RNA id: XM_022680915.1


Basic Information

Item Value
RNA id XM_022680915.1
length 2207
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC103026990
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4438040 ~ 4444030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCGTGTGTCAGTCTGACAGAAGTGTGTAACCTCAGCTAGCGGCACTTTGGAATACTTCCTGGCAAGAACCTGGGCTAACCTTTACCTTCGTTTTCCAGATGGATTaaggaattttggaattttatCAGAAGTGGAATGCTACATCGGGATTGTATTCCATACGTTTTCATGGCCAAAAACTCTGAACCTGAAAAACGACTGGCACAACAGAGAAGAATCCCAGTTGAAGAAACCTGAGaagaagcagaaaacATGGTTGGACTCAAGCCCACAGACTTGGCTCCCACAGCCGCAGTGAAGTTCTTTGGCGCGGGAACGGCGGCGTGTATCGCTGACTTGGTGACCTTTCCCCTGGATACAGCCAAAGTGAGGCTTCAGATACAGGGAGAATCCAAGCCAGCTGAAGGAGTAGCAGGGACGAAGTATAGGGGTGTTTTTGGCACCATCAATACCATGGTGCGCACTGAGGGGCCAAGGAGCTTGTACAACGGTCTGGTGGCTGGACTGCAGAGACAAATGAGCTTTGCCTCAGTGCGTATCGGCCTCTACGACTCTATGAAGCAGTTCTACACCAGAGGCTCAGAAGAGGCGAGCATTGTGAGCCGGTTGATGGCAGGCTGCACGACAGGAGCCATGGCCGTAGCGTTTGCACAGCCAACAGATGTTGTGAAGGTGCGCTTCCAAGCCCAAGTACGAGTAGCTGATGGCGCCAAGCGATACAACAGCACAATGGACGCCTACAGGACCATTGCTCGCAATGAAGGCATCAAAGGCCTGTGGAAAGGTTGTTTGCCAAACATCACCCGAAACGCCATTGTGAACTGTGCAGAGCTGGTCACCTACGACATCATCAAGGAGCTGATACTGAAGTACAATCTGATGACAGATAACCTGCCCTGCCACTTCACGGCTGCGTTTGGAGCCGGTTTCTGCACCACCATCGTGGCGTCTCCAGTGGACGTGGTGAAGACACGCTTTATGAACTCCAGTCCCGGCCAGTACAGCAGTGCCATCAACTGTGCCATCACCATGCTGACCAAGGAAGGACCTACAGCCTTTTATAAGGGCTTCATGCCCTCGTTCCTGCGTCTGGGATCCTGGAACATTGTGATGTTTGTCTCCTACGAGCAAATCAAGAGAGCCATGACGCGAGCGCAGCAGTCCTGGGAGTCACCGTTTTGAACTGTCGCATCAGGACAAGAATATGaaagaaaacattaatttaatttatattcctGTGGATCCAGTACTTACCAGCCAGAGAGGACAGTGCTGATGTATGAAAGTCCTCTGTAATGGCGAGAGTTGGAGAAGATGCAGCAGAAGATCTATATTATGGGATTATCTAAGTCTTATCTCTGTGGTGGACTGAGATGAAATAGAGCAGTATGAGAGAACTCATTGTGGATTTACAGCACTTTAAAGACCAAAGGTAGAGCTTACCACTGTTAAACTGTCACAAAGCAAAGGGTGACTGGGAACTGTCGGTGGAGGAAAAATGAGatgtagggctgtgtattggcacaAACTTAGCGATACACTACATATCATGTACATATACAGGGGTAACAAATCaatatttcacattattttGCAATAATGTATCAAGGAGATATATTGCGATTGTTTAAGAAAACctgtcatagtataaaaaactgagtactttttatccaatcacaacagtgggatctaatgaCACTGTACAACACTGCCCTCTAGCTGTCAGGATTTACACAACaaaaaatgaaccactgtctgacagcAATCTtcacatgtaaactaataactaaaaaacaatactgtgcttttaaaaatcaatacagtattgcaaaacaaaatattacaatacttTGATATACTGATATTTTCCTACACCCCTAATGAAACGCCAAACATATCTTTAGATCTTGCACAGGTTTTGGTTTTGTCTTCTCAGAGGAGTGAGTGTATATTTTCGTTAATGTCATATTATGTCACTTTTTTAATACAATGAAGGGTACAGTCATGTTTACACAATTGTTAGGGCTTCACAGCTCTAGTTTACAAAAGCTTGGACCGTATGAAGGTTGGGTCCATAGCAGATGAACTGTTTGTTGCCATTATGAATGCACATGTTTGTTCTACTGTATGTAGGGCAAAAtatttaaagctttattttatacaatgtctatttttgtcaataaaatacaaaaatatatattttta

Function

GO:

id name namespace
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234579 lncRNA upstream 21828 4402036 ~ 4416212 (+) True G173270
TU234580 lncRNA upstream 21828 4411888 ~ 4416212 (+) False G173270
TU234583 lncRNA upstream 27261 4408952 ~ 4410779 (+) True G173272
TU234575 lncRNA upstream 37460 4393074 ~ 4400580 (+) True G173268
TU234562 lncRNA upstream 121568 4313844 ~ 4316472 (+) True G173259
TU234591 lncRNA downstream 8839 4452869 ~ 4490753 (+) True G173278
TU234593 lncRNA downstream 19400 4463430 ~ 4466951 (+) True G173279
TU234607 lncRNA downstream 62561 4506591 ~ 4507032 (+) True G173288
TU234612 lncRNA downstream 124038 4568068 ~ 4571221 (+) True G173292
TU234747 lncRNA downstream 248815 4692845 ~ 4693060 (+) True G173380
XM_007244787.3 mRNA upstream 49011 4383131 ~ 4389029 (+) True LOC103029159
XM_007244788.3 mRNA upstream 58688 4354934 ~ 4379352 (+) True ranbp3l
XM_022680913.1 mRNA upstream 58688 4354934 ~ 4379352 (+) False ranbp3l
XM_022681516.1 mRNA upstream 100345 4332873 ~ 4337695 (+) True LOC111195096
XM_007244825.2 mRNA upstream 194011 4242168 ~ 4244029 (+) True LOC103042678
XM_007244781.3 mRNA downstream 8224 4452254 ~ 4457565 (+) True ucp2
XM_007244776.3 mRNA downstream 25062 4469092 ~ 4487880 (+) True rab6a
XM_007244775.3 mRNA downstream 25063 4469093 ~ 4487880 (+) False rab6a
XM_007244773.3 mRNA downstream 25066 4469096 ~ 4487880 (+) False rab6a
XM_007244774.3 mRNA downstream 25066 4469096 ~ 4487880 (+) False rab6a
TU234387 other upstream 506049 3908942 ~ 3931991 (+) True G173111
TU234364 other upstream 694835 3740302 ~ 3743205 (+) True G173094
TU234126 other upstream 1711970 2718609 ~ 2726070 (+) False LOC103031931
TU233936 other upstream 2440678 1994708 ~ 1997362 (+) True G172770
TU233877 other upstream 2582286 1853282 ~ 1855754 (+) True G172725
TU234776 other downstream 299539 4743569 ~ 4744249 (+) True G173397
TU234820 other downstream 356599 4800629 ~ 4867919 (+) False ptbp3
TU234823 other downstream 356599 4800629 ~ 4869176 (+) False ptbp3
TU234827 other downstream 392684 4836714 ~ 4903645 (+) False ptbp3
TU234946 other downstream 739461 5183491 ~ 5183777 (+) True G173501

Expression Profile