RNA id: XM_007254946.3


Basic Information

Item Value
RNA id XM_007254946.3
length 2642
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC103047729
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18338861 ~ 18347330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtataatgtgtgtgaaaGCTATAAATGGGATATATTGTAGTAAATAATTGTAGTAATAAGACTGGAAGCTGTAGAATGTGAAGATCTGGAGCTGCATGAGGATTAGTAAAGgcCTTTGATCAGTGTAAATCTGCAGAAGGAGATCAGGATGGCTTCTGCCAGCAACACTGATTTTAAGTTGTACCGGCCGTCGGGTGGAGATGTTCAGTCCAGCTCGGTGGTCATCCTCCCCTGTTACCTGCATCCTGAGCGCAGCGCGGTGGAGATGACGGTCAGGTGGTTCAGGGGGACGGAGTGTATCTGCCTGTATAAAGATGGGAGGATGACTGTGGGGCGGGGCTACGAGGGGCGGATCAGTCTGTTTTCTCAGGAGCTGGAGAAAGGAAATGTCTCACTGATAATCAGAGACTACAGCTGGACAAGTGATGATTACCTGTGTCAGGTGTCCAACAAAGAAACTACAGCAGAGTTTACTGTGGGACTGGatGATCCCACAGAGGGTTTGGGTGCTTACATTTTGCAAGACAGGGACAGGAAATGGACAGaagatgaaagaaaaaagatggaGGAATCTGCTTTGATCATTGaattaTCAGCAGATGCCACACAGTCACTTGAGATGAAGAACAAGAAGCTGGAAAAGGAGAAGACACTAATTATGGAGGAAAAGAGCAGACTACAGCAAGAGCTCGGAGAGActcagcagcagcttcaggagAAAGATACTGCAGTGAAGAACATGGAGACAGAGCTGGAACACAGTAAAAAGCAGCTGGAGAGAATTGAAGAGGAACTGAAGAAAAAGAACAGGAAACTACAGGAGATGGAGTGTATGTTGCCTCCGGCTGTACCTCAGTCAGGATCAGTGGAGCTGGATCCTCAAGATGTAATTCCAGCAAGACCACGCAGGAGACACAGTAAAGAAGGGATTCCTCCAAGAATGAGAGAAGCCCTGTTGGAGCTCCGGCTGGTTCTGTTGGGTCGGACCGAGCACGGTGAAGACATGAAGAGCTCCATAGGAGCCGCCATCTTTGGCGAAAAGAGGAGGAGCCAGGCTAGAGAGCCTATAGTGAGGGAGCAGAGTGATGTGAGGCGGGGAGTGGTGTCTGGGAGGCAGGTAACCGTGGTGGACACTCTTGATTGGTTCTCTCCTGGACTGTCTCAGGAGGCGCTGAGGAACGACGTAGGAGTCTGCATCAATCTGTCCTCACCAGGACCTCACGCCTTCCTGCTGGTCGTACCGGTGAGGCAGGTGGAGGATGAGTCTACTGGAGAGGAGGTGGGGATGCTGGAGAGGATGGGGGAGATATTCGGGGAGAGGTGCTGGAGGAACACTATGGTTGTCGTGGTGACGGAGGAAGATCAGGTGGAGGATGTTGACGAGTTTGTTCGGTCAGGAAACGAGGAGGTTCGGAGACTTGTGGAGAAATGTGAGGAAAGGTATCACTGTCTCCACTTGGGCGACGGAGGTGTGGACGAGTCGGAGATCTGTGAGCTTCTAAAGAAGGTGGAGGAGATGGTGGGTGGACACAGAGACAAGTTCTACAGCAGCGAGGTCTATCTGGAGGCGGAGGCTCACATCCGAGAGATCGAGGAAAGAGTGGTAAGAGAGCGAGAGGAGATACGAGAGAAGCAGGAGAGAGAAGCTGAGGAGAAACGGCAGAGGAACGTCCGCAAGTCCGAAGTCCAGTTCCGAGAGTCTACGGCTCAGTTTCGGGAGCAGATAAATCAGCACGAAGTCCGAATTACGACTCTGGAAACAATGGTGAAGGAGGAGCGGGATGAAAAACGGAAGTTAGAGCTGGAGAACCATTTGGAGCGAGAGGTTCAGCAGAGAAACAAGCTTCAGTTGGAGCTTCAGAGACTGAAAGAACAGACTGAGAGGGACCGGAGGGCGATGGAGGAGAGACACCAACAGGAGATAGAGGAGATTAGGGAGGTGTATGAAGGAGAAGCCCAGATGAAGGCGGAGCGAATACTCAGAAAGAATATCCTGCCTGAACTCAAGCTGAGGACACTGGAACTCGtggcagagaagcagaaagatcTGGACATTCGATTGAAGGAGAAGGACAGGGAGTTGGAGCGACTGAGAATAAGACTCCAGGAGATGACACCAGCTCAAAGAGATGAGCCTCAGATTGACACTCAACAGCCAGGACTATTTAGCTGTTTTTGGAAAATACTCAGTGATCCAGTACTAAACACTCAATCagatcagtaatcagatttaatCAATAAGTCAGTTTACATTTACTGCGCTTCATATAGAGTCAAACACACCTGTAGGAGCATACTAGTCCTGTAGGGGGCGATAGGTCCTCATTAAGTGAGACACACcgtaaagaatgaaaaaaaaaaaggtcaaatccCAAATTACTCCCTAAACCCTACTCCCTAAGTAGTGAAAGACTCAAATACAGTTCTCTTACAAGCTTATGCTAATGTTTCTTTTCTATGTGTGAATGGAAATAATTTAAAGAACGGAGGAAGAAATCAGTTTTATGAAATCTGATCGTCTGTATGTAGAAGCTGAAGTATTATGACTTATTTAGGTCAATATAAAGGGAGTAAGAtcttagtagtttttttttttggtgaagatgttttataaagtttagacgtgtgtgtttaaaatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240054 lncRNA upstream 29213 18307892 ~ 18309648 (+) True G177240
TU240025 lncRNA upstream 80006 18249428 ~ 18258855 (+) True G177216
TU240022 lncRNA upstream 162095 18175476 ~ 18176766 (+) True G177215
TU240017 lncRNA upstream 164343 18170425 ~ 18174518 (+) False xpo7
TU240005 lncRNA upstream 233748 18103086 ~ 18105113 (+) True G177203
TU240077 lncRNA downstream 57683 18405013 ~ 18464234 (+) True G177257
TU240089 lncRNA downstream 111728 18459058 ~ 18466032 (+) True LOC111195058
XR_002651449.1 lncRNA downstream 114541 18461871 ~ 18466201 (+) False LOC111195058
TU240103 lncRNA downstream 122606 18469936 ~ 18472897 (+) True G177274
TU240116 lncRNA downstream 133174 18480504 ~ 18482101 (+) True G177283
XM_007254947.3 mRNA upstream 1680 18331681 ~ 18337181 (+) False LOC103021446
XM_015607275.2 mRNA upstream 1680 18331899 ~ 18337181 (+) True LOC103021446
XM_007254945.3 mRNA upstream 8372 18324873 ~ 18330489 (+) True LOC103047412
XM_022680714.1 mRNA upstream 86161 18236297 ~ 18252700 (+) True LOC103044456
XM_007254937.3 mRNA upstream 126043 18181740 ~ 18212818 (+) True LOC103045166
XM_007254956.3 mRNA downstream 177535 18524865 ~ 18537048 (+) True letm2
XM_022680716.1 mRNA downstream 192784 18540114 ~ 18558444 (+) True LOC103024155
XM_022681174.1 mRNA downstream 213009 18560339 ~ 18563776 (+) False LOC103044763
XM_022681173.1 mRNA downstream 213010 18560340 ~ 18563776 (+) True LOC103044763
XM_007254966.3 mRNA downstream 291588 18638918 ~ 18645170 (+) True LOC103027413
XR_002651448.1 other upstream 8372 18324873 ~ 18330489 (+) False LOC103047412
TU240029 other upstream 112728 18224273 ~ 18226133 (+) False G177219
TU240030 other upstream 112728 18224273 ~ 18226133 (+) True G177219
TU239536 other upstream 1291872 17042835 ~ 17046989 (+) True G176882
TU239485 other upstream 1514544 16820959 ~ 16824317 (+) False fam136a
TU240134 other downstream 192568 18539898 ~ 18543997 (+) False LOC103024155
TU240867 other downstream 1372971 19720301 ~ 19722389 (+) False LOC111194983
XR_002651455.1 other downstream 1403612 19750942 ~ 19775791 (+) False LOC103042206
TU241050 other downstream 1741931 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 1791492 20138822 ~ 20139564 (+) True G177950

Expression Profile