RNA id: XM_022681172.1


Basic Information

Item Value
RNA id XM_022681172.1
length 4877
RNA type mRNA
GC content 0.44
exon number 14
gene id tacc1
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18405003 ~ 18449203 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCTGtgtcactgctgctgctccaccGGACTCACACAGCTACTCAACACTCAACATGAACCGGACCTgatcacacacttacacaaactcacactcacacacacacacacactcgccacGGCACTATCATGGGGGGATCTTTTTCCCAAAACAAGAAAACCGACGGGGTCGTGACCTCTCTGAGGCAGAAGAGCACCAGTCTctcgGACTCAGAGGGTCAGTTTGAGACGCCCGAAACGGAGACGCCTGTCCACCACGCACTCACCGACCCAGCAGCACTGGCTCCGCCCACTGGAGAGCCTGCAGgTATAGATCTGGACGACGATGATCAGGAGATTCCCGTTACCAAGGAAACCGAGCAGATCTCCATCCTGTCTGAACCGGACCCCCAGCATTACAGCCCGATCCCAAAGCCTGAAGACCCCCAACCTCTGCCCTCCATCATGACCGTAGAGACAGCAGAAGATCCAACCCACACTCTTTCTTCTCAGCCTGTCTGTAACGGCCACCTTCCAGAACGTTCCCAGACCTCGGTTCCCAAAGCACGACCTCCGTCTCTAAAGATGAAGTCTCCTCTGAATGCCGTCGACCCCAACGAGGTGGACGACGAGCCTCCACCGCTGCCGAAGGGCAGCTACAGTTTTGACCCGAATCAGTGCGATTTGAACTCCAATCCGTTTGCTAGCGGCAGCTCCAAAATGCAGAATTCCCCGGTGCTTCCGAAGGGCACTTACAATTTTGACCCGGACAACTTTGACTCCTTGGAGTCCTTGGATCCTTTTAAGTCTTCGTCAAAAGGTTTGGCTTTGAGCAGTGACTCGGCTAAAGCAGAAACTGATCCCCTCCCTGCATCTTCCAGCATCCCAAAAGCACAGCTTCCAGACCCTGAATCCAATTCCCAGTCGGAAGCCGGGGAGGAAAACCTAGGATCCAAGAGAATTCTGCAACAGAAACAAGGGAAAAGGCCAGGAACTAAAGTTACCCCCAAGAAACAGAGAGCTAAAGCTTTAACGGATAAGTCAGAAGTATCAGAGCAGCCCTCCCACCCAGAGTGCGACTCGTCCGCTCCTCTGAACGTGGACGATATTCCCATTTCCAAAAAATCTTACAAATTCGACCCCAACCAGTGGGACGACCCCAATTTTAACCCGTTTGGTGGAACTAGCAAAATGAGCAACTCCCCGACCCTTTCCAAAGGGGCGTACACTTTTGATCCGGACAACTTTGATGACTCTGTGGATCCTTTCAAACCGAGTAAAGCTTTCGGACCTAGCAATGACTCTACAAAAGCAGAAACAGAGATCAGTGTGGATATACtcgataaacaaacaaaccaagagCGCCCTCTAGTGGAGGAGAGGAAGGCACGCCAGTCGCCCAAGAAGAACAAGGACAGAATCATCACGACCACTGAGCAAGTTCGGTTTCTCTGCTTGCTCCTGAACACCTGTAAAGTGAAGAAGTATGAGAACAAGTCATTAGTGCAGGACGTCTGCAGCCAGggtgAGGAGGTGCAGGAGGAGCCGGTGAGTCCTCTGGAGCTGCCGGTACAGCACGCCACAGATGAGGAGAAGTTAGCATCCACAGGGATGGTGCAGAAAGAGCCGAACGAGAAGAACACAGACGATCTACCAGTGGgggaaactgatcattttagtGAAAAGGAAATATGCACTCCTaCAGAGGGCCTGTGTAAGTCCcaggctctgattggctgtgagAAGATGGAGAAGGTTTCTCCAAGTCTGGACTCTATCCCCCTCAGTGAGATGGACAAAGCAGCTGTACTGACCCTTATCAGAGAGGAGATCATCTCTAAAGAGATTGAGGCCAACGAGTGGAAGAGGAAGTACGAAGACAGCAGGATGGAGTTAACAGAAATGAGGAAAATCGTGGCTGAATATGAGAAGACTGTAGCACAGATGATCGAAGATGAGCAGAGGAAGACTATGGGCTCCCAGAAGAGTGTCCAGCAGCTGACCCTGGAGAGAGATCAGGCCCTGGCTGACCTCAACTCAGTGGAGCGGTCACTGTCCGACCTCTTCAGGCGCTATGAGAACATGAAGACCGTGCTGGAGGGATTTAAGAAGAATGAGGAGGTGTTGAAGAAGTGTGCCCAGGAGTATCTGGCACGGGTTAAACAGGAGGAGCAGCGATATCATACCCTCAAACTGCATGCAGAGGAGAAACTTGACAAGGCGAATGAGGAGATCGCTCAGGTGCGTTCAAGGGCGAATGCGGAGAGTGTGGCTCTGAACGCAAGTCTGAGGAAAGAGCAGATGAAGGTGGAGTCTCTGGAGAGAGCACTCGAACAGAAGaaTCAGGAGATGGAGGAGCTGACAAAGATTTGTGACGAACTCATAGCAAAATTGGGCACAACAGACTGAAACCCAACAAGAAAAACTCTTCAAGCCCCACCCCCAGCTGCTCAAACTGTGCTTTAATCCAGATGACACGCCCCAAACCTTCCCACAACAAACACCCTTAGAAAAATGCAGTTTTCGTTTTGGGGAAAAATGATCTGTACACTGATACATACAAATTATTATATTCCTTGCTCTATTCCAGCTTTGCTAATGCCGTTAATCCTAAAGGGGGCGCTATCAAACTCACTCCTTGTATTGTAATAGCAAAATCGCCCGACTCCAACAGCTCAAACTGCACTTTAATCCAGCTGACACGCCCCCAAACCTGCCCACAAGACACACCCCAAAACCTACCCACAAAAACATATCCTCAAACCTGCCCACAAGACACAAGAAAAAGGATGTTCCATTTTGGGAGAAATTATCCATACACTCCTTTTTCCATCCCTCTAGTCCAGTTTTGCTCATGCTGCTGCTGATCCTGAAGGGGGTGCCATCACACTCACtccttttactgtaaataagagacttgttttttgttgtatcGTTGTTTTAGACGTTGTTTTGGACGTTATTTTACAGGTTCTGTTGTGGGTCGTACTGTAACCCCGTCATGGTAGACCACAATAAATGAGTGGGAacaaaagtgtgttttcagtgtttacaCACTTTGGGATTTGAGTTACAGTGGTTGTGTTTATCGTTAATAGTCACGGTCTGATTTTAATCATCAAAATGTGTGAAGTTATGAATTGTTACGTTGAGTGAGATGATGTAAAGCAACAGGGAGATCAAATAGAACCAACTGAAATACTGTATTATGAACAGATCTTTTTACACAGGTGGAAAAGCTCAATGTGGGAAGCTAAATGCTAGTGTAAACAGCAGCTACAACAACAATGCTCCATGCTAACTTTTAAAGCACTTAAGATCACACTGTTAGTAGCTGGCAAATGCGCTTTAGGTtgttttaaacctgtttttactttacagtacaatacagtttGGCAGGAAcgattttgcacatttttagcatttagcccaAATGTATCGGACAAGCTAAGCCATGTTAGCCCAGGTTACATGCTAGTTTTGGGGCTTACACAGGTGGAAGTTCCAGGTGGGAATGGGATCTTATTGGTTTGTAATTGTGTTGTAACTAGAATTCAGTTATTTCCTTAGATTTACACTGAAGCTACCACACTAATGTAGTATTTATTGTAGAATAACATCCTAGAATAAACTCtgtaaattaaatacagtaagaTTTTCTCCACTAGAATGTCTTAAGCcgcattaaaaaacataaaccagTACAACAGAATAGGTATTCAAATATCTACATATCtacatttgtaaatgttgtGGCAATAcgcttattttttaaaaaattataatttactttaaatcagCATTAAACTGGTAGAATTCTGTCAGAAAAGACATTTAATACATGACGACAAGCAAGAAAATCAGCTCAAACGAGCACAGTATGCTAAAGTACACCTTGTTACAatcaatatatacattaaaacacatttgaaTGTACAGGCTCATTTGAGTCTGTATGGAATAGCAATAATGgaaccacaaaaaaataatacttacaagtaaaaataacaataaaacatgagTTTTGTCATAAAATGAAGCTTATCtccttttaaaaatgtgattttaataaCTGCGCCTAACAATTGTGGTAAAATAAGGTGCAGATATGCTAGCTAAGTGCTAACTGAAAACTTATGGACTAATTGGTTAGTTACCACCATGATGCTAACTAAATGTCTTAAGTCATCACACAATCTTCACAAAGTTTGAGTAATATTATCTAGTCTACAGTGGATACTATAATTATGAGGCTTCTGACAGAATATATCTGTTATTAAACTATATAAATAAGCAAAAGTTCTGTAGCATGGCTAAAAACATCCAGCTAGCTGTTAGCTggtgttagctacattagcctggTAGCTTCAgtttcaggaaaaaaacaaacggAGGTAAAAACATGTCTTTGCTGATCAGTTACTTTTGGGATAAGGAGATAAAAAGTGTGTATATttgatattattgtcatttgtGCCATTTCTGAGTTACTTTTCCtgctaaactgagttttatctCTCAGACAAAGCCTTGAAGTTTACTGCCTTTATTTCACACAGTGTTAATTCTGAAatcatgctaaatgctaaacgACAATCTGCGCTGCTGAATTAGCTCTGTGCCTGTTTGCCAAAGTGACCAAGCTGATCCAGCGTCTGTTAGGATATATCGCCCATTCTGTATACGCAGCGGTCCGAACCGCGGAAACTGCCCTGCCGCAGTCAGTGGTAAAGGTGTGTGACGGTCCAGTGTGTATTTTTATGAGAGTGATATTTCTCTGTTATTTTCCTCTCATTGATGTTTGTAAAGTGGAAGAGAGAGCTGCACAGAAATCATGtttactaatatatattttgtgcatAAGGCATTCGCCAAAATAAAAGTGATAATTATAGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240507 lncRNA downstream 56349 18348298 ~ 18348654 (-) True G177559
TU240503 lncRNA downstream 66171 18338544 ~ 18338832 (-) True G177555
TU240489 lncRNA downstream 66537 18263803 ~ 18338466 (-) True G177546
TU240499 lncRNA downstream 76824 18324755 ~ 18328179 (-) True G177551
TU240488 lncRNA downstream 137496 18262603 ~ 18267507 (-) True G177545
TU240523 lncRNA upstream 55195 18504398 ~ 18531635 (-) False nsd3
TU240538 lncRNA upstream 85682 18534885 ~ 18537687 (-) True G177584
TU240543 lncRNA upstream 99807 18549010 ~ 18550867 (-) True G177589
TU240552 lncRNA upstream 112149 18561352 ~ 18565313 (-) True G177596
TU240560 lncRNA upstream 165689 18614892 ~ 18615995 (-) False LOC111195059
XM_022681166.1 mRNA downstream 16600 18349905 ~ 18388403 (-) True LOC103021760
XM_007254943.3 mRNA downstream 87441 18307853 ~ 18317562 (-) True LOC103046908
XM_007254944.3 mRNA downstream 87442 18307853 ~ 18317561 (-) False LOC103046908
XM_007254941.3 mRNA downstream 102961 18257392 ~ 18302042 (-) False LOC103046193
XM_007254940.3 mRNA downstream 102961 18257392 ~ 18302042 (-) True LOC103046193
XM_022681167.1 mRNA upstream 9801 18459004 ~ 18482114 (-) True LOC103023096
XM_022681169.1 mRNA upstream 9801 18459004 ~ 18482113 (-) False LOC103023096
XM_022681168.1 mRNA upstream 11606 18460809 ~ 18482114 (-) False LOC103023096
XM_022681170.1 mRNA upstream 18053 18467256 ~ 18482115 (-) False LOC103023096
XM_007254953.3 mRNA upstream 25613 18474816 ~ 18482116 (-) False LOC103023096
TU240520 other downstream 1995 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 230478 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 2614359 15780555 ~ 15790644 (-) False stoml2
TU238972 other downstream 2839540 15529393 ~ 15565463 (-) False LOC111194989
TU240722 other upstream 641943 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 670583 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2842319 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 3484316 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 4006294 22455497 ~ 22456779 (-) True G178426

Expression Profile