RNA id: XM_007247265.3


Basic Information

Item Value
RNA id XM_007247265.3
length 1991
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC103041957
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31519076 ~ 31541475 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttcttcctGCAAAATGAACGGCTGCTCCTACAGACATGGCCTCTGTCGTGACTGAGATAGCTGCCGCTCTTCTGATTTTTACATGTGTTGTTCAGGGAGCCCGGAGTCTTCAAATAGAACATGTGGAAACTCTGAGTGCAGTAGTGGGCCAGAATGTCAGCCTGCCCTGCATCGTGGCAGAGAAACATGAAGTGAACATCAACCAGATTGAATGGGATGTAAGGTTTAAAGATAATCGTGAAAGACTTGTGGTCTTTAATCCTCAGTATCGCCCTTATTATTTTGTGCCCGTCCACCTGGAGCTGGTGAACAGAACAAACTCAACAATTCTACGGGGCTCCATCCTGCATTTGTACAATGTTACAAAGAAGGACAGTGGAAGCTATTTTTGTGATATCACCACCTTCCCTTATGGATCCTACCGAAACAGTACAGTAGTGCAAGTCAcagATCCCTGGATCTCAGCAGAGGTCGTGTCCCCAGGTGAGTCTCTGATAGAGGGGGACGAGGTGAACATCACATGTGTCAGCAATCCTCCAGCTGACAGATACATGTTATCATCTCTACAGAATGGTTTGCTACTGGAAAGCAAGAGTGGACATTTCACAATACAGAGCGTCACTCGTCACAGCGGTGACCTGATTTGTCAGCCCTCAAACCAACAAAGCCTCCAAGCTAATCTCAGAATGACCGTGGACTATATTGACAGCATTAAGTGTAACTCCAGCACACAGTTAGAAGTGGAGACGGGCACCAATCTGACAATAACTTGTGAGACAACGTCTTCAAGACCCTTGAGTTACACCTGGAGGAAGGGGAATAAGACAGTGTCCCAAAACACCACTATCAGCTTGTGGTCAGTCACTCCTGAGCAGGCCGGGACGTACTCTGTGATCATCTACGCAAGAAACCATAGTCGTCTCCAGAGGCAGAGGGATTTTGTAGTGACAGTGCTCAACAGGACGGTTGCGGACCAACTAAGCAGCACTATTGAAACGGAAACAACGTGGCAGATCACGAATGCCACAACTCTCACAACAGCTGGACCTGGAACGATAACAACAGTGACACAACCAAGCCATACCACCAGCACCACAGAGAACAGCCTGTATTACAACACCACTGCGCCATCTGCTGGAGACATCAGCACATTACAAGCAAACATCACCTCAGCTCAGGCAAAAATCACCAGAGCTCCTGCAAACTTCACCAGAGCACATGCAAACTTCACCAGAGCTCCTGCAAACTTCACCAGAGCACATGCAAACTTCACCAGAGCACATGCAAACTTCACCAGAGCTCCTGCAAACTTCACCAGAGCACATGCAAACTTCACCAGACCACCTGCAAACTTCACCAGAGCACATTCAAACAATACTGTGAAGAGCAACGCCACCTGGAGCATCTCTCTGAACACTTCAGCTGAGGGGAGCACACTGTCTGAGGGCTGCTGTCAGTGGCACAATACTACATCCAGCCTGAGGTCTACCAGAGTTCACCAGTTCACCAGTGCTCAACCAATTACCAGTACAAACAGCTTCACAGCTACTTCCACTATGATCACAGAGAAAACTGTGGAAGTAAAGAAAAGTGGCagtatggtggtggtgttcGTTCTCATCCCCATCCTTCTGTTGTTGGTGCTGATTGGCTTTCTTTACAGGAGGTACCGCATCCAAAAAAGaatGGATATGCCTCCACCATTcaagcctcctcctcctccagtgAAGTACACATCAGTGAGAAGTCAGGACATACCTGTGACTGACATCTTAGTATGATGACATCGTCCATCAAAACAGAGCAACTGCATACGGAGAGGATTTTCTGAAAGTGAAAGTCCATtgtcagaaaaaaagtttatttttatacagcCCTTATTTGTGCTTTTCTATTTTAGTACCAGAGGTGTCCaattattaagtaattaagtacaaatacttatatatttaaaaatgttttgttgactTTTTAcctctacttcttacat

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030163 protein catabolic process biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244254 lncRNA downstream 95886 31422385 ~ 31423190 (-) True G180315
TU244248 lncRNA downstream 122054 31339559 ~ 31397022 (-) True G180309
TU244233 lncRNA downstream 212729 31297767 ~ 31306347 (-) True G180295
TU244224 lncRNA downstream 366139 31152546 ~ 31152937 (-) True G180287
TU244222 lncRNA downstream 398600 31119112 ~ 31120476 (-) True G180285
TU244294 lncRNA upstream 23122 31564597 ~ 31564868 (-) True G180338
TU244298 lncRNA upstream 40229 31581704 ~ 31581937 (-) True G180342
TU244300 lncRNA upstream 94872 31636347 ~ 31636548 (-) True G180344
TU244331 lncRNA upstream 201256 31742731 ~ 31742990 (-) True G180373
TU244323 lncRNA upstream 216623 31758098 ~ 31759438 (-) True G180366
XM_022681424.1 mRNA downstream 9855 31499084 ~ 31509221 (-) True LOC111195087
XM_007247269.3 mRNA downstream 22358 31493584 ~ 31496718 (-) True timm10b
XM_007247268.3 mRNA downstream 28715 31466629 ~ 31490361 (-) True ilk
XM_007247270.3 mRNA downstream 54284 31458438 ~ 31464792 (-) True nhlrc3
XM_007247271.3 mRNA downstream 62522 31424971 ~ 31456554 (-) True LOC103043924
XM_015605316.2 mRNA upstream 220426 31761901 ~ 31847969 (-) True LOC103030874
XM_022680726.1 mRNA upstream 352727 31894202 ~ 32071924 (-) True LOC103030555
XM_007247264.3 mRNA upstream 549214 32090689 ~ 32096800 (-) True LOC103041448
XM_007247263.3 mRNA upstream 558726 32100201 ~ 32106911 (-) True LOC103041136
XM_022680727.1 mRNA upstream 703532 32245007 ~ 32262598 (-) True tmem135
TU244105 other downstream 561309 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 2667971 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 3952384 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 3952384 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 3993688 27524328 ~ 27525388 (-) True G179583
TU244401 other upstream 380820 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 698704 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 1635288 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3891757 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile