RNA id: XM_022681418.1


Basic Information

Item Value
RNA id XM_022681418.1
length 2345
RNA type mRNA
GC content 0.50
exon number 10
gene id erg
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31120776 ~ 31221257 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagCATGTGCGGAGTGGCGGCAGGCAGGCCGGCACAGATGAGCTCGCCGTGGCAAGAGGGCAGACACGACACTCCCCGCGGAGGCGCTGTCTGTGGTGAGTGAGGATCAGTCTCTGTTTGAGTGTGCGTACAGCGTGGCCCACCAGAGTAAAGCGGAGATGACGGCGTCGGCGGCCGCTGAGTACGGTCAGAGTAAACTGAGCCCGCGAGCGCCTCAGGACTGGCTCACCGCTCCGCCCGGCCGAGTCACCATCAAGATGGAGtgcagcagtggaggaggagctACAGGGGGTGGAGGAGGAACTGGAGGAGGGCAGGTGAATGGCTCCAGGAGTTCTCCAGATGACTGTGGTGTAGGTAAAGGGAAGATAGCAGGTGGAGGAGAAGGTGCTCCTATGACCTACAGCAACTACATGGAAGACAAACACATCCCCCCACCCAACATGACCACCAACGAACGCAGAGTCATCGTTCCtgcagATCCCACACTGTGGTCAGCAGATCATGTGCGTCAGTGGTTGGAGTGGGCAGTGAGGGAGTATGGCCTGCTGGAGGTGGATGTGTCCCTGTTCCACAACATTGATGGGAAGGAGCTGTGTAAGATGACCAAAGAGGACTTTCAGCGCCTCACACCGAGCTACAACGCCGACATCCTGCTGTCCCACCTGCACTACCTGCGCGAGACTCCACTTCCCCACTTGACCTCAGACGATGTTGACAAAGCCTTGCAAAACTCTCCGCGGTTAATGCATGCCCGTAACACAGgAGGCGCAAGTTTTATCTTCCCTAACCCTCCAGTCTACCCACCTGATACCCCCAGGGCTCCTGCAAGACCAGACTTGGCTTATGAAGCTGCCAGACGGTCTGCCTGGGCACCCCAATCGGCATCGGtcaataaagtCTCACAGTCCTCACCTGCCATTGTCACCAAAACAGAAGAGCCACAGAGGCCACAGCTCGATCCATATCAGGTTTTGGGACCCACAAGCAGCAGGTTGGCAAACCCAGGCTCAGGTCAGATCCAGCTGTGGCAGTTCCTGTTGGAGCTGCTGTCAGACAGCACCAACTCAGGCTGCATCACGTGGGAGGGCACCAACGGCGAGTTCAAGATGACGGACCCGGATGAAGTGGCGCGTCGCTGGGGCGAGCGCAAGAGCAAACCCAACATGAACTATGACAAGCTGAGCCGCGCGCTGCGCTACTACTACGACAAGAACATCATGACCAAAGTGCACGGCAAGCGCTACGCCTACAAGTTCGACTTCCACGGCATCGCTCAGGCCCTGCAGCCCCACCCGCCCGAGTCTTCCGTCTACAAGTACCCCACAGACCTGCCCTACATGAGCCCCTACCACGCCCACCCCCAGAAGATGAACTTTGTGTCCCCTCACCCCCAGGCACTGCCCGTCACATCCTCCAGCTTCTTCGCCGCACCTAACCCCTACTGGAACTCGCCCTACCCCGGCCCACGCCACCCGGCCGCCCACATGCCCTCCCACCTGGGCACCTATTACTAGCACCTAGACTGGAGAAACGAGGGAATTAAAAACGTACATCTCACCTGAGTCCAACTGGAGCGCCCCCTAGAGACTAAACTGGGCAAATGGGGGAAGAAAACTGAGCCCGCTGAGGCAAGCAGACAAAAACATCCAGGGGCAGAATTAAAACAGGAGACATGAGGGAACTAAGGAATCGCAGAGGAATTTCTTTTACAGGGCTGGTAGGGGAGGTAGGGAGGGAAGACAACAACTAAAGGAGCTTGTTGAGAACTAAAAGAATGTTGTGACTAAAAATCAGGTAATGAATAGACCAGGGCTGTAAACGtacactaaaaaataataatgcattctAATGTGTGCATTAATCCAACATGAATATAACAGAtcacatcaaataaaaaaaaaattaaaaacacatacacaaagtCGTAGTCTaaagtacagtagatacagtactGTAATAAAATACTATCTGaccagtaagtgtttattttattaaaaaaaacactgatattagcattaacaataatacaaataaataaaaataattaaatactgtaaataaataataatatattgtattttattgtcagAATGCCACAAGAAAGCTCAATTATTACAGTCACCTTCCATTTACTTTTACTAGTTTACAAGATCAATCCCTCAGAAAATTCAGCCAAGATGTGTTTATAATCTTTTGTGTGCTTCTTAAGTTTACAAAAGgagatgctaagctaacgctgctacACTAAACAGTCACAGGTTTGGCActgaagtataaattggcctttataACGTCATCCATCTCATCTATTTTGTAAATTCAtgccaaagtaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244222 lncRNA downstream 300 31119112 ~ 31120476 (-) True G180285
TU244154 lncRNA downstream 22279 31098031 ~ 31098497 (-) True G180231
TU244139 lncRNA downstream 54396 31039016 ~ 31066380 (-) True G180217
TU244104 lncRNA downstream 169857 30946946 ~ 30950919 (-) True G180188
TU244118 lncRNA downstream 206809 30911450 ~ 30913967 (-) False G180197
TU244233 lncRNA upstream 105641 31297767 ~ 31306347 (-) True G180295
TU244248 lncRNA upstream 147433 31339559 ~ 31397022 (-) True G180309
TU244254 lncRNA upstream 230259 31422385 ~ 31423190 (-) True G180315
TU244294 lncRNA upstream 372471 31564597 ~ 31564868 (-) True G180338
TU244298 lncRNA upstream 389578 31581704 ~ 31581937 (-) True G180342
XM_007247282.3 mRNA downstream 63489 30972480 ~ 31057287 (-) False kcnj6
XM_022681416.1 mRNA downstream 63489 30972480 ~ 31057287 (-) True kcnj6
XM_022681415.1 mRNA downstream 187962 30926168 ~ 30932814 (-) True dscr3
XM_022681414.1 mRNA downstream 245186 30857757 ~ 30875590 (-) True pigp
XM_007247289.3 mRNA downstream 271974 30801519 ~ 30848802 (-) True hlcs
XM_007247275.3 mRNA upstream 88845 31280971 ~ 31287789 (-) True psmg1
XM_007247317.3 mRNA upstream 133702 31325828 ~ 31341447 (-) True LOC103031187
XM_007247271.3 mRNA upstream 232845 31424971 ~ 31456554 (-) True LOC103043924
XM_007247270.3 mRNA upstream 266312 31458438 ~ 31464792 (-) True nhlrc3
XM_007247268.3 mRNA upstream 274503 31466629 ~ 31490361 (-) True ilk
TU244105 other downstream 163009 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 2269671 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 3554084 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 3554084 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 3595388 27524328 ~ 27525388 (-) True G179583
TU244401 other upstream 730169 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 1048053 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 1984637 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 4241106 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile