RNA id: XM_022681293.1


Basic Information

Item Value
RNA id XM_022681293.1
length 2916
RNA type mRNA
GC content 0.49
exon number 12
gene id lmnb1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24524813 ~ 24542250 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCCATTTCTTTCATTCGGTTGGGAGACAAAGTAGGGGCTTTGTGGCTTTTGAAtcccttttttcctcttttgtgGGTTTTCCTGAATTCTTATAGCCATAATTTTATTGTGGGATTAGTTGGAAATTAATTGCTTACTTTTATATTactatttaaactaaaaataattctCCGCTGAAGGCCCTTATTTTGTAGTCGCTGGGCTAACGCTACTATATTTAACCGTTTTTTCGTAATTGTGTTTATGAGGGGATATTAGTTACACACTGCAGGATCTTTCACGCGGCTTTTTTTATTGGACCTTTGGACTGGTTCACACGCTACAACGGAGCGCTGAGGACATTCGGTTTACTTGAATAGAAGCATTTTGTGGATTTAGGCTTGTTCTGTTAGCTACAATGGCGACTGCACCCTCCACGCCGGCCGGTCGGAGAATGAGCAGCACGCCGCTGAGCCCCACGCGGATAACGCGGCTGCAGGAAAAGGAAGAGCTCAGTAATCTCAATGACCGCCTCGCCATTTACATCGACAAGGTGCGGAGCCTGGAGTCCGAGAACAGCGTCCTGCACCTGCAGATCTCCGAGAAGGAGGAGGTGAGGAGCCGCGAGCTCACAGGCTTGAAGGCTCTGTATGAGACGGAGCTGGCGGACGCCCGCAGGTCTCTGGACGACACGGCCAAGGAGCGCGCCAGGCTGCAGATTGAGCTGGGGAAGATCCGGACCGAGCACGAGCAGCTGCTGCAGAGCTATGCAAAGAAAGACTCAGACCTGGCTGGTTGTCAGGCCCGGCTTAAAGATGTGGAAGCTCTGCTCAACTCTAAAGAGGCAAGTCTGGCCACTGCACTGTCTGAGAGGAAAGCTCTTGAGGGATCACTGGCTGACCTGCAGGCCCAGATCCAtgagCTTGAGGCGAGTTTGGCATCAGCAAGGAAGCAGCTGGGGGATGAGACACTGCTGAGAGTGGACCTGGAGAACCGATGCCAGAGCTTGGTGGAGGAGCTTGAGTTTCGCAAGAACATGTTTGAGGAGGAGATCAAGGACACTCGGCGCAGACATGAGactagactggtggaggtggacTCTGGCCGTCAAGTCGAGTACGAATTTAAGCTGGCCCAGGCTCTGACTGACATGAGACAGCAGCACGATGACCAAGTCAAAGTTTACAAGGAGGAGATGGAGCAGACGTACATGGCTAAGCTGGAGAACGTGCGCCTTTCCTCCGAGATGAACAGCAGTTCTGCTAGCATGGCTCGTGAGGAGCTGAAGGAAGCTTCTCTGAGGGTCGAGAGCCTGACCGCTCAGCTGTCTGGTCTGCAGAAGGAGGAAGAGGAGACTTTGAACAGAGGCAGCAGTAGAGGAGGAGGGGAGTGTCAGGATCAGGCTCGAGGCTGGCAGGACCGTATCAATGAGCTGGAGTCTGCTCTGGCTCAGGAGAAGGACCTGAGCCGCAGGATGCTCGCAGATAAAGAGCGTGAGATCTCTGAGATCCGAGCCAAGATGCAGCTGCAGCTGGAGGAGTACGAGCAACTGCTGGATGTCAAACTGGCCCTGGACATGGAGATTAATGCCTACAGGAAACTGCTAGAAGGAGAAGAGGAGAGACTGAAGCTGTCTCCCAGCCCCTCGTCCCGTGTAACCGTGTCCCGAGCTTCGTCCAGCCGCAGCGTTAGAACCACGCGTGGGAAGAGAAAGCGTGTGGACGTGGAGGAGTCTGAGGCCAGCAGCAGCGTCAGCATCGCCCACTCTGCCTCTGCCACTGGCAACGTCTGCATCGATGAGCTCGACGTGGACGGGAAATTTATCCGGCTCCACAACACCTCCGATCAGGACCAGCCAATGGTGGGGTTTGAAATGACCAGAACTATTGGAGATTCTTCTGCTACCTACAAGTTTACTCCCAAATATGTTCTGAAAGCTGGACAGAAAGTCACTaTCTGGGCATCTAATGCAGGCGTGAGCTCGAGCCCTCCAACTGACCTAATCTGGAAGAGTCAGAGCTCTTGGGGTACTGGAGAAAATGTGAAGGTGGTCCTGACCAATGGCGATGGAGAGGAAGTGGCTGTAAGAAGTACAGTGTTCAAGACTGCCACCgtagaagaggaggaagaggatgatgaGGGTGTGGAGGTTGTTGAGGAACATCTCTTCCATCAGCAGGGAGATCCACGCGCTGCCAAGAGGGGCTGCTCAATCATGTGAGCGCAGCAACACTACCCTTCCACTACAACCAGTCTCAGCTGCCAATACTATAACCACCTCAGAACTATTTTTGTATCACTAGTATAACTgagtgatttgatttttttttcttgatttttagttttaaatgattgtaaaccatttttggtacatttctatttttattttgtatgtgaATGCAGAAGTTTTTGCATCGCAACTTGCTTTTGTATAAACCAAAATTTTGTGATCAGTTGGGGACTCCTTAGTGAGACAGAGAGCTCTGTGACAGTTTAGGCAGCTTTTGCAAAATCACCCAGTCCTCCAGGTGCTGTGATCTTACCTTTTTTATGtgtatctcaattttttttaaagatagcaTTTTAAAGGCCTCTTTATAGAAGTTATAATTTTATACTAGCTTTCTAGTTTTTAGCTGGAGGGGTTTGTTGCATATAATGGAATGTAGACTAGCTCAAGACATGGGAAAATGTCGAAATGGATTGCCCATTCAGAGAACACTTGAAAAGCAGGCAGACAGGTGTGTGCATTCATGTAGTAAACAGTGTTTAATGATGAGGACTTCCTCATGCATAAGTCTGCAGTTCACCACATGGTGTCAGTCTAGAGTCTCTGAAGGCAGTCAGACAAACGGCAGTAAAAACTGAAGAACCTTTCAGGCTGTTGTGATTTAAAATTGATTGTATGCTATTAAGGAAAGATTGGTCTCAAGag

