RNA id: XM_007252459.3


Basic Information

Item Value
RNA id XM_007252459.3
length 2422
RNA type mRNA
GC content 0.43
exon number 14
gene id vps36
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25304448 ~ 25321697 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACACCGGAAGTAAACATTCACTGGGAAGTGTCACGTACTAAACGTACAGAATGTATTAATTCTGCTTTAATAATCCGCAAAATTATTCCTTTATACACTTAAAATGGATCGATTTACGTGGGCTAATGGGCTTCTCGAAATGAACGAGACTTTAGTGATCCAGCAGAGAGGAGTCAGACTGTATGATGGAGATGAGAAGGCAAAGCTTGACGTAGGAGTTGTTCTTCTGAGCACACATCGTTTACTTTGGAGGGACCAAAAGAATCATGAGTGCTGCATATGTATACCACTGTCTCAGATCATATTCTTTGAGGAGCAGGCTGCAGGCATTGGAAAGAGTGCCAAGATTGTTATTCATCTGCATGCAGCCCCTGCCAATAAGGATCCCGGACCCTACCAGCACAGCAAGTTCTCCTATATTAAGCTGTCCTTTAAGGAACATGGGCAGATTGAGttttacagGCGGCTGACAGAGGAAATGACCCAGAAGAGGTGGGAGAATACACCAGTGTCGCAGCCCATTGACACCACAGCTGGACCAAAGGCAGGAAGGACACGCGCAGTAGGGATTGTTGGCATTGAGCGGAAGCTGGAGGAGAAGCGGAAGGAGACtgataaaaacatttcagagGCCTTTGAAGATCTCAGCAAGCTTATGGAGAAGgccaaagagatggttgagctgtcCAGGTCCATCGCCAACAAAATCAAAGACAAACAGGGCGACATCACAGAGGATGAGACTATCCGCTTCAAGTCCTATTTGCTGAGCATGGGTATCGCCAACCCTGTAACCAGGGAAACGCACGGATCTGGCACACACTACCACATGCAGCTCGCTAAACAGCTGGGAGACATGCTGCAGGCACCACTGGAGGAGCGAGGTGGTATGATGGCCCTTACAGAAGTCTACTGTCTGGTGAATCGAGCCAGAGGCATGGAGCTTCTTTCTCCAGAGGATCTAGTGAACGCCTGCAAGATGTTTGAGTCTCTAAAGCTCCCTCTGAGGTTGCGAGTGTTCGACAGTGGTGTGATGGTGGTTCAGCTGCAGTCTCACAGTGAAGAGGAGATGATTGCGTCTGCTCTCGATAATGTGTCTGACAAGGGTTCCTTGACAGCCGAGGAGTTTGCTAAACTTTTAGGACTGTCTGTTCTTCTGGCAAAAGAGAGGCTGCTGCTGGCTGAGAAAATGGGGCACCTATGCAGAGACGACTCGGTGGAAGGCCTGCGTTTCTATCCCAACTTGTTCTGATGCTTGAGTACGATGCTTCATCTGCAGTTTCTACTGTACGACTCTTTCAGGCACCTCTGTACAGAACAGAACACTGCTCGCTCTCGCTGTGTGGCCTGGACTTGTGGGACTCAGAACAACCACCACTATTCAACCACTGTATAATAATACCATAATAATTAGCTGTTGGTACAGCCTTGTGCAAGTGTTTGGGTACCTATGGTCAACCGACACTCTAACTCTATGCTAACTTAAATATGACAGTACTCTCTGAcaataaaatatgaaagaaagaaagaaagaaatgtctAATTTAAGTATATAACCTTAGTCATATTTTAGAATGCACTTTAGTGTGTTCTCTGTAGAAAATGTGAActtacatttatacatgtacagtattttgACAAAGGATGCCCAAAAGTTTGCacaagaatatatataaatgtataaaaatatataaatgtcatATCTATGttaactgtaaaaaacacaGTTGCTGAATAAGGTAGAGTAGGCTGTCCTAAACAGTGTGTCTACAATCCTAAACAGCTTAGGCTGAGGGCCTTGGTtgacagagtgaggtagtagACTGAAAGGTTTCTGCTCAGCTCTGCTTAAAGCAGGGATGCTCATTCCTGGTCCTGGATATTCTACCATCTTGCCGAGTTCAGCTCCCCCCCTAATCTTACACACCTGATCCAAGTAATCAAGGCCTTCAGGGACACGAGAACATTCTAGACTCAGGTTTGTTAGATAAGAAATCTTCATAATCATAGATGAAAGTATCTAGCTATTTTTCCCCAAGACTGTTACTGCATTTGGACTTTAAAGGGCAGCTTATATGTTCAAAAGGGTatctaaaattttaaaaacactataaaatacCATCAACATGAACAAATAAATCATTTCATGGTGTATAAATTAAGCTGTTCTAGACAAATGTATGCAGCTGGAATTTTTTCATAAATGCAGAGATTAATGGGCCTGCCACCATCTGAACTGTCTTCCACCACAGATATTCaacatgtaattaaaaacctttggtATAAAAATTTCAACTTCCTatgttttgtttacatttatgaTCATATGACTGTGAGAGAGCCCTTGCTAAAAATAGGTTCTGTTTAGTGGAACATTGTTCATTGTGTTTTATGAACAGtacagtgtaataaaaaaaaaa

