RNA id: XM_015607076.2


Basic Information

Item Value
RNA id XM_015607076.2
length 2621
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC103047607
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22322720 ~ 22334543 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cTTTAGCGTCGCTCAGGCGTTAGCTGTAGCCTACACTTTATCTGTAGCTGTATGTAGACTAGACTAcactttactctttactctctccctctttctctctctctctctctttctctctcgtgaGTAATCCAGAAGTGCTCAGGGAACCATGGAAGGCGCGCGATGCTCAATGGGGGAGTGACCGTGTCCACCAAGGCTGACCAAAGCTGATGAGGaacactttttaaccagctTTCCAACTCCAGTACCAACTATCAGTCTACCAGTCTGTTTCTAAAACGTTCCTGACAGGTAACCAACATGGCTTTTGCACGCTTTATACGTCAGTATGTGGAACCGGTGGTGTTCTGCGCACAGGTGGCCAGCGCCTTCTTTGATACTGGTCTCCAGATGGTGGTGAAGCAGCGCAGCCAGAACTCTACAAGCAACAGCAGCACCACTGACCACCAAGATCACAGTCAGAACATCATCGCCAACTTCTACATGATCTTTAACATGCTGACCAAGTTCGTCCCCATCATTCCTGCACTAGTGTTGGCGCGAATCGGGGACAGGGGTTACCGGAAGGTCCCCATCGTAGTCCCTCTGGTGGGATACACCGTGTCCAGGGCATTGCTGCTGTTCGTGATCCTGCTTGATTGGCGAATAGAGGTGATGTACGCCGCCCCAGTGATTCATGGCCTTTGCGGAGGCTTCTCGTCCTACTGGGCCGGCGTCATGGCGCTTGTGTCGGTCACCACAAGCGAAGAAGACCGATCCCTCCGCATCATGCGCACAGAGCTGGTGTACGGCATGGCCGGCTTCCTGGGCAGCCTAGCCTCGGGTCACCTGTTCCAGCTGTACTCGGTGGACATAAAGCAGGGTGTGGTGCTTGCGAGCATGAGTGTGGTGCTCTATGTTTTCTGTCTCCTCTACGCCACCTTTGTCCTGAAGGTGAGCCGGCTCGCCCAAGACGGTCTACAAAGGCAGGACAGCACCGGCATCATCAGCAACCACTTCCAGCAGGACAAGATGATCATCGCCCTGCTCTTCCTCAGCGGGATCTTGTACGATGTGGCCGTTGGAGGCGGAGTGGAGATGCTGTCCATTTACGTCCTGAAGCCACCTCTGGCGTGGAGCGCCACGGAAGTGGGCTACGGGAATGCCGCTGGAAACGTCATCTTCATCACCAGCTTTCTGGGCGTGAAGCTCTTCACCAGGTTTTCTGTGAGCGACTCCAGCATGGTCATGATAGGCATGGTGTCATTCATGATCGGGATCTACTTCATGACCTTCGTCACCTCCACGGCCATGTACTTTTTAGccCGTTCTGTAATGTTGTTTGCGCTGATCCCAATGCCAACCATCCGCTCTCTACTGTCCAAGCAAGTCCGAGGAACATCATATGGAATGACTTTCACATGCCTCCAGCTCTCCTTCAGACTGGCCAGTTTAGCTACAACACCCATCTACACCAAAATCTACGAGTCCACGCTGGACACCTTCCCTGGATTCGTCTTCATCTTATCCAGCTGCATCACCTTCCTCTCTGTTATACCCATCAGtgttgtaggctggtGCACTGTGAAGCGGGATAACTATGAGATAATCCAAGGGAACTGAAGCAGGCGGATCTTCACCTGATTGAGAGACTATAAGAAAGAACGCGAGAGTACTGTGTTCTGTCTCCTgctgtgaaagaaaaaaaaaacatttattaattttaaacagatGCAGCTCACAATTTTTACTGTAACCATAACATAGTGTTActgtattacattttacattagaCTGGTAATGTTTATTTGTGAGACATTTGGTTTGTCTCagctgtttatttgtgtattgcgcattgttacattattgttattatagtgTTACAGTGTACATGATACATGATATAGTGTATATGATTTTGTATGAGAATTTTACTGTGATGTTATAGcagaaaatgttgtttttttgagtTTATTAGGAGACCGATcatttactattttaaaatgtaacatttttgttattattactgctattattattgatgtatgtaatgttcttttttatgttaatacGTGTGTCAATTCTGATGTAAAACTTTACACTGAAGTGCTGGCACTGAGAGGCGATATGAGAAGAATATGATGGATTGAAATATTCTTTATGCATTTAAGTTGTAAGCAAGGATGCTactgaatatactgtactatcaAAAGGCATTAACACATCATTTATTAACCCATAGAaccctttatttaatatttagttatGAATCCTTATGCAGAAACAACTCTGAACAAGGATATCTTGTGAAGGAATCTCACAGGGTTACATTTTTGGGGGAATATTAAACTGATGATAATTACCAAAGCAGTGTGAGCGTCAGTATTTCAAACGCACTGATTAAAAGGGCTCAGATTTCagattaaaacactgaaacgcacagttggccatgctctctctctggggggGTTAGATGGTGCTCTCTACCCTCTTCACTCCTAGTTTAATGTTGGTCAGCACTGGCATCTGTTAGCTGCTTTATTAGAGTTGGGGATCTGGCGCTTTCTTCTGAGTGCACTGGCTGCTTACTAATGCTGCATTGAATGTAgtagttggaaaagaggcggggctgatttcacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241522 lncRNA upstream 8547 22313170 ~ 22314294 (+) True G178289
TU241504 lncRNA upstream 219795 22102749 ~ 22103046 (+) True G178282
TU241502 lncRNA upstream 221558 22100040 ~ 22101283 (+) True G178280
TU241500 lncRNA upstream 223283 22099319 ~ 22099558 (+) True G178278
TU241476 lncRNA upstream 349807 21972714 ~ 21973034 (+) True G178254
TU241555 lncRNA downstream 5436 22339979 ~ 22385723 (+) False G178310
TU241549 lncRNA downstream 14435 22348978 ~ 22385553 (+) False G178310
XR_002651466.1 lncRNA downstream 46067 22380610 ~ 22381578 (+) True LOC111195069
TU241567 lncRNA downstream 46093 22380636 ~ 22381462 (+) False LOC111195069
TU241551 lncRNA downstream 50627 22385170 ~ 22386661 (+) True G178310
XM_022681248.1 mRNA upstream 7534 22127121 ~ 22315307 (+) True LOC103046694
XM_015607071.2 mRNA upstream 358133 21932331 ~ 21964708 (+) True grin3a
XM_022681243.1 mRNA upstream 953567 21336677 ~ 21369274 (+) False musk
XM_007241062.3 mRNA downstream 86819 22421362 ~ 22453611 (+) True sec31a
XM_022680720.1 mRNA downstream 121776 22456319 ~ 22465729 (+) True LOC103025565
XM_007241060.3 mRNA downstream 133894 22468437 ~ 22476305 (+) True tmem150c
XM_007241055.3 mRNA downstream 152280 22486823 ~ 22491503 (+) True hnrnpdl
XM_007241057.3 mRNA downstream 152280 22486823 ~ 22491503 (+) False hnrnpdl
TU241506 other upstream 21776 22249144 ~ 22301065 (+) False LOC103046694
TU241070 other upstream 2183277 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 2228979 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 2547050 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 2600452 19720301 ~ 19722389 (+) False LOC111194983
TU241591 other downstream 125849 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 125849 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 127448 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 152280 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651462.1 other downstream 152280 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile