RNA id: XM_007247317.3


Basic Information

Item Value
RNA id XM_007247317.3
length 2522
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC103031187
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31325828 ~ 31341447 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCGTctgtgtgaagagtgtgaaaGCTTGAAACTTGCAGCACTGAAGACTGCCAGAGCGCGTGGCCATCGGCTTTCAGAGAGTGCAAGGGCTTTAAAGATCTCCATCCATGGATTTTGGAAGTGAGAGCGACTCGTATTCAGACAGTGGCTCGGATGACAGCATCTGCTCAGGTTCGTGTCATGCCGAGCACATCCTGCAGGTGCTGAACACCTTCCGTCAGAGCGGCACCTTCACAGATGTGGTGCTGCTGGTGGAGGACCGAGAGTTCCCATGCCACCGGGCCACACTATGCGCCAGCAGCCAGTACTTTCGCACCATGTTCATAGGGCAGCTGCGTGAGAGCCGGCAGACTGCAGTGCGTCTGAAGGAAGTGTCAGCTGCCGCCATGGAGCACCTTCTGGACTTCATCTACGAGGGACGGGTGAGGCTACAGGAGGAAAGCGTGGAGAGTGTCTTCCATGCAGCCGACCTGCTGGATGTTCCAGCACTCTCCCGGGCCTGCGTGGACTTCCTGGAGAAGCGAATGTGTCCCTCCAACTGCCTGGGCCTCATAGACTTTGCAGGGCTCTACTCAATAGATCAACTGCTGGTGCGCTGCCAGGGCATCCTGTACCAAAGCTTTGAAAAGGTCTCGAAGCAGGAGGAGTTTCTAGAGCTGCCGTTGGACAGGGTGTTGGAGTTATTGGACTCTGAGAAGCTGCAGGTTCAAGAGGAGGTGCTAGTGGAGGCAGCACTGGGTTGGGTCTACCACCGGCGCAACCAGAGGAAAGCAGCTCTCAAGAAGTTGATGGAGAGGCTCAGGCTGCCCCTGCTGGATCCTGTGTTCTTCACAGATAAGCTGGAGGCAGATGAGCTCATGCAGGAATGCTGTGAATGCAGACTCCTGCTTCAGGAGGCCAGAAAGTACCAGATCTACGGCAGGGAGATCAGCTCTGAGAGAACCAAACCCAGAAGGCGATCCGGCTGGGCTGAGATGATTGTGGTGATCGGAGGTTGTGACAGAAGTGGAATTTCTAGGCTCTCTTTTGCAGAGAAACTTGATCCCATCTCAGGGAAATGGCTTCCTTCAGCCACTCTGCCAGGCTACTCCAAATGTGAATTTGCTGTGTGTGAACTCCAGAACGACATTTATGTATCAGGTGGGCAACTGAATAGCTCAGACGTGTGGCGCTTCATGTCTCAACTGAACCAGTGGGTGCGAGTGGGCGGCCTACTAAAGGGCAGATGGCGACACAAGATGGCTTCTCTGAGGGGAAAGCTGTACGCTGTAGGCGGTTATAACGGCCACCAGAGGCTAAGCAGCGTGGAGTGCTTCAGTGTATTTGAGAATGCCTGGAAGGCTGTGGCTCCTCTGCTACTGCCAGTCAGCTCATCTGCTGTGGTCAGCTGTGCTGGAAAGCTATACGTTATTGGAGGGGCTCTGAGTGAAGAATGCAACACAAACAAGgtgcaGTGTTACGATCCCGTGAAAGACCAGTGGACGTATGTGTCACCCACTCCGTTCTCTCAGAGATGCATAAATGCAGTGTCCCTTAACGGCTCCATCTACGTGGCTGGAGGTCTCCTGGACGTCATCTACTGTTACACTCCCAAGATCGATGCCTGGAGCAAAGCTGCAGAGCTGGCCATGAAAGTGGAAAGCTGTGGACTGACTGTGTGTAACGGAAAGGTGTATGTCGTGGGCGGGCGTGATGAGTTTGCAACTGCCATCGACCGCATGTGGGCGTTTGACCCGGTGAGCGGCCGGGTGACAGAGGAGATGCCGCTGTCACGCAGCCTGAGCAACCACGGCTGTGCCACCATCACGCAACACCTAGAAAACAAATAAGGCAGTGCTCAGTGATCAGGAGGAAAGCGGACTGACAGCTTCTTTGTGTTCCTACAGTTGCTGTAAGACTTGCTGAAGAGCCAGAAAAATGAAGTTAACTGCTGCTGAACTATAATGTGactatattgttgctgtcataCAAAATCCTCATATCTCAAAAttggcaactttacagaaaagaAGGAAACAAACTACGTAATTACTTTGAATTCAAAAAAGTAACCTTGGACCACTTCTTTTAGtttattcatcatgaaattctgagataatataaacaacattacaaaaatgaaaatgctGGGTTTTTGCCTGACAGTGATGGTATGCTGATCTTGAAATCACTACAAAGACACACATATTCCAGGGGTTTCTGTCATATATGAACTTTATACTGTGAAAAACAAACTGTGACATATTagatagagagtgtgtgtgtgtgtgtatgtataaataaaagagagagagagagagagagagagagagagaaagaatgccCTTCAGTAATTAAGATGTAGTAGAGCTTGTAAAATTCTTGTGTAGTACTCAAAGCTTCTTGATAACTGTGAGCTAATATTCCTTCTCAAAACGTCCATGCTTCTTAAGGACTTGTGTAATACACCAAGTCTGCTATTGTGTTATTATGCTTTTCTATAGTTTGTATATGTGTCATTTTTGATTGTGAAAACACtgta

Function

GO: NA

KEGG:

id description
K10461 KLHL24_35; kelch-like protein 24/35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244233 lncRNA downstream 19481 31297767 ~ 31306347 (-) True G180295
TU244224 lncRNA downstream 172891 31152546 ~ 31152937 (-) True G180287
TU244222 lncRNA downstream 205352 31119112 ~ 31120476 (-) True G180285
TU244154 lncRNA downstream 227331 31098031 ~ 31098497 (-) True G180231
TU244139 lncRNA downstream 259448 31039016 ~ 31066380 (-) True G180217
TU244254 lncRNA upstream 80938 31422385 ~ 31423190 (-) True G180315
TU244294 lncRNA upstream 223150 31564597 ~ 31564868 (-) True G180338
TU244298 lncRNA upstream 240257 31581704 ~ 31581937 (-) True G180342
TU244300 lncRNA upstream 294900 31636347 ~ 31636548 (-) True G180344
TU244331 lncRNA upstream 401284 31742731 ~ 31742990 (-) True G180373
XM_007247275.3 mRNA downstream 38039 31280971 ~ 31287789 (-) True psmg1
XM_007247281.3 mRNA downstream 104571 31120776 ~ 31221257 (-) False erg
XM_015605342.2 mRNA downstream 104572 31120776 ~ 31221256 (-) True erg
XM_022681417.1 mRNA downstream 125867 31120776 ~ 31199961 (-) False erg
XM_022681418.1 mRNA downstream 133702 31120776 ~ 31192126 (-) False erg
XM_007247271.3 mRNA upstream 83524 31424971 ~ 31456554 (-) True LOC103043924
XM_007247270.3 mRNA upstream 116991 31458438 ~ 31464792 (-) True nhlrc3
XM_007247268.3 mRNA upstream 125182 31466629 ~ 31490361 (-) True ilk
XM_007247269.3 mRNA upstream 152137 31493584 ~ 31496718 (-) True timm10b
XM_022681424.1 mRNA upstream 157637 31499084 ~ 31509221 (-) True LOC111195087
TU244105 other downstream 368061 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 2474723 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 3759136 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 3759136 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 3800440 27524328 ~ 27525388 (-) True G179583
TU244401 other upstream 580848 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 898732 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 1835316 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 4091785 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile