RNA id: XM_007247275.3


Basic Information

Item Value
RNA id XM_007247275.3
length 1047
RNA type mRNA
GC content 0.49
exon number 7
gene id psmg1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31280971 ~ 31287789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCAGGATAGCACAACTCGGCACAACACCCTCCCTGCTGTACAGCTCCACGCACTTGGGAAGGCACGGCTTTGCTAAATTGTGATAATGGCAACATATTTTGGAGAGGTTTTATCTGTTTACTCGAGGGCGGTGGAAGAGGATGAATACGACGATTTAGAGGACGAAAATGAAGAAGATGTACAAATTCGACGGGAAATAGAGGAGAAAAGGGAGGTGCAAGTTAGGTGGTGTCCAGAAGTTTCAAAAACCCTGGAGAGCTCTGGAGAGCTCCAATGTTCTAATATGATCATAGCAGTGGGACCCAGTGCTGCAGGTTTTGTCTCTGCGTATGTGCTGAGTGCTGAAGGTTGGACACAGGTAGGATGGGTTTCTTTGTGGAATGAAAGGAGCCGTGGTTCCAGTCGACCAGACACAGTTCCTCAGCCCGGAGAGCCGAGCTTCATCATATACCAGCAGAACAGCTCGCCATCTGTACTCATCTGCCAGTGTACATGTTACATTGCTGAAGACCAGCTGTTCCAGTGCGCTGAAAAAGTGTTGAGCAGCGTGCAGAGGAGAGGCCTGAATGTGACTGTTCTTTCCGACTCTACTCTGGCCGAGTATAAAACTCCAGACTACCTGAATGGAAGTGGTACTCCATTCCTGCGTGCACTGAAAACCAGCTCTTACACAGGCTCCATGCTCTGCCCTCTGCTAGAGCAACCCAACATTGTTACCGGCCTTCCTGCTGCAGTGCTCAGCCACTGCCAGGTTCAGCGCATCCCAGCCGTGCTCTTCCAGTGCTACACTGATGTCCTTCACCCAGACTCAGTTGCCATGGAAACCTATAAACCCGCCCTCTCATGTCTCAGCACATCAGTGAAGCTGGAGGCCTGCCCAAGTGTGGAGGTACTACAAAAGTTTACCCGGATCAGTGATGCCCAAAGCAACCTCTACACATAGAGGCAGCACTTTAGTGGTTCTGAAGTGTACAATGCACATGTTtccttttgttttgtaaaatatctatttttatgGCTATTAAACACAGACACTGTTCAATGTG

Function

GO:

id name namespace
GO:0043248 proteasome assembly biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K11875 PSMG1, DSCR2, PAC1; proteasome assembly chaperone 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244224 lncRNA downstream 128034 31152546 ~ 31152937 (-) True G180287
TU244222 lncRNA downstream 160495 31119112 ~ 31120476 (-) True G180285
TU244154 lncRNA downstream 182474 31098031 ~ 31098497 (-) True G180231
TU244139 lncRNA downstream 214591 31039016 ~ 31066380 (-) True G180217
TU244104 lncRNA downstream 330052 30946946 ~ 30950919 (-) True G180188
TU244233 lncRNA upstream 9978 31297767 ~ 31306347 (-) True G180295
TU244248 lncRNA upstream 51770 31339559 ~ 31397022 (-) True G180309
TU244254 lncRNA upstream 134596 31422385 ~ 31423190 (-) True G180315
TU244294 lncRNA upstream 276808 31564597 ~ 31564868 (-) True G180338
TU244298 lncRNA upstream 293915 31581704 ~ 31581937 (-) True G180342
XM_007247281.3 mRNA downstream 59714 31120776 ~ 31221257 (-) False erg
XM_015605342.2 mRNA downstream 59715 31120776 ~ 31221256 (-) True erg
XM_022681417.1 mRNA downstream 81010 31120776 ~ 31199961 (-) False erg
XM_022681418.1 mRNA downstream 88845 31120776 ~ 31192126 (-) False erg
XM_007247280.3 mRNA downstream 114852 31120776 ~ 31166119 (-) False erg
XM_007247317.3 mRNA upstream 38039 31325828 ~ 31341447 (-) True LOC103031187
XM_007247271.3 mRNA upstream 137182 31424971 ~ 31456554 (-) True LOC103043924
XM_007247270.3 mRNA upstream 170649 31458438 ~ 31464792 (-) True nhlrc3
XM_007247268.3 mRNA upstream 178840 31466629 ~ 31490361 (-) True ilk
XM_007247269.3 mRNA upstream 205795 31493584 ~ 31496718 (-) True timm10b
TU244105 other downstream 323204 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 2429866 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 3714279 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 3714279 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 3755583 27524328 ~ 27525388 (-) True G179583
TU244401 other upstream 634506 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 952390 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 1888974 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 4145443 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile