RNA id: XM_007252468.3


Basic Information

Item Value
RNA id XM_007252468.3
length 3895
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC103044955
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25557064 ~ 25586563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTACTGAGtgacgggagagagagagaggcggagAAGGacggtgtgtgtgagtgtgtgagagagtttaACTTCACTGTAACATCCTACACACGCTCGAGCACTGCGTTTCTCACAGGAAGACCATCTCAGTCCGTGTGTGATCACCTGTCCTCTCATAGTCCTCTCTCCTGTTCAGCACAGCCATGGCTCCGACCTTGGCCACAGCCTTTGCCCGCCGCTGGTGGATGGCGGTGACAGCCATCATTGAGAACCTGCTGttctctgctgtgctgctgggCTGGGGCTCCCTGCTCATCATGCTCAAATCTGAGGGCTTTTACTCCTACCTCTGCACAGACCATGGTAACAGCTCCGCCTTCAACGTCTCCCTGCCGCCTGTGGCTTCATCAGCAGGAGGGGATGAAGATTACCAGTATGAAGACCAGTATCCGCAGGTGTCTCATGATGATGGAGTGGAAGTGGTTCCTCTGAAGTCGGTGGAACAGGTTATCCGTATGAACGGCTGGCTGATCTGTAAAGAACAGGATGAGATACTGAACTTGGCCTTCACCATCGGCTCCTGCTTCTTGAGCGCCATTGCGCTGCCCCTGGGAATCGTCATGGACAAATATGGCCCACGCAAACTCCGTCTGACTGGCAGTGCCTGTTTTGGCCTGTCGTGCCTGCTTATCGCCTATGGAGCCAGCAACCCCAATGAACTTTCTGTCCTCATCTTTGTTGCTTTGATCTTTAATGGCTTTGGAGGAATGTGTATGACCTTCACATCCCTTACgCTGCCTAACATGTTTGGAGACCTGCGCGCCACCTTCATTTCTCTCATGATCGGCTCCTACGCGTCTTCCGCCGTCACTTTCCCTGGAGTTAAGGTGATCTATGACTTGGGAGTGACCTTTATTGCCATCCTCGTCATCTGGGCTGCGTGCGCTGGCCTCGTTTTCCTCAACTGCTTCCTCAACTGGCCCTCGGAGGCCTTCCCTGGACCTGAGGACATGGACTACACAGTGAAGATCAAGTTCAGCTGGCTGGGCTTCGACCACAAGATCACCGGGAAACAGTTCTATCAGCAGGTGACGACAGTGGGTAAACGACTAAGCGCAGGCAACTCTCTCAAGCAGAAGGAGCTGGCCACCAGCGAGGGCCACAATCTCTGCCTCTCCACCATGGACCTGGAGGTGAAGTGCAAGGAAAAAGGAGAATCTCAGTCCTTCTCTCAGAGCATCTTCAGTCCTCTGTTCCTGCTCAGTCTGGTCACTATGTGCATAACTCAGCTGCGACTCATCTTCTACATGGGAGCGATGAACAGCATCTTGGAGTCCATGAGTGGCGGAGATCTTAatacagTGAGCCTGTACTCCTCTATTTTTGGTgtgatgcagctgctctgtCTGCTGACCACTCCAGTTATTGGTCAGATCATGGACTGGAAGCTGAAGGAATGTGATGATGGAGATTCAGATGAAAAAGATGCCATCAAAGACCAGCCCCAGCCCAAGcgaagagacagacagatccAGAAGATTACCAATGCTACACGAGCCTTCTTCCTCACCAACCTCATGCTTGTTGGATTTGGAATCACCTGCCTCATCCCAATCCTCGAGCTGCAGCTGCTCTCCTTTGTTCTGCACACCATGGTCCGAGGTTTCATCCACTCAGCTGTTGGAGGACTGTACGCTGCTGTatatCCATCAGGCCAGTTCGGGAGCCTGACAGGGATGCAGTCTCTGGTTAGTGCCCTCTTTGCCCTGCTCCAACAACCCCTCTTCATGGCCATGATGGGGCCACTGCAGGGAGATCCACTCTGGGTGGACGTGGGCCTGCTAGTCATGAGCATGCTGGGCTTCCTGCTGCCTCTCTATCTGCTGTGCTTCCGCAGAACCCTCCACAAGAGGAGGAAGCAGAAAGAAAACGACGCCAAGATCTACATCAAAATCAACGGCAGCGACAAACCCGAGGCTTTTGTGTAGATCCAGGCCACACGGATCCGGGAAGACAACAAAAGACACGAGAACGGATGAAAGAAACTGCCATTATTTAAAtgacttataaacacacacgatataacacacacatacaaagatGTTTGAGTTTTTTCCAATCTCTGAGAGACTCAACAGACTGATAACGTTGTCATGGAAACTGACAACTGCCATGCCATCAATGTGGACAGAAGAGAAgggcaaaaatggaaaaattaacAGAACCTCAAACCTCAgtttaaaataagaaagaagTAGAATTAGGGAATTAGTttgtgtagctgtgtgtgtgtgtctatttcCTGTGATATTTACAATTCACTGTTCCGAATGTGCCTGAGAAGCACGTATTTGCCTCCAGTGTTCAGCATGGTTGAGCTGCCTGGCTCTTTCTTTTTAGAGCCTTCTTACACAAATTTCTTCCCAGTTTATCTGAGACAATTAAAACACTCACCACTCActagaacccccccccccctcccccttatCATTTGCACTGGTTTCCCCAACACCAGGATTGTAAAGACAAGCGCATGCCTCCTTTGATTCATGTGAAGTCACCCGCTGTCTTcatctacccaccaagagagagcatggccagttgtgctctcttgggTTCCAGATGTGATGGGATGGGATCTCAGCCAATCAGTGCCTTTCTATTCCGTTACCTTTTAAAGTGCCGCAGCCCTGTGTAATGATGTGATGTCACCCAAACGGGTCGTGTTTTTAAACTTATTACCATCATTTTTAACTATGGTAAGAGTTTTGTATTTGCACACGTTTCTAAGCATGCAAACATTGCAGGCATTAAGCTAAGCTACATCAGTAGCTTACATCAGTGCCTTTAGTGCTGCTAGCCATATTaagcaataacaataataatggtATTTCAGCAACATTAGCCAAGAAGTAAAAGCTCCAACCAACCCGAAGCCAAGAGCCTTAAGCCTCATGTTTTAGGCACACAATTCGTGGCATTTGTCTCCCCCTAGgggtaaaagagagaaatacagaactGTGCATACAGCATATGGTCATGCAAAGATGCCATGATCACAAAGTCTCTGGAGTGTTCTTTATgtactgtttaaatatatatataaaataaatattattatggtgcacataatttattttaggtttattCATATGTTGAGTCTTGCATAAAGTCCTTCAATAGTAATGTCTTCATATGTGATCTTAAAATAACGAATAGTAACAttcaataattttaaaatgtttgcacAGTGACTGATATGCCGAAAGTCATGAGACTCGTTGACATGACCACACTGGCCAGTATGTAACCTCGCTAACCAGATACCACCTCACACGTTAAACAaatgtgggcattcccaagtcATTCCATGAggtaaaacttactgaacaatTTGTATACTGCTGTGCCATGACTTTTGTGTTGTGCACAGGTGTGTAAAGGTAGATTTGTTTATGTTCCTAACGCAGAGAAATGTACACGTTGCCCTAAAGGTGGCTTTACCTAAAGGTTGTGAAGTTTGTATCTCTTTGGCCCACATTTCATGGGAATTCCAGCACTTTTACAACACTGTTCCCGATCCTctgcttcgtttttttttttttaagaccgCATACTAAAGCCATTTTCTGTGCATATCACTCATGTCATCAAAGTGCCTTTGCCTTTTGTAAAACATAATGTTAAGGATTCCTGTGACTAATAGTTGGTTTAAaatatgttgtatttatttgtattgtttcttAATTTGGACAACATATCCTATATGTGAGGAATCACACTTTATATAACTGGCTGTTATTTGATAACCATTGGCTGGTTGGTTCTGCGTTCTAGGTATTGCAGTTTTGTTCTGGTAGGCATTATTACTACTGAGAAATGTgagaaaatatgaataaatgtgaTGTTCCTCA

