RNA id: XM_022681306.1


Basic Information

Item Value
RNA id XM_022681306.1
length 1536
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC103039311
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25170423 ~ 25178447 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCCCTGGCTTGGGGAGACAATAGTGAATCATATGCTGCCTGAATGGTGTATTGATGCCATCTACAGGGCAGAAAGGTGTTTTCAGAATAAAAGgtgctacagcagcagcaggactgACAGAGTTGCTTTCAGAGCTTCTGGAGTCTGAGAATAAACCAGTACAGaaTGATGGCATCTGTAGCATGTGGTCCACAGGATTCCTCCACCGAAGAGCTTCATTTGCAAAGGAGAGGACTGCGTCTTCCATACCAGATCTTTCCAGAGACAGCGGAAGACTGTGAGGCACTGGAGAGGCCAGTGGGTCAGAGAGGCCGCCTGCCGTCTATAGTGGTGGACCCCACCCAGGTGAGCGAGGAGGAGAGAGGTGGGCTGCCGTGGCCTCTGCAGAGACACGCTTCTGTGTCCGAGGAGGATGATGAGTCTTTCCAGGATTGTGCATCACAGAACAGCGAATCGGAACAATCAGAGCAGGGGAATGCAGAGAGCAGTGGAGATGAGCGGGGGCTTCATATCAATCACTCACCAGCTAGTGTACAGCCTGGACTGATGGACTGCTCTCGTCTCACTCCTCCACAGTCCCCCACCTCTCCCGAAGTAGCACCACCCTGCTTTAGAGGCTGAACCAtcacaaaaatgagaaatgcaagAAGAAAAGCTGCCTTAGGAGCTCCACACAGCAGTTCACACCTGTACTTCATTCTTAAAGATTAAAACATATTCagcatattttcttatttgaggGAAATGTAATGGTTTCAGGCTTTAAGATGCTATTAAGTTTAAGAGTGGAGAACTTTTGCAAACAGAAAGTGCAGttaaatggttttatttatttatttattttttaagctttaGTTGAAGTTTCTAAGCATAGTGAATGAACTATGACCTAACATGAACTGTAAACCCACACAAGAACGGGGGTGCTTGAGGAGGCTTCCCCAGATTTTAGGATGATTATTTAGCTGCACCagctaaaattaattaataatgaataatctgGGCAAAGTAAAGACCTGTGCGCTTGTTTTATGAGGTCAAACACTGCTTAGGTTAATGACGCATTTTCATCCCAGAGATGATTCACCTCCAAATCTTTTCCTCGCCAACTGCCGACCATTTGGATGCATCTCACTAACACATAGAATGATAGTGTATTATAAACCAGTCCTGTGACTGAAAGCGGCCTAATATACATTGCTATCAGCAATGTTATTGACCTCCTCTTAGCTGACTAGCATGTGCATCAGTGTTAAATGTGTCTACACATTATGTTCTGTTCTATTGAAGATTCCACAGTGAATGATGTGCTGTATATGCTGCTTAACATTTCAGTGACGTTATGTATAAGTTCAAGCtattctgtgattttattttctaaggaagttatttgtattatttttcctttctttttgtaGTTTTAGTGTTCTGGAGcattctctttgtctttttattgtgCTTCCTGCTTTCATTGCCATAATGCAGAGATTACACattatagcttttttttaataaaatatctatgttttccttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242543 lncRNA downstream 2286 25167341 ~ 25168137 (-) True G178999
TU242526 lncRNA downstream 34407 25135452 ~ 25136016 (-) True G178986
TU242493 lncRNA downstream 147532 25022639 ~ 25022891 (-) True G178963
TU242490 lncRNA downstream 150260 25013702 ~ 25020163 (-) True G178962
TU242478 lncRNA downstream 207893 24961165 ~ 24962530 (-) True G178954
TU242664 lncRNA upstream 65744 25244191 ~ 25244617 (-) True G179067
TU242666 lncRNA upstream 79330 25257777 ~ 25259641 (-) True G179069
TU242631 lncRNA upstream 82072 25260519 ~ 25276628 (-) False G179057
TU242632 lncRNA upstream 82072 25260519 ~ 25279340 (-) False G179057
TU242638 lncRNA upstream 82072 25260519 ~ 25279475 (-) False G179057
XM_007252488.2 mRNA downstream 118291 25046214 ~ 25052132 (-) True kiaa1024l
XM_007252443.3 mRNA downstream 190334 24962626 ~ 24980089 (-) True LOC103037512
XM_022681299.1 mRNA downstream 580760 24587260 ~ 24589663 (-) True c20h5orf63
XM_007252436.3 mRNA downstream 584018 24547003 ~ 24586405 (-) True march3
XM_022681294.1 mRNA downstream 593267 24547003 ~ 24577156 (-) False march3
XM_015606669.2 mRNA upstream 24878 25203325 ~ 25207386 (-) True LOC103025094
XM_007252457.3 mRNA upstream 116276 25294723 ~ 25303083 (-) True thsd1
XM_007252459.3 mRNA upstream 126001 25304448 ~ 25321697 (-) True vps36
XM_022681316.1 mRNA upstream 180785 25359232 ~ 25363323 (-) False LOC103043328
XM_022681315.1 mRNA upstream 180785 25359232 ~ 25363323 (-) True LOC103043328
TU242520 other downstream 36267 25130982 ~ 25134156 (-) True G178982
TU241888 other downstream 2213197 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 2229912 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 2497740 22672132 ~ 22672683 (-) True G178450
trnam-cau_39 other downstream 2633924 22536428 ~ 22536499 (-) True trnam-cau_39
TU242660 other upstream 26382 25204829 ~ 25207353 (-) False LOC103025094
TU243326 other upstream 2261784 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 2285592 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 2294908 27473355 ~ 27477978 (-) False ift46
TU243318 other upstream 2344687 27523134 ~ 27524109 (-) False LOC103038646

Expression Profile