LOC103029159
XM_022680918.1 mRNA downstream 15238 4503118 ~ 4525930 (+) False LOC103024425
XM_022680917.1 mRNA downstream 15240 4503120 ~ 4525930 (+) False LOC103024425
XM_022680916.1 mRNA downstream 15241 4503121 ~ 4525930 (+) True LOC103024425
XM_007244770.3 mRNA downstream 15245 4503125 ~ 4525930 (+) False LOC103024425
XM_022680919.1 mRNA downstream 15245 4503125 ~ 4525930 (+) False LOC103024425
TU234387 other upstream 537105 3908942 ~ 3931991 (+) True G173111
TU234364 other upstream 725891 3740302 ~ 3743205 (+) True G173094
TU234126 other upstream 1743026 2718609 ~ 2726070 (+) False LOC103031931
TU233936 other upstream 2471734 1994708 ~ 1997362 (+) True G172770
TU233877 other upstream 2613342 1853282 ~ 1855754 (+) True G172725
TU234776 other downstream 255689 4743569 ~ 4744249 (+) True G173397
TU234820 other downstream 312749 4800629 ~ 4867919 (+) False ptbp3
TU234823 other downstream 312749 4800629 ~ 4869176 (+) False ptbp3
TU234827 other downstream 348834 4836714 ~ 4903645 (+) False ptbp3
TU234946 other downstream 695611 5183491 ~ 5183777 (+) True G173501

Expression Profile