RNA id: XM_007247263.3


Basic Information

Item Value
RNA id XM_007247263.3
length 2672
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC103041136
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32100201 ~ 32106911 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcAGGAGAAGCTCTGGGATCACTGCTGAGATGCGGTTGCTGGCTCTGATCAGTCTTTTCATTCAGTTTTTGACACCAACATTTCAGCAGTTTCCTCGCCAATGTGCCACCACAGAGGCCCTGTTATCCAAGGAGTGCTGTCCCGTCTGGGAGGGGGACGGGTCGGCCTGTGGGGCGAGGTCAGGTCGGGGAGTGTGCCAAGATGTGGTGGTGTCTGAGGAGCCAAATGGTCCCCAGTACCCGTTTGAAGGTTTGgatgatagagagagatggcCACTGGTGTTCTACAACCGGACCTGCCGCTGCCTCCAGAACTACATGGGCCATAACTGTGGGGACTGCAGGTTCGGCCACTTTGGCCCGAACTGTGCCGAGAGGCGTGAATCAGTCCGTAAGGAGGTGTTCCAGCTGTCCACTACAGAAAGGCAAAAGTTAATTTCATACCTTAATCTTGCCAAGAACACGATCAGCCAGGATTATGTGATTGCTACTGGCACCTACCTGGAAATGAACAACGGCACCAACCCTCTGTTCAGAAACGTCTCCGTCTACGACCTGTTCGTCTGGATGCACTACTACGTTTCCAGACACGCTATGCTAGGTGGCACCAACAATGTATGGAGGGGGGTAGATTTCGGGCACTGGGCACCAGGCTTCTTACCTTGGCACAGAGTGTTTTTGCTGCGCTGGGAGCACGAGATAAGAAAGTTAACTGGAGATTTTACATTTACCATTCCCTACTGGGACTGGAGAGACGCACAGGAATGTGAAGTATGTACTGATGATCTCGTGGGGAGTCAAAGCCGCCTGAACCCGAACCTCATCAGTCCGGCTTCTGTGTTCTCCTCCTGGAAGGTGATTTGCTCCAGAGCACCAGAGTACAGTTTGAATGGTGTGTTGTGCGATGGCAGAGAGGAAGGACCCTTACTACGCAACCCTGGTAAACATGACCGGAACCTGGCGAGCGGACTGCCCACGTCTGCTGAAGTGGACTTTACTCTGGGCCTGTCCCAGTACGACACCGGACCAATGGACCGCACGGCCAATATGAGCTTCAGAAACACACTGGAAGGATTTGGAGATCCTCGAACTGGCCTTGGAAACAGTCCTAAGCTGGGAATGCATGCAGCGCTGCATGTTTTCATGAACGGCTCCATGACTTCAGTGCAGGGCTCAGCCAATGACCCAGTTTTCCTCCTGCATCATGCCTTTGTAGATAGtaTCTACGAGCAGTGGTTGAGAAGGCACCAACCGGAAAGGTCTCATTACCCCACAGCCAACGCTCCAATCGGACACAACAGTGAATACTACATGGCTCCATTCCTTCCTCTGTACAGGAATGGAGATTACTTCCTTTCCAGCAAAGATATGGGCTATGAGTATTCCTACCTTCGAGATCCAGGCCAGCAGTTTGTGGATAACGTAGCGTCGTATCTGGAGCAGGTGAAGGGGCTCTGGCCGTGGCTCCTGGGGGCGGCTCTGTTGGGAGCGGTCTGCTCTGCGGCTTTGGCTGTGGGCTTGGCTAAAGCTGGCAGATCAGCACTGAGGCGCAGGAGAAGAAATCAGAGCTCTGAGAAGCAGCCCCTCATAATCAGCACAGACACTGAGGGGTCCTCTTCATCCTACAGAACCATGAGGCCATGAGCAGGGTGGGCACTGGGGGGCAGCATTGTATTTGAAATGATGTAATAATTAACGTGGGCACTAGGAGGTAACAGTATATGTAAGATGATGTAATAAGCAATGTGAACTGCAGGGGGCTATACATACGCTATACATACAGGTTGTACAGGTTTACTGGATTTGTGCTTTCAATTTAAGGCCTAGTAACCAACCACTACAGAGTAGGTTACTGGAATTGAGAGTAGATTCTAAACTGGGCCcggtttcccaaaagcatcttagcattaagaacatcttaacatgaaaagagagagagagtgctcagagagtgctcagtgtgaagCTCTGGACCGTCTAAAAATCATCTTAACGCTAGAACCTTTTGGGAAACGCAACCTTGGGTCATGGAAACGGCTTAAAAGGGCTTGcatctccaaaatagcaactgCGTatgctaaagaaaaaaataaattaactttcaataaaagtaaatgcaaaaaaaaacaaaaaaaaaactaaaaactaatcAAGTAATCAAAGTAATTTTGCATTATTTCTACTGGTtcatttatcatgaaatttGGGGTCATAAAATTAAGATCCAAGGATTTTGTAGACAGATCAGtcattcacatttattttttatatttattctttttttttcactctccaACATTCAGGTTGACATGTTTTTTAATCTTTCTTTCTATATAATAACTAGTGGTGTCCCAATCAGATTATATATTTTGCCCCCAAATCCCATCTGAGACTCTTAATGCTAAATATCAGCCAATACAGATCTGATCCAATCATtagttgtttttaatgaataatacattaataatagatTCATTTAGTTTAGCAATCAATAACTGCTAATAACTTTATTGTACATCTTTAATAGTGtaaaataaagtctgatttaCCTTACTGAACATTCAGCTCCCAGTCCATTTAAAACAGTGCAATTAAGTTGCatgtatgtgaatgtgtgtttgtgtgtgtagacttgagtagaatttgaagtgttctttaagctccacacttaag

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00505 TYR; tyrosinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244424 lncRNA downstream 20377 32077364 ~ 32079824 (-) True G180454
TU244323 lncRNA downstream 340763 31758098 ~ 31759438 (-) True G180366
TU244331 lncRNA downstream 357211 31742731 ~ 31742990 (-) True G180373
TU244300 lncRNA downstream 463653 31636347 ~ 31636548 (-) True G180344
TU244298 lncRNA downstream 518264 31581704 ~ 31581937 (-) True G180342
TU244533 lncRNA upstream 98210 32205121 ~ 32208569 (-) True G180543
TU244530 lncRNA upstream 156663 32263574 ~ 32264739 (-) True G180540
TU244553 lncRNA upstream 215190 32322101 ~ 32326822 (-) True G180562
TU244564 lncRNA upstream 329414 32436325 ~ 32445752 (-) False tiam1
TU244569 lncRNA upstream 349635 32456546 ~ 32457411 (-) True G180570
XM_007247264.3 mRNA downstream 3401 32090689 ~ 32096800 (-) True LOC103041448
XM_022680726.1 mRNA downstream 28277 31894202 ~ 32071924 (-) True LOC103030555
XM_015605316.2 mRNA downstream 252232 31761901 ~ 31847969 (-) True LOC103030874
XM_007247265.3 mRNA downstream 558726 31519076 ~ 31541475 (-) True LOC103041957
XM_022681424.1 mRNA downstream 590980 31499084 ~ 31509221 (-) True LOC111195087
XM_022680727.1 mRNA upstream 138096 32245007 ~ 32262598 (-) True tmem135
XM_007247258.3 mRNA upstream 158086 32264997 ~ 32276777 (-) True cct8
XM_007247259.3 mRNA upstream 158086 32264997 ~ 32276776 (-) False cct8
XM_007247255.3 mRNA upstream 236428 32343339 ~ 32428813 (-) False LOC103038234
XM_007247252.3 mRNA upstream 236428 32343339 ~ 32428813 (-) True LOC103038234
TU244401 other downstream 165407 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1142434 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3249096 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 4533509 27562974 ~ 27566692 (-) True G179578
TU244539 other upstream 133268 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 1069852 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3326321 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile