RNA id: XM_007254943.3


Basic Information

Item Value
RNA id XM_007254943.3
length 2455
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC103046908
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18307853 ~ 18317562 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctcagcagagGGAGGTTCAGTCACTCATAGCTGGAATCTCGAGCCGGACGCCTCTGCAGCTCCAGCGCGTGCCATGCAGGTCCCGTGCCCCCTGCGGCTGGTGCTAGCCATGCTGGTGCCCGCCCTCGCCATGCCCGACTACGACTACGGCTGGAAGGACCTGGGACCGACCTACGGGAGGAGCCCGCAGTGCGTGGACATCCCGGAGGACCTGCGGCTCTGCTACACGGTGGGCTACCACCGCATGCTGCTGCCCAACCTGCTGGACCACGAGACCATGGCGGAGGTGAAGCAGCAGGCGGGCAGCTGGGTGCCCCTCGTGCACAAGCAGTGCCACCCGAGCACTCAGGTGCTGCTGTGCTCGCTGTTCGCCCCCGTGTGCCTGGACAGGGCCGTGTACCCGTGCCGCtggctgtgccaggctgtgcgGGACAGCTGCGTGCCCATCATGGAGGCGTTCGGCTTCCCCTGGCCGGAGATGCTGAACTGCAGCAGGTTTCCTGAGGGCGACGTCTGCATCTCCACCAATGCCACGGACACGCCGCCCGGCACGCCAGGTCATGTCAGTATATGCCCACCGTGTGTAGATGAGGAGAATGCAGACAGTATTCTGGAGCACCTGTGTGCCAGCGAGTTTGCCATTAAATCCAAaataaagaagataaaaaaagataagaacGATAAGAAGCTGATCCTGCAGAGAAGGAAAAAAGCAGTGAAGCTGGGGACCCTGAAGAAAGAGGAGCTGAAGAAGATAACGGAGTTGTATCTGAAGAACGGAGAAAACTGTGACTGTAAACAGCTGGAGAACTCTGGGAGCCAGTATCTCTTCATGGGCCGTACAGCCGGGGGGCGCTACCTGCTGACCGGCATCCACAAATGGGATAAATCTAACCCAGAGTTTAAAGAGACGATGAAGAGGATGAAGAACTTCAAATGCCCTCAGTATGAATCAGTGTTTAAATGACTGACCCTCCACAGCGATCAGCCTTAGAgaccctgttcacacctggcatCATCATCATGCGTTCTGGGTGATCTATCTGATCAGTATAAagtgtgaacaggtgtgaacGGGATCCATACATAATAACCACGATACCACACCGTCCACCATCCAGATGGGTTAGCTGGTGGCTGGGGCACAAACTAAACTAGCTGCTCATCTGGATTTGGGTTGATGACTCCGCCCACAACTTGTAGACTCTTACTGTAACTAGACCCACCTCGGAAATGTGTGTTTAGCAATCACTTGTGATCAGATCACCCAGGACGCATGCTATTACCAAGTGTGAACAGagtctaatataaatataaactatacTATTTTCTCAGCATTATACTGTATAACCTTGTGTTGTAGTAACGTTTGTGCTGAAACTCTGGGACAGCCAGGAGGAGTCACCTGCACTCCACCTGCACACCTGGGATATAAACCAGCGTAGACAAGAAGTGAACCAAGATGGCCTTCACATAACAAATTTCTCAAAATACACTCACTTTATACACTCACTGACAAACATAATAATGCACCAATTAGTTAATAGGAACAATTGAAATGAAGCTCTAGTTTAGACTCTGTTGGTTCCTGTatcctggatataagatgagattgagacggTTGGATAAAGAATCCCTGctgagtcccagctgctccataaatgctggattggtgaaaAATCTGGAGACCAGGCAGGACTgtatgtgggtgagcattatcctgctgaaagaaAATGCTATCAGTTGGAAGTTCTGCCATGAGAAGCAGCAACACATgtatctgcaggatgttctgcacatatcACTCAGCTGTTAATTTTCCTCGTATCACTACGAGGGGTGACCAACTGTTGTATGAGATGCTCCTCAGATTATTCATAACACCAGTAGTTTATTGAAGCAGTGTGTCGCTTAAATACTCAGATTCCAAACAGAACCTTGATTTATCACTTAATACAATAAAGTTGTAGTCCATAGCAGTCCAGGTTTCTCAGGTGATGGTGTTCAATTTATTGGAACAACCACCCTGCTGTCTGTCTTCAAACGTAtcatagaggcatgtctagcagtcaacagtctctcaccaggaggtacactacccaacagTATCCTGTGAAAGGCTTTTTATAGGTCAAAAGGGAAGGCAATTAACCCCTTTTGTGGTAAGACACAGTGAGTAGGGAGACAACAGCtgtaatcatttatatatatatatatatatatatatatattatatatatatatatattatatatatattatatatatatatatatattatatatatatatctgagaCAGAAATCTGGGGTGCGTTATGGTTTTTTTGTTTCGGTTAGTGagtgtaaaatgtacagtacaatCCAACATAACACTATtacactgtttttgtttttacttttgaagaaaaaaaaatcaccataacaattaaaaacagtcataaacCCACA

Function

GO:      GO:0044699

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240488 lncRNA downstream 40346 18262603 ~ 18267507 (-) True G177545
TU240487 lncRNA downstream 55172 18250725 ~ 18252681 (-) True G177544
TU240470 lncRNA downstream 90686 18212529 ~ 18217167 (-) True G177533
TU240471 lncRNA downstream 90686 18212529 ~ 18217167 (-) False G177533
TU240001 lncRNA downstream 213128 18094518 ~ 18094725 (-) True G177200
TU240499 lncRNA upstream 7193 18324755 ~ 18328179 (-) True G177551
TU240503 lncRNA upstream 20982 18338544 ~ 18338832 (-) True G177555
TU240507 lncRNA upstream 30736 18348298 ~ 18348654 (-) True G177559
TU240523 lncRNA upstream 186836 18504398 ~ 18531635 (-) False nsd3
TU240538 lncRNA upstream 217323 18534885 ~ 18537687 (-) True G177584
XM_007254941.3 mRNA downstream 5811 18257392 ~ 18302042 (-) False LOC103046193
XM_007254940.3 mRNA downstream 5811 18257392 ~ 18302042 (-) True LOC103046193
XM_007254942.3 mRNA downstream 5813 18257392 ~ 18302040 (-) False LOC103046193
XM_015607273.2 mRNA downstream 81676 18224236 ~ 18226177 (-) True LOC103045884
XM_007254935.3 mRNA downstream 126774 18175471 ~ 18181079 (-) True pbdc1
XM_022681166.1 mRNA upstream 32343 18349905 ~ 18388403 (-) True LOC103021760
XM_022681172.1 mRNA upstream 87441 18405003 ~ 18449203 (-) False tacc1
XM_022681171.1 mRNA upstream 87441 18405003 ~ 18435807 (-) True tacc1
XM_007254951.3 mRNA upstream 87441 18405003 ~ 18435805 (-) False tacc1
XM_022681167.1 mRNA upstream 141442 18459004 ~ 18482114 (-) True LOC103023096
TU240457 other downstream 133328 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 2517209 15780555 ~ 15790644 (-) False stoml2
TU238972 other downstream 2742390 15529393 ~ 15565463 (-) False LOC111194989
TU240520 other upstream 80020 18397582 ~ 18403008 (-) True G177568
TU240722 other upstream 773584 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 802224 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2973960 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 3615957 21933519 ~ 21933831 (-) True G178267

Expression Profile