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0043130 ubiquitin binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K12190 VPS36, EAP45; ESCRT-II complex subunit VPS36

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242676 lncRNA downstream 9331 25293675 ~ 25295117 (-) False thsd1
TU242672 lncRNA downstream 13509 25289115 ~ 25290939 (-) True G179075
TU242638 lncRNA downstream 24973 25260519 ~ 25279475 (-) False G179057
TU242645 lncRNA downstream 24973 25268081 ~ 25279475 (-) False G179057
TU242648 lncRNA downstream 24973 25268081 ~ 25279475 (-) False G179057
TU242706 lncRNA upstream 17100 25338797 ~ 25358939 (-) False G179085
TU242707 lncRNA upstream 30884 25352581 ~ 25358841 (-) True G179085
TU242693 lncRNA upstream 42235 25363932 ~ 25441421 (-) False LOC103043022
TU242736 lncRNA upstream 145503 25467200 ~ 25467583 (-) True G179106
TU242770 lncRNA upstream 185849 25507546 ~ 25508333 (-) True G179129
XM_007252457.3 mRNA downstream 1365 25294723 ~ 25303083 (-) True thsd1
XM_015606669.2 mRNA downstream 97062 25203325 ~ 25207386 (-) True LOC103025094
XM_022681306.1 mRNA downstream 126001 25170423 ~ 25178447 (-) False LOC103039311
XM_007252449.3 mRNA downstream 126916 25170423 ~ 25177532 (-) True LOC103039311
XM_007252488.2 mRNA downstream 252316 25046214 ~ 25052132 (-) True kiaa1024l
XM_022681316.1 mRNA upstream 37535 25359232 ~ 25363323 (-) False LOC103043328
XM_022681315.1 mRNA upstream 37535 25359232 ~ 25363323 (-) True LOC103043328
XM_007252460.2 mRNA upstream 43928 25365625 ~ 25472244 (-) False LOC103043022
XM_015606674.2 mRNA upstream 43928 25365625 ~ 25472244 (-) True LOC103043022
XM_007252465.2 mRNA upstream 158491 25480188 ~ 25506865 (-) False LOC103044157
TU242660 other downstream 97095 25204829 ~ 25207353 (-) False LOC103025094
TU242520 other downstream 170292 25130982 ~ 25134156 (-) True G178982
TU241888 other downstream 2347222 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 2363937 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 2631765 22672132 ~ 22672683 (-) True G178450
TU243326 other upstream 2118534 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 2142342 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 2151658 27473355 ~ 27477978 (-) False ift46
TU243318 other upstream 2201437 27523134 ~ 27524109 (-) False LOC103038646
TU243357 other upstream 2202631 27524328 ~ 27525388 (-) True G179583

Expression Profile