RNA id: XM_007254938.2


Basic Information

Item Value
RNA id XM_007254938.2
length 1487
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC103045166
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18181740 ~ 18212818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagagagagagagagagagagagagagagaagatggcaggaggtgtggagctggtGGATCTGTAGGATTTCCCTCCAGAACCGCGTGGAACCGTGTGGATCTGAGTGGAACCGGGTCTGACTGGAGCTGTCCGGCCTCCAGCAGCAGAGAGGGTATTATAGAGGACAGCGGTCATGCAGAAGGCAGGGACGGCTCCGTCCTCACGGGGTCCCAGCGCTCCCGGATCTCCAGCTACTTCTATTGTGGCCAGGATGGATAATCAGGTGATTGGTTATAAAGATTTGGCAGCTATTCCTAGAGATAAAGCCATTCTGGAGGTGGAGCGTCCTGACCTGATGGTGTACGAACCTCACTTCAACATCTCCGCTCTGGACCGAACCGGCCTTTCCCGCAGCAGAGAGaGGTCCATGTCTCCTCACTCCATCTCACCCCCTCCGTCCCCTGAGATTTTTGCCTCCAGAGAGCAGAAGGCGTGGTCTGAACAGGGTTCACCCGGCGGATCCACCATGGGCTCTACAGTTCAGCTCCGCAAAATCAGCGCCACCAAAGGACCCCTGCAGCACTTCCACAGGCCAGataatgGAAGCAACATCTACAACAAGCCTCCCATCTATAAGCACGCTCCCCAGGAGGCACCTGCACCATCccataataaacacaaagagGAGGTCATCATCATATCCTCCAAATTCCCAGCTGCCCAACCCCCTGACCCCACCCAGCCATCGAAGATCGAGACCGAATACTGGCCCTGCCCACCTTCTCTGGCTAGCGTGGagattgAATGGAGGAGGAAGGCGGAGGAGGAGGGCAGGGCTGTGGAGGATGATGAGTTTGAGGACCTGACTGAAGACGCCAAGAGACTGCAGGAACAGGAGCTAAATAAGATCCAGTCGAACTTGGGTAAACTGATCCTAAAGGAGGAAATAGAGAAATCTGTTCACATCCGGAGGAAAACTCGCTCCCTACCCGACAGGACACACATGCACTTAGGTTCCAGTGGAGCATCTAAATCTGCCTCGTTACCTCCCTGCAGTCGCTCAGGACTCACCCGGCTGCAGTCAGCTGACTTCACCTCCACAGACGGCGACAAACCCAGAACAGGCCTGCAGatttaTCCTTATGAAATGCTGATCGTGAACCACAGAGGGCGATGTAAGCTTCCTCCCGGAGTGGACAGGACCAGACTGGAGAGGCATCTCTCTCCTGAAGATTTCGAGACTCTATTCGGAATGCCGATCTCAGAGTTTGATCGTCTGTCGCTGTGGAAAAGAAACgaactgaagaagaaagtctCGCTTTTCTAACACCTGCATCATCTTCAGCACGGACTCTCATTATTACCTGCCCGGGAGACACAGCAGACCCAACTCGGACCGATTCGGGATGATCAGACATCACCATTATCTCCAATAATCAGCTTTGATCTCTGACTTGTATCAGACAGCTTGCGTACGTCTCTGTGTACTGTTTAGGATAAAA

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240022 lncRNA upstream 10291 18175476 ~ 18176766 (+) True G177215
TU240017 lncRNA upstream 12539 18170425 ~ 18174518 (+) False xpo7
TU240005 lncRNA upstream 81944 18103086 ~ 18105113 (+) True G177203
TU240002 lncRNA upstream 88870 18097911 ~ 18098187 (+) True G177201
TU239999 lncRNA upstream 106337 18080009 ~ 18080720 (+) True G177198
TU240025 lncRNA downstream 36610 18249428 ~ 18258855 (+) True G177216
TU240054 lncRNA downstream 95074 18307892 ~ 18309648 (+) True G177240
TU240077 lncRNA downstream 192195 18405013 ~ 18464234 (+) True G177257
TU240089 lncRNA downstream 246240 18459058 ~ 18466032 (+) True LOC111195058
XR_002651449.1 lncRNA downstream 249053 18461871 ~ 18466201 (+) False LOC111195058
XM_007254931.3 mRNA upstream 15322 18138712 ~ 18171735 (+) True xpo7
XM_007254932.3 mRNA upstream 15322 18138712 ~ 18171735 (+) False xpo7
XM_007254933.3 mRNA upstream 15322 18138712 ~ 18171735 (+) False xpo7
XM_007254934.3 mRNA upstream 15322 18138712 ~ 18171735 (+) False xpo7
XM_022680712.1 mRNA upstream 484941 17647967 ~ 17702116 (+) True itga1
XM_022680714.1 mRNA downstream 23479 18236297 ~ 18252700 (+) True LOC103044456
XM_007254945.3 mRNA downstream 112055 18324873 ~ 18330489 (+) True LOC103047412
XM_007254947.3 mRNA downstream 118863 18331681 ~ 18337181 (+) False LOC103021446
XM_015607275.2 mRNA downstream 119081 18331899 ~ 18337181 (+) True LOC103021446
XM_007254946.3 mRNA downstream 126043 18338861 ~ 18347330 (+) True LOC103047729
TU239536 other upstream 1140068 17042835 ~ 17046989 (+) True G176882
TU239485 other upstream 1362740 16820959 ~ 16824317 (+) False fam136a
trnal-uag_3 other upstream 3259648 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651440.1 other upstream 4318202 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 4501494 13679359 ~ 13685563 (+) True G175900
TU240029 other downstream 11455 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 11455 18224273 ~ 18226133 (+) True G177219
XR_002651448.1 other downstream 112055 18324873 ~ 18330489 (+) False LOC103047412
TU240134 other downstream 327080 18539898 ~ 18543997 (+) False LOC103024155
TU240867 other downstream 1507483 19720301 ~ 19722389 (+) False LOC111194983

Expression Profile