Function

GO:

id name namespace
GO:0015807 L-amino acid transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015179 L-amino acid transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242595 lncRNA upstream 75873 25474053 ~ 25481191 (+) True G179034
TU242596 lncRNA upstream 80694 25459607 ~ 25476370 (+) False G179034
TU242589 lncRNA upstream 189728 25364307 ~ 25367336 (+) True G179028
TU242556 lncRNA upstream 239761 25273717 ~ 25317303 (+) False G179007
TU242555 lncRNA upstream 281403 25260514 ~ 25275661 (+) True G179007
TU242823 lncRNA downstream 185100 25771663 ~ 25771948 (+) True G179173
TU242827 lncRNA downstream 292080 25878643 ~ 25878855 (+) True G179177
TU242847 lncRNA downstream 378080 25964643 ~ 25968792 (+) False G179183
TU242842 lncRNA downstream 379200 25965763 ~ 25968792 (+) True G179183
TU242912 lncRNA downstream 814445 26401008 ~ 26401267 (+) True G179239
XM_022681318.1 mRNA upstream 6968 25526543 ~ 25550096 (+) True LOC103025709
XM_022681319.1 mRNA upstream 9386 25526543 ~ 25547678 (+) False LOC103025709
XM_007252463.3 mRNA upstream 198454 25339588 ~ 25358610 (+) True LOC103043838
XM_022681313.1 mRNA upstream 220468 25323348 ~ 25336596 (+) True proser1
XM_022681314.1 mRNA upstream 220468 25323348 ~ 25336596 (+) False proser1
XM_007252469.3 mRNA downstream 3260 25589823 ~ 25617224 (+) True LOC103045464
XM_007252475.2 mRNA downstream 38793 25625356 ~ 25643316 (+) False LOC103045760
XM_007252474.3 mRNA downstream 38794 25625357 ~ 25643316 (+) False LOC103045760
XM_007252470.2 mRNA downstream 41807 25628370 ~ 25643316 (+) True LOC103045760
XM_007252472.2 mRNA downstream 41808 25628371 ~ 25643316 (+) False LOC103045760
trnam-cau_40 other upstream 1055119 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 1102442 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 1849215 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 2592075 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 2847507 22689001 ~ 22709557 (+) True G178388
TU243054 other downstream 1327323 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 1937755 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 1937755 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 5552781 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 5846635 31433198 ~ 31433909 (+) True G180266

Expression Profile