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07611 LMNB; lamin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242294 lncRNA upstream 11605 24512588 ~ 24513208 (+) True G178844
TU242225 lncRNA upstream 222966 24298112 ~ 24301847 (+) True LOC111195075
TU242228 lncRNA upstream 222966 24298112 ~ 24301847 (+) False LOC111195075
XR_002651472.1 lncRNA upstream 223294 24298121 ~ 24301519 (+) False LOC111195075
TU242218 lncRNA upstream 231469 24291975 ~ 24293344 (+) False G178805
TU242308 lncRNA downstream 44257 24586507 ~ 24587635 (+) True G178853
XR_002651474.1 lncRNA downstream 56623 24598873 ~ 24599611 (+) True LOC111195077
TU242343 lncRNA downstream 56625 24598875 ~ 24599608 (+) False LOC111195077
TU242351 lncRNA downstream 116157 24658407 ~ 24678663 (+) True G178873
TU242389 lncRNA downstream 253233 24795483 ~ 24817313 (+) True G178896
XM_007252431.3 mRNA upstream 15233 24505637 ~ 24509580 (+) True phax
XM_007252430.3 mRNA upstream 41930 24472206 ~ 24482883 (+) True gramd2b
XM_007252428.3 mRNA upstream 72820 24447792 ~ 24451993 (+) True LOC103032894
XM_022681286.1 mRNA upstream 834458 23541850 ~ 23690355 (+) True LOC103037096
XM_022681285.1 mRNA upstream 1010102 23503307 ~ 23514711 (+) True ppp2cb
XM_022681295.1 mRNA downstream 48723 24590973 ~ 24596595 (+) True LOC103034699
XM_022681298.1 mRNA downstream 48723 24590973 ~ 24596595 (+) False LOC103034699
XM_022681297.1 mRNA downstream 48723 24590973 ~ 24596595 (+) False LOC103034699
XM_022681296.1 mRNA downstream 48723 24590973 ~ 24595281 (+) False LOC103034699
XM_022681303.1 mRNA downstream 61406 24603656 ~ 24676046 (+) False megf10
trnam-cau_40 other upstream 22868 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 70191 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 816964 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 1559824 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 1815256 22689001 ~ 22709557 (+) True G178388
TU243054 other downstream 2371636 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 2982068 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 2982068 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 6597094 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 6890948 31433198 ~ 31433909 (+) True G180266

Expression Profile