RNA id: XM_007254968.3


Basic Information

Item Value
RNA id XM_007254968.3
length 3080
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC103028061
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18817912 ~ 18829242 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAACCACAGGATGTAGATGTAAGAACACTGTGTACACTGCAGCCGCAGATCACAAAACGCAGAACCGCCTTGGAAATGCTGATCACTCGCCCGGCAGAGTGATAACCATGCCTGATAAACCCCAACCCTCGCTCCTATCGCCTCCATCTCCTTCATCAGGGCCCTCAGAACAATAAGAGCGAGGAACCGGCTGGAGAACGCCGGTGATATGAAACCGACGGCAGCCCGAAAATGAACGTCTCCAACTTCTCCAACTCAGCCCCATACCACAACCCCTTGCAGTCTTTCCTGGGCCTGCCCATAGCTCTTATCATTTTCATGACTGTGGCTGGAAACCTGCTGGTAATCCTGGCTGTGATGCGAACCCCTCAGCTCCAGAACATCACCAGTGTCTTCATCATGTCTCTGGCCTGCGCTGACCTCATTGTGGGCTGTGTGGTCCAGCCCCTGGGCTCCACCATGCTGCTGACCGGAAACTGGCTGCTCGGGAAGAGGGCCTGTGACCTCTGGACCTCGGTGGACGTCCTGTGTGTGACTGCCAGCACTCAGACCCTCTGCGTTATCGCTGTGGACCGATACGTGGCCGTCACCAGACCGCTGCGGTACAAGGCTCTTCTGAACAAGTGGAGAGCCAGATTCATTGTCTGCACTGTGTGGACAATATCAGTCTTCGTCTCCTTCGTCCCCATCATGGGCGGTCACTTCCGGGCTCCCGATGATCTTTCAGACAAAACCCAAAACTGCTTGGACGACCCAAGGTGCTGTGACTTCATGCCCAGCGAATCCTACGCCATCGTCTCCTCCATCATCTCCTTCTACATTCCTCTTCTGGTGATGATCTTCGTGTACGGCCAGGTGTTTATCATCGCAAACCGGCAGGTGAAAATGATCGCTAAGGACAGGCAGCGATTCAGAAGCAGCGACGATTACCAACTCGCAGAGGAACCGTCTGCAGGAGCAGCAGAACTGGCCCAGAATCCAAACCGAAGGTCATCCAGAAATATTGTTCACCAGCACCGGGCCCTGAAGACACTGGGCTTCATCATGGGTGCGTTCATGCTGTGCTGGCTGCCATTCTTCGTGGCCAACATCGTGGTGACGTTTAGGTCGGCGAGCAGAACTGAGGCAAAGGAGGACGACGGCGACCTGCAGAGGAACATGATGACTCTGAACTGGCTGGGATACATCAACTCCGGCCTGAACCCCATCATCTACTGCCACAGCTCTGACTACCGCGCCGCCTTCCACAGCCTGCTGTACCTCCTAAAGCCCAAGCGGACCGGCCTGGCCGGGCTTTATAAGCGGCTCAGGCTGCGCTGCCCCTGCCTGTCCAAATCTGGGACGGTCCGGGTGAGCTGCTTAGACCAAAAGGCATTCCTGCAAAGCGACAGAACCCAAAACACCACGCAACCTCAGAGCAGCACTACCGTCTTCTGCAGTGGAGTAACGACGTTAAGCTGACCCTGTCCTGCAGCCTGACTGGGACATGTCCCAAAGCCTGACCACACACCAAAGCCTGAAGACACGACCCAAAGCCTGACCACACACCAAAGCCTGAAGACACGCCCCAAAGCCTGATAACACACCAAAGCCTGACCACGCCTAAAGCTTGAAGACACACCCCAAACACTGAGTGACACATCCCAAAGCCTGACAACGCCTAAAGCCTGAAGACACGCCCCAAACACTGAGTGACACACCCCAGTGCCTGACCACGCCTAAAGCCTGAAGACATGCCCCAAAGCCTGATGACACACCCCAGTGCCTGAAGACACACCCAAAGCCTGATGACAAACCCCAAAGCCTGAAGACACGCCCCAAAGCCTGACTACACAGCAAAGCCTGAAGAAAAACCCCAAAGCCTGACCACGCCTAAAGCCTGAAGACACGCCCCAAACACTGAGTGACACACCCCAGTGCCTGACCACGCCTAAAGCCTGAAGACACGCCCCAAAGCCTGATGACACACCAAAGCCTGACCACGCCTAAAGCTTGAAGACACACCCCAAACACTGAGTGACACACTCCAAAGCCTGACAATGCCTAAAATCTGAAGACACGCCACAAACACTGAGTGGCACACCCCAATGCCTGACCACGCCTAAAGCCTGAAGACACGCCCCCAAAGCCTGATGACACACCCTAAAGCCTGACCACACCTAAAGCCTGAAGATACGCCCCAAACACTGAGTGACACACCCCAATGCCTTACCAGGACACACCCCAAAACCTGATGACACACTTTAAAGCTTGCCCGGGACACGCCCCAATAACAGACCGAAGCCTGAAGACATGCCTCAAATACTGAGTGATGCCCCAAAACCTGACGACACACCCCAAAGCCTGATCGGGACACGCTCCAAAGCCTGATGACACACCCCAAAGCCTGACCATGCCTCAATAACTTACCCAGCCCCAAAGCCTGAAGACACGCCTCAAACACACCCCAAAAGCCTGATCGAGACATGCTTCAAATACAGATCCCCCAGCTTCCTCTTttaaagaaacagacagaagcAGAACCTCTGTTACACCAATAATCAATAACTAATAATCAATTACAGCAGTCTCACAAGCATTAAAATCGGCCTGTTTCCCCACACAGCAGAAACATCTCTCACCTCTGTTTGGGTCTGATCTGGTACCTGCTGGACACGAGTTTGTTTGATTGCACTTTTTTATAGAGCACTTTGTGAGATtactgaaatataaataaaggaatGTTGGGAGTGACTGACCGCACAAAGACGAATgttatagaataaataaaatctctccTCAGTGAGGTGAGCACCGTGTATTAGCCTTATAGTTATTTATTTCGATTTATTTGTAGCATCACTGCGGTTGTTTTAATTGGACTGACTTCCACTGATGAAGGACAGACTTTGAAAACAGAACGGCAGagtaattttacagtaaatgaatGTCCACCTGAACTGTTTAACAATGAAACTGTGTAATTTAATGAAAACTGTTAAATGTTCAGGTGGGAAAACAGTATTAGACATTGTTATTTCagactgtattattatttttgttttaggttaaaatatatacagtgtattaatgtattaat

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240186 lncRNA upstream 116223 18700992 ~ 18701689 (+) True G177324
TU240187 lncRNA upstream 116223 18701413 ~ 18701689 (+) False G177324
TU240171 lncRNA upstream 166373 18648763 ~ 18651539 (+) True G177314
TU240154 lncRNA upstream 169809 18645627 ~ 18648103 (+) True G177300
TU240152 lncRNA upstream 208783 18604544 ~ 18609129 (+) False G177298
TU240232 lncRNA downstream 16453 18845695 ~ 18847305 (+) True G177349
TU240286 lncRNA downstream 186143 19015385 ~ 19016720 (+) True G177392
TU240291 lncRNA downstream 211893 19041135 ~ 19042186 (+) True G177397
TU240297 lncRNA downstream 214465 19043707 ~ 19045097 (+) True G177401
TU240298 lncRNA downstream 214465 19043707 ~ 19044262 (+) False G177401
XM_007254967.3 mRNA upstream 11361 18792369 ~ 18806551 (+) True anxa4
XM_007255028.3 mRNA upstream 79176 18690932 ~ 18738736 (+) True LOC103045675
XM_007254966.3 mRNA upstream 172742 18638918 ~ 18645170 (+) True LOC103027413
XM_022681174.1 mRNA upstream 254136 18560339 ~ 18563776 (+) False LOC103044763
XM_022681173.1 mRNA upstream 254136 18560340 ~ 18563776 (+) True LOC103044763
XM_007255030.2 mRNA downstream 6574 18835816 ~ 18840424 (+) True LOC103046295
XM_022681186.1 mRNA downstream 127452 18956694 ~ 18984284 (+) True LOC103046599
XM_007255032.3 mRNA downstream 181631 19010873 ~ 19030800 (+) True LOC103046910
XM_022681188.1 mRNA downstream 203818 19033060 ~ 19037673 (+) True ess2
XM_007254978.3 mRNA downstream 203818 19033060 ~ 19037673 (+) False ess2
TU240134 other upstream 273915 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 487423 18324873 ~ 18330489 (+) False LOC103047412
TU240029 other upstream 591779 18224273 ~ 18226133 (+) False G177219
TU240030 other upstream 591779 18224273 ~ 18226133 (+) True G177219
TU239536 other upstream 1770923 17042835 ~ 17046989 (+) True G176882
TU240867 other downstream 891059 19720301 ~ 19722389 (+) False LOC111194983
XR_002651455.1 other downstream 921700 19750942 ~ 19775791 (+) False LOC103042206
TU241050 other downstream 1260019 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 1309580 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 3419902 22249144 ~ 22301065 (+) False LOC103046694

Expression Profile