RNA id: XM_007247259.3


Basic Information

Item Value
RNA id XM_007247259.3
length 1942
RNA type mRNA
GC content 0.49
exon number 15
gene id cct8
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32264997 ~ 32276777 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTCCTGTCTTTCTTAGCCGCACGCTGCTCGGGTTGTGCTGCAGCGGCTCTCATTATCTCCATCAGTTCAGCCTCCGCGGGGCTCTCAGACTCTCAGCATGGCCCTCCACGTCCCCAAAGCGCCGGGCTTCGCCCAGATGTTGAAGGACGGCGCTAAGCATTATTCAGGTCTCGAGGAAGCCGTTTTCAGAAATATCCAGGCATGCAAGGAGCTGGCACAGACCACAAGAACTGCATACGGACCTAATGgaATGAACAAAATGGTCATCAACCACTTGGAGAAACTGTTTGTAACCAATGACGCAGCCACCATTCTAAGAGAGCTTGAGGTCCAGCATCCAGCTGCTAAGATGATTGTGATGGCATCCCACATGCAGGAGCAGGAGGTGGGAGATGGAACCAACTTTGTCCTGGTGTTCGCTGGCGCTCTGCTTGAACTGGCAGAGGAGCTTCTGAGAATGGGTCTCTCTGTTTCAGAGGTCATTGAGGGCTATGAGATGGCCTGCAAAAAGGCCCTGGACATTCTGCCAGACCTGGTCTGCTCATCTGCCAAAAACCTGCATGACTTGGCTGAGGCCACCGCAATGATTCGTACTGCTGTGATGAGCAAACAGTATGGCAACGAGGACTTCCTTGCCGATCTCATCGCACAAGCCTGTGTCTCCATTTTTCCTGAGTCTGGCAGTTTCAATGTTGATAATGTCAGAGTGTGTAAGATCTTGGGATGTGGACTGAATGCCTCTTCGATGCTCCATGGAATGGTTTTCAAGAAGGAGGTTGAAGGAGACATCACAGCAGTTAAAGATACCAAGATAGCTGTATTCTCCTGTCCTTTTGACTGCATGGTTACTGAGACCAAGggcacTGTGTTGATTAAGAATGCTGAGGAGCTGATGAACTTCAGCAAAGGAGAGGAGGACTTGATGGAGGCACAGGTGAAAGCTATTGCTGACGCTGGAGCTAATGTGGTGGTAACCGGGGGCAAAGTGGCAGATATGGCTTTACACTATGCCAACAAGTACCAGCTCATGGTAGTACGACTCAACTCCAAATGGGATCTTAGACGGTTATGCAAAACTGTTGGTGCTGTTGCGCTGCCTAGAATGACTGTTCCTACTCCAGAGGAGATGGGGCACTGTGACAGTGTGTACCTGTCAGAGGTCGGAGATACCCAGGTCGTAGTGTTCAAACATGAGAAAGAAGATGGTGCCATCTCTACACTTGTGATTAGAGGGTCCACAGACAATCTGATGGATGACATCGAAAGAGCCATTGATGATGGAGTAAACACCTTCAAGGTTCTTGTCAGGgACAAGCGTTTGTGTCCTGGTGCCGGGGCTACAGAGATTGAACTGGCTAAACAGATTATGTCCTATGGAGAGTCTTGCCCAGGTCTGGAGCAGTATGCCATCAAGAAGTTTGCTGAGGCTTTTGAGGCTGTGCCACGGGCGTTGGcagagaactctggtgtgaaggGCAATGAGCTGATCTCCAAATTGTATGCAGTGCATCATGATGGCAACAAAAACATGGGCTTTGATATTGAGGGTGAAGGGCCAGTGGTGAAGGACATGCTTGAGGCAGGCATTCTGGATCCTTACCTGGTCAAATACTGGGGCATCAAACTGGCCACTAACGCTGCCATCACCGTTCTCCGGGTCGATCAGATCATCATGGCCAAGCCGGCTGGTGGACCCAGAGCGCCACCTGAGAAGAAGGACTGGGATGAGGACGAATGAGCTAGCCTTGCGTAGACGCCTGTTTATCTGGCGTTTCCTTTTCCACGttatgacctttttatttaatatgaacaccttgttttgtatttttgttttctttagcacAAGCTTTGGAATAATTGTAAGTTCAGAAGTGGATGGCTCTGTAGTTTCTGTGGTCCCAATAAAAGGCACTTGAGCTGTCAAGTATCTGTCAAAGATGA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0035095 behavioral response to nicotine biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244530 lncRNA downstream 258 32263574 ~ 32264739 (-) True G180540
TU244533 lncRNA downstream 56428 32205121 ~ 32208569 (-) True G180543
TU244424 lncRNA downstream 185173 32077364 ~ 32079824 (-) True G180454
TU244323 lncRNA downstream 505559 31758098 ~ 31759438 (-) True G180366
TU244331 lncRNA downstream 522007 31742731 ~ 31742990 (-) True G180373
TU244553 lncRNA upstream 45325 32322101 ~ 32326822 (-) True G180562
TU244564 lncRNA upstream 159549 32436325 ~ 32445752 (-) False tiam1
TU244569 lncRNA upstream 179770 32456546 ~ 32457411 (-) True G180570
TU244575 lncRNA upstream 277803 32554579 ~ 32558540 (-) True G180576
TU244576 lncRNA upstream 279056 32555832 ~ 32557530 (-) True G180577
XM_022680727.1 mRNA downstream 2399 32245007 ~ 32262598 (-) True tmem135
XM_007247263.3 mRNA downstream 158086 32100201 ~ 32106911 (-) True LOC103041136
XM_007247264.3 mRNA downstream 168197 32090689 ~ 32096800 (-) True LOC103041448
XM_022680726.1 mRNA downstream 193073 31894202 ~ 32071924 (-) True LOC103030555
XM_015605316.2 mRNA downstream 417028 31761901 ~ 31847969 (-) True LOC103030874
XM_007247255.3 mRNA upstream 66563 32343339 ~ 32428813 (-) False LOC103038234
XM_007247252.3 mRNA upstream 66563 32343339 ~ 32428813 (-) True LOC103038234
XM_022681427.1 mRNA upstream 66952 32343728 ~ 32428813 (-) False LOC103038234
XM_022681428.1 mRNA upstream 66953 32343729 ~ 32428813 (-) False LOC103038234
XM_007247253.2 mRNA upstream 66969 32343745 ~ 32428813 (-) False LOC103038234
TU244539 other downstream 2424 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 330203 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1307230 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3413892 28850690 ~ 28851105 (-) True G179816
TU243339 other downstream 4698305 27562974 ~ 27566692 (-) False G179578
XR_002651488.1 other upstream 899987 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3156456 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile