RNA id: XM_007247252.3


Basic Information

Item Value
RNA id XM_007247252.3
length 3354
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC103038234
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32343339 ~ 32428813 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCGCGCTCCCACAAGTAGCTCGAGCGCGCCGGGGTTGAGCTCTGAGGGGTCTGTGGTGGGCTTCTCCTGAAGAAAATGATACAGAAGAGGGGATATTTACCTTTATATCTTTATAATGTAGCTAAAAATCTGAGTACCTGGCTCGAGCAGCGGGCTGTATATGATGTGTCCAGTTAGGCGCGCGAGGTGCGGAGAAAAGCGCGGGAAGCGGATGAGCTCGTGCTCTGGTAGTGAACGGCTCAACTGGCGTCTGTAAGATGAAGTTTACCACAAATTTGGATTACGGAGCCATGGAGAAGCGAAACAGACTGTTTTTACTGCTTCTCTTCATCATGTCCAAACTGTACCTCAGTGACCAGCAGGTTCTCAGAATCGGGGGCATTTTTGAGACTCGGGAGAATGAGCCAGTGAGTGTGGATGAGTTAGCCTTCAAATTTGCCGTGACTAGTATCAACCGGAACAGGACACTGATGCCAAACACCACTTTGACCTATGACATTCAGAGAGTGAATCTCTTTGACAGTTTTGAAGCATCTCGAAGAGTATGTGACCAGTTAGCTCTGGGTGTAGCTGCAGTGTTTGGCCCAGCTCACAGCTCTTCTGTCAGTGCAGTGCAGTCTATCTGTAATGCCCTGGAGGTTCCTCATATTCAGACCCGCTGGAAACACCCCTCAGTGGACAACAAGGACACTTTCTTTATCAACCTGTACCCAGAGCACACCTCCATCAGCAGGGCTATTCTAGATGTTGTCACGTACTACAAGTGGAAGTCCATTACTGTGGTCTATGAAGACAGCACAGGGCTAATGCGCATGCAAGAGCTGATTAAAGCCCCGTCCAGAAACGGCATGAAGGTGCGTATTCGCCAGCTGCCCATCGGGAGCAGCGATGCCCGTCCTCTGCTCAAGGAGATGAAGAAGGAGCAGGAGTTCTACGTCATCTTTGACTGCTCCAACCAAATGGCTTCTGAGCTGCTCAAACAGctaatGTCAATGGGGATGATGACGGAGTACTACCATTTTTTCTTCACCACCTTGGATCTCTTTGCACTGGACCTGGAACCATACCGCTACAGTGGTGTTAACATGACTGCATTCCGCCTGCTGAAACTCGACGACCCCTACGTGGGATCAATTGTTCAGAAGTGGAGCACAGAGCGCCAGCTGTCCCCACCCAGACCTGAGAGTGGCCTAATGATCGGCATGATGAATACAGCAGCCGCTCTCATGTATGACGCTGTGTTCATGGTTGCTGTGGCATCCCAGAGAGCCAGCCAGATGACAGTGAGCTCTCTGCAATGCCACAGGCACAAGCCATGGAGGTACGGACCTCGATTCATGAACCTGTTCAAGGAGGCTCAGTGGGATGGCCTAACAGGACGCATAATCCTTAACAAGACTGATGGACTCAGGAAAGACTTTGATTTGGACCTCATCAGCCTCAAGGAGGATGGTACAGCAAAGCGTGTAGTTGATGGTGCAGCACGTCGTACTAAATTGTGGACAAAGATTGGGGTGTGGAACTCGTACTCTGGTCTGAATTTAACTGAGAAAAAGGAGAACAATAAAAACGTCACAGATTCGCTGGCAAACAGAACTCTGATTGTTACCACGATCCTGGAGAACCCATATGTGATGTACAAGAAGTCAGACAAGGTGCTTTATGGGAATGATCGCTTTGAAGGCTACTGTCTGGACCTGCTGAAAGAGCTCTCCAACATCCTGGGATTTAATTATGAAGTCAAGCTGGTGACCGATGGAAAGTACGGTGCCCAGAATGACAAGGGAGAATGGAATGGCATGGTCAGGGAGCTTATTGACCATATAGCGGATCTGGCTGTGGCTCCTTTGACCATCACTTACGTGCGGGAGAAAGTCATAGACTTCTCTAAACCTTTCATGACCCTGGGCATCAGTATTCTGTACCGCAAACCCAATGGCACCAACCCAGGGGTCTTCTCATTCCTCAACCCCCTCACTCCAGATATCTGGATGTACGTGTTGCTGGCCTGCCTGGGAGTCAGCTGTGTGCTCTTTGTCATTGCCAGgttCACACCATATGAATGGTATAACCCTCACCCCTGCAACGCTTCATCAGATGTGATGGAAAACAACTTCACCTTACTGAATAGTTTATGGTTTGGAGTTGCAGCTCTCATGAGACAAGGCTCAGAACTGATGCCCAAGGCTCTATCAACTAGAATCGTTGGAGGGATTTGGTGGTTCTTCACACTAATCATAATATCGTCTTATACTGCTAACCTGGCTGCCTTTCTCACGGTGGAGAGGATGGATGCTCCAATCGATTCAGCGGATGATCTGGCAAAGCAGACTAGAATTGAGTACGGGGCTGTGAGAGATGGCTCGACCATGACTTTCTTTAAAaaatcaaaGATCTCAACATACGAAAAGATGTGGACCTTCATGAGCAGCAGGAAGAACACAGCTTTGGTTAAGAATACCAGAGAGGGCATCACACGCGTCCTAACCACAGACTATGCTCTCCTCATGGAGTCTACGAGCATTGAGTACATCAGCCAAAGGAACTGCAACCTCACTCAAGTCGGTGGACTCATAGATTCTAAGGGCTATGGAGTAGGCACACCTATAGGGTCACCCTACCGGGACAAGATAACCATCGCCATCCTGCAGCTGCAAGAAGAAGGCAAGCTGCACATGATGAAGGAAAAGTGGTGGAGAGGGAATGGCTGCCCTGAGGAAGACAACAAAGAGGCTAGTGCCCTGGGCGTGGAGAACATCGGTGGTATCTTCATCGTGCTGGCTGCTGGCCTCGTCCTGTCAGTGTTCGTGGCAATAGGAGAATTTATCTACAAGGCCCGCAAGAACAGTGACATCGAGGAGTGCATCTCTTTCAGTGAAGTGATGGAGGAGCTGGGCGTCACCTTCAGATGCCACAAGGCCATGAGGAAAAGAGGAAGACCACGAGGAAGAGCTGCCCTCACAGGAGTCTTATGCAATTCCAAACGCATCATGAGGAAAGAAACTATGGCCTAGAAAGACATTTTAACATGCAGACTGGAGATCCATTTGACTGAATAAGACTCACAAGAGACCTTCTCACTCACAAGTCGTCAAggatgtttttaaattatttctttctttcctttattAAAAAGACTAGAGCATTTGAACATGGATGTAACGTACATTGCTTTCAATTTGTGGTTGAAGAGCACATCTTGCAATAGTTGTGTTtctgaatgaaaatgaaaggattgGGGAATTGGGGATTTTTCAGTTGCCCTCACTGAAACATCACATTCTACATGGTACAGTAGCATTTCTTGTGCTGTCCtcacttttcaaaataaaaaggttttacatattttaaa

Function

GO: NA

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244553 lncRNA downstream 16517 32322101 ~ 32326822 (-) True G180562
TU244530 lncRNA downstream 78600 32263574 ~ 32264739 (-) True G180540
TU244533 lncRNA downstream 134770 32205121 ~ 32208569 (-) True G180543
TU244424 lncRNA downstream 263515 32077364 ~ 32079824 (-) True G180454
TU244323 lncRNA downstream 583901 31758098 ~ 31759438 (-) True G180366
TU244564 lncRNA upstream 7512 32436325 ~ 32445752 (-) False tiam1
TU244569 lncRNA upstream 27733 32456546 ~ 32457411 (-) True G180570
TU244575 lncRNA upstream 125766 32554579 ~ 32558540 (-) True G180576
TU244576 lncRNA upstream 127019 32555832 ~ 32557530 (-) True G180577
TU244581 lncRNA upstream 173877 32602690 ~ 32603055 (-) True G180582
XM_007247258.3 mRNA downstream 66562 32264997 ~ 32276777 (-) True cct8
XM_007247259.3 mRNA downstream 66563 32264997 ~ 32276776 (-) False cct8
XM_022680727.1 mRNA downstream 80741 32245007 ~ 32262598 (-) True tmem135
XM_007247263.3 mRNA downstream 236428 32100201 ~ 32106911 (-) True LOC103041136
XM_007247264.3 mRNA downstream 246539 32090689 ~ 32096800 (-) True LOC103041448
XM_022681429.1 mRNA upstream 7518 32436331 ~ 32584343 (-) True tiam1
XM_022681431.1 mRNA upstream 7518 32436331 ~ 32469016 (-) False tiam1
XM_022681430.1 mRNA upstream 7518 32436331 ~ 32466499 (-) False tiam1
XM_015605332.2 mRNA upstream 222505 32651318 ~ 32658440 (-) True sod1
XM_007247250.3 mRNA upstream 232403 32661216 ~ 32680718 (-) True scaf4
TU244539 other downstream 80766 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 408545 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1385572 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3492234 28850690 ~ 28851105 (-) True G179816
TU243339 other downstream 4776647 27562974 ~ 27566692 (-) False G179578
XR_002651488.1 other upstream 747950 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3004419 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile