RNA id: XM_007244814.3


Basic Information

Item Value
RNA id XM_007244814.3
length 1503
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC103038651
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8189220 ~ 8191739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCTGGAAAGAGAAGCAAGATGAAGGCTTTCTATCAGCTCTGCATTCTTATTGCCCTGGTGCTCAGCACTCAATCAGGTCCAATTCCAGCAGTGATGGACAAGGAGGAAGAAGACATGGCCAAGgaTTACCTAAAGAAGTTGTACAACATGAAAGAGGAGACCAGGCGCACTTTTGGTCGCACGGTCAGTGAGATGAGTGAGAAACTGGCTGAAATGCAGAATTTTTTTGAGCTGACTGTGACGGGAACTCTGGACAATGAAACACTGGAGGTGATGAAGAAGCCTCGCTGTGGGGTTCCAGATGTTGCTTCCTATGCTGCAGCTCCAGTAGACTACAAGTGGGCTACCAACAAGCTGACCTACAGGATTGAGAACTACACTCCTGACATGTCTCAGGCTGAGGTGGACAATTCTATTGTGAGAGCTTTCAAAGTCTGGTCTGATGTCACTCCCCTCAAGTTCACCCGCATTTACAGTGGTGTAGCCGATATCATGATCTCCTTCGGTGCCAGAGTTCATGGCGATGGCTACCCATTTGATGGACCAAGCGGTACCTTGGCTCATGCCTTTTTTCCCTCTTCTGGCATTGGTGGAGATGCTCATTTTGATGAAGATGAGACCTTTACCTTCGCATCACAATATGGAATCAACTTGTTCCTGGTTGCTGCTCATGAGTTCGGACACGCCTTGGGCCTTGACCATTCCAGGGTTCGCAATGCTCTCATGTTCCCAACCTATAGCTATAGGGATGTAAAGACCTTCGTTCTGCCCCAAGACGACATCCAGAGAATTCAGGCTCTCTAtgGCTCCAACTCTGATAAACCTGTTGCCCCTGAGAAGCCTGATCCCACACGTCCAGTAACTCCTGATACCTGCGACTCTAACATGGTCCTGGATGCCGTTATGATGCGGCGAGGAGAAATGTTCTTCTTCAAGAATGGAGTCTTTTGGCGATCTCGGCCATTCAGCAACCAGAAGGTACAACATCAGATCAAGAACTTCTGGCCCGAGGCTCCAGAGAACATTGACGCTGCTTATGAGAGCCCATCAAATGGCTTAAGCTACATCTTTAAAGGTCAGAAGGTCTGGGCTTTCTCTGGTTCCAGTGTTGTCAATGGATATCCCAAACCCCTCAGCAGCTTGGGGCTGCCTACAACAGTAACGAAAATCAACGCTGCTCTTTACGACCAGAACTCTCGCAAGACCCTTTTCTTTGTTGACAACATTTACTACAGTTACAATGAGGCACTGAGGAGGATGGACAGGGGTTACCCTAAACGTCTGGAACAAAGCTTTCGAGGAATGCCAGGAAAAGTTACTGCCGCTTTCCAGTACAGAGgttaCACCTACCTCTACAATGGGCCGCGCATTTATGAGTTTGGCAATGCAAGACTTATGCGTGTACTAAATAACCGTTACTTCCTGCGATGCTAAACATTTAGATCGGCATGCCACGCAGGCAGTGGCGAACCAAAGGCTAAAGTACAAAGTAAATTATTGA

Function

GO: NA

KEGG:

id description
K07761 5MMP; metalloendoproteinase 5-MMP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236008 lncRNA upstream 22558 8158038 ~ 8166662 (+) True acer3
TU235966 lncRNA upstream 124419 8006273 ~ 8064801 (+) True G174263
TU235944 lncRNA upstream 285378 7902800 ~ 7903842 (+) True G174255
TU235949 lncRNA upstream 296657 7883716 ~ 7892563 (+) True G174256
TU235839 lncRNA upstream 517360 7667401 ~ 7671860 (+) True G174176
TU236120 lncRNA downstream 38569 8230308 ~ 8230617 (+) True G174366
TU236172 lncRNA downstream 306716 8498455 ~ 8498951 (+) True G174408
TU236202 lncRNA downstream 370771 8562510 ~ 8562865 (+) True G174424
TU236222 lncRNA downstream 463785 8655524 ~ 8658542 (+) True G174438
TU236379 lncRNA downstream 900702 9092441 ~ 9094096 (+) True G174559
XM_007244815.3 mRNA upstream 2724 8173875 ~ 8186496 (+) True LOC103038957
XM_007244740.3 mRNA upstream 27035 8149119 ~ 8162185 (+) False acer3
XM_022681003.1 mRNA upstream 40876 8145249 ~ 8148344 (+) True LOC103042468
XM_022681002.1 mRNA upstream 45762 8135579 ~ 8143458 (+) True LOC103042774
XM_022680998.1 mRNA upstream 126460 8047396 ~ 8062760 (+) False LOC103039588
XM_007244737.3 mRNA downstream 3357 8195096 ~ 8198161 (+) True LOC103041345
XM_022680682.1 mRNA downstream 25053 8216792 ~ 8223333 (+) True LOC103038343
XM_022681004.1 mRNA downstream 42072 8233811 ~ 8241060 (+) True LOC111195015
XM_015604657.2 mRNA downstream 54147 8245886 ~ 8249321 (+) True LOC107197515
XM_015604656.2 mRNA downstream 61163 8252902 ~ 8260391 (+) True LOC103038016
TU235953 other upstream 263780 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 1648088 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 3005443 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 3285575 4836714 ~ 4903645 (+) False ptbp3
TU234823 other upstream 3320044 4800629 ~ 4869176 (+) False ptbp3
TU236173 other downstream 357214 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 2640429 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2640429 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 3238132 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 3717133 11908872 ~ 11913456 (+) True G175108

Expression Profile