RNA id: XM_007255028.3


Basic Information

Item Value
RNA id XM_007255028.3
length 4056
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC103045675
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18690932 ~ 18738736 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGACCAGTCCGTTCCCgcccacacacagcagcagaacCAGCAGATACGACAGGATGAAGCCCAGCGCCATCCCAGAGGAGTGCAGAGAGCAGCTGAAAGTTTCTGGGTGCAGAGTTGAGCTGCTGGTTGCTGTGCTGGTTTCTGTGCTGGTCGCTGAGCtgggatggtgtgtgtgtactgggCCAGGCTGGCTGGGgtgctggtgctgctggtgctgctggttGGTGCAGCTGATGGACAGGTATACCAGCGCTGGGAGGCGGGGTCATCGTGCTACGGCGGGTTCGACCTCTACTTTGTTCTGGACAAGTCTGGAAGTGTGAAACACCACTGGAATGAGATTTATTACTTTGTGGATCACCTGACGCACAAATTCATCAGtccTCAGCTCCGGATGTCCTTTATCGTTTTTTCAACGGAGGGCCGGACTTTGATGGAGCTAACCGATAACAGGGATCAGATCAGCGCTGGGTTGGAGCAATTGATGCAGGTGTTGCCGGGAGGAGATACCTTCATGCATAAGGGCTTTGAGAAGGCCAGTGAGCAGATCTACTACGCTACAGGAGATGtGTACCGCATGGCCAGCGTCATCATCGCTCTGACGGATGGAGAACTGCGCGAGACTCAGTTTGACCTGGCAGCGCGAGAGGCGGATCGGTCGCGGCAGCTGGGAGCCACAGTGTACTGCGTGGGAGTGAAGGACTTTAATGAAACTCAGTTGGCCACGATAGCGGACAGTAAAGAGCACGTCTTCCCTGTGAACGACGGCTTTGAGGCTCTGCAGGGCGTCATTGACTCAATCCTGAAGAGGTCCTGCATTGAGATCCTCGCCGTTGAGCCATCCACCATCTGTGCAGGAGAATCCTTTGATGTGGTAGTCAGGGGAAATGGATTCCTCTCCACGCGGGATGCAAGTCGGGTACTCTGCAGCTTCCATATCAACGACACCGTCACCATCATGAAGAGGCCGCTGCTGGTGGAGGATACGTATCTGCTCTGTCCAGCGCCGGTGCTGAAGGAGGAGGGGACGTCCGCCTCCCTCCATGTCAGTATGAACAACGGTCTGAGCTTTATTTCCAGCTCCATCACCATCTCCACACTGCGCTGTGTGAGTACAGTACGGTCTCCAGGCTCTTCCACTACCAGCACCACTACCAGTACCACCACaagcactactactactactactactaccagtACCAGTAGCAGCACCGCCGCCGCACTGCCCACTAGCTCAGCTCCAGCGTCAGTCTGCCCACAGCTCACAGTGGACGGGACGGTTCTGGCCATTGCTCTGCTGATCCTGATGTTGCTGCTGGCCGTAGCTCTGCTCTGGTGGTTCTGGCCGCTCTGCTGCACCGTGATCATCCACGAGCCCCCGCCTCCGCCACCGCCGGAGGACAGCTCGGATGAAGAGGAGGACGGCTATCCGAAGAAGAAGTGGCCGACAGTGGACGCCTCTTATTATGGGGGGAGGGGAGTCGGCGGCATTAAACGCATGGAGgTGCGGTGGGGAGATAAGGGATCTACAGAAGAAGGGGCGAAGCTGGAGTTGCCGAAGAATGCCCGTGTGAAGATGCCCGAGGAGGAGTTTGAGTTCCCTCCGACCCGAACCCTCAACAACGGCATGCGCAAACCCATCCGCCCACAGAAGTGGTACTCCCCCATTAAGgggAAGCTGGACGCTCTGTTGGTGTGGTTGAGGAGAGGATATGATCGTGTTTCTGTGATGAGGCCGCAGCCCGGAGAGAAGGGTCGCTGTATGAACTTCACCCGGGTCAAATCGTACCCGCCCCCTCGGTACCCCCGCAACAACAGCTCCATCGACAACCAATCCAGACACATCTACAGCCTGCCCCATAGCTCTGCCCCTCCTGCACCAAAGAGCAACCTGCCCCCAACCCCGCCCTGCTACCCCACCCACTCCACAGACCCGCCCTGCAACTACCCTGACCACCTCGCCTACCCCTGCCACTCCCCCACCACCTCATTGCCCCCCCTACCTCTAACCCCACCCCCAACATCCATTAGTCCACCCCCTTACACTCCTCCACCCACCAGAGCTTTACCACCAGCCTCCTTCACTCTCACTTTGGCCCCGCCCCCCTCTCCACCAACCGCCTGTCTGTCCCTATCAGTGACTGGCTCACTGCCCCCGCCCCCTCATTCTGCCCCACCTGGCAGAGCTCCTCCTCCCTCCCGCCCTCCACCGCGCCCCTCCCACGACGATCTCCAGATCTGATTGGGTCTTGCAGGGTCCATCTTACAATGAGGAACTTCTCCAACCCAATTGGAGGATCCAGTCCGAGTTACTCCACCCATCTACAGGTTTCTCCAAGTTCTCCACCAATCATGTGACCACCAATCGGCTCAGATCAGGACATGGATGGGATTTTATGTTCTGGACGAGGTTCTAGAAAGATCAGTCCAAAATACGCAACTTCTCTGCTCAAATTCATCTAAAGAACCAAAAGCTTCAGAGACTTTCCACGCTTTCCATCCTGTCTGAACATTGGTCTGGACCTCCAGTGGAAACTTTCTTTAAACATCTAAACAATTTGCCAAAGGTTGAGAATTtttgagaattaaaaaaaaaaaactttttaaaaatgtcttccTATACATTCCAAATCAGACCAGGGTCAGTTCTCGAAGGTTAGAGTTGAGCACAGTTTGGTTGTTTCCCAGCTTGAAGACACTtgaacacatctggaaacatATTAACTCAACTGGTCGAGTTATTTAACTAACTAATTGGCACCTAATCGAGTTAATGCTACATCAAACAAAACTTTATATTCATAAGAAATGTGGTGGTGGTTCAGCTAAAATCCATATTATACCCACTACCAAGCGTTTCTGATTTGCGTAGTTGGTGTTTTATGATTTGGTCTAGGTTCTGTAAAGATCTGTCTTAATATGGAACTTCTCTGCTACAAAAGTTCAACTCAATTCATGTTCAGTCAAATCTGATGCAAACAAATTTACCTTAAAAACCAGAAAGCTTCAGAAACTTTCCATCTTTTCAGCGCTTTTCATCCTGTTTAGACAACAGTCTGGACAAGCTCAGTGTTCTCCGGTGAACATCAACTCAAAATCTAAACTTTTTAACAAATCTAGAGCATTTTTAAgactttaaaaaagtgtaaattccTTCCAACTCATTTCTAAATAAGGTAGGCCAGAGTTGAGCACAACAGTTGTAGCGACCTGCCAACTAGTCAAACTTCAGTCAACTGATCGAGTTATTTGACTAACTAATTTGCAACACATCCTCAGTAATAACCAAAGTCCATGTCACATTACCAACAAATGTCAATGTGTCAAATCAGACGAATCAGGGTGTCCAGCATCAGTTCTGGAAGGTCAGAGTTGACCAGACCTAGCTGGCAACTAATATAATTCAGTCAACTAGGTGGGATAGTTGGGTTATTTATCTGGATTAAttttaaggcccaatcccagTTGCCCCTCAGTTTTGCGTGTTCAGGTCTAGAGGTAGGGGGTCCGGATTCTCGTTAGGCTGtaggggtaggttaggggaaaTGTTGGGGCTACATGATCCTTCACACAGAGATTTTTTAAAGGAACACTCCAAACAGAGAGTTAtgtaccatagtttaatgtgtagtttaaatgtttaatggtAATTCTCTTTATAACAACTCTGTTCTAAGGGTAAGTATCACACTCCAAAATAAGGGGTACTGTACAAATTAGAAATTGGATTGGGCCACAATCACACCAAACATTCAGAACAAAGTATAACAGTTCTATCGTAACTTTGTAGAGATGGGTCTTAGTGTATCAAACTCTCCTTAGCACTGAATGTTTTCTCAGAATCGATCAGTTTAAATCTGTATAAATGTGTTGACAAACGCGCCAACGCAACAAACTTTAGGTTTCTCAGATTTCTTGATGTTTctcttaatatattaaaatcttTTGGAGTATGTTGTTGCAGGTGGGTGTGGTCTTAGCAATCACTAATAGCAACATGCAGTAGCTGAAACAGAGTGCTTACGCGACCTATTCCTCACATATGGTACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240171 lncRNA upstream 39393 18648763 ~ 18651539 (+) True G177314
TU240154 lncRNA upstream 42829 18645627 ~ 18648103 (+) True G177300
TU240150 lncRNA upstream 81803 18604544 ~ 18609129 (+) True G177298
TU240152 lncRNA upstream 81803 18604544 ~ 18609129 (+) False G177298
TU240151 lncRNA upstream 85858 18604544 ~ 18605074 (+) False G177298
TU240232 lncRNA downstream 106959 18845695 ~ 18847305 (+) True G177349
TU240286 lncRNA downstream 276649 19015385 ~ 19016720 (+) True G177392
TU240291 lncRNA downstream 302399 19041135 ~ 19042186 (+) True G177397
TU240297 lncRNA downstream 304971 19043707 ~ 19045097 (+) True G177401
TU240298 lncRNA downstream 304971 19043707 ~ 19044262 (+) False G177401
XM_007254966.3 mRNA upstream 45762 18638918 ~ 18645170 (+) True LOC103027413
XM_022681174.1 mRNA upstream 127156 18560339 ~ 18563776 (+) False LOC103044763
XM_022681173.1 mRNA upstream 127156 18560340 ~ 18563776 (+) True LOC103044763
XM_022680716.1 mRNA upstream 132488 18540114 ~ 18558444 (+) True LOC103024155
XM_007254956.3 mRNA upstream 153884 18524865 ~ 18537048 (+) True letm2
XM_007254967.3 mRNA downstream 53633 18792369 ~ 18806551 (+) True anxa4
XM_007254968.3 mRNA downstream 79176 18817912 ~ 18829242 (+) True LOC103028061
XM_007255030.2 mRNA downstream 97080 18835816 ~ 18840424 (+) True LOC103046295
XM_022681186.1 mRNA downstream 217958 18956694 ~ 18984284 (+) True LOC103046599
XM_007255032.3 mRNA downstream 272137 19010873 ~ 19030800 (+) True LOC103046910
TU240134 other upstream 146935 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 360443 18324873 ~ 18330489 (+) False LOC103047412
TU240029 other upstream 464799 18224273 ~ 18226133 (+) False G177219
TU240030 other upstream 464799 18224273 ~ 18226133 (+) True G177219
TU239536 other upstream 1643943 17042835 ~ 17046989 (+) True G176882
TU240867 other downstream 981565 19720301 ~ 19722389 (+) False LOC111194983
XR_002651455.1 other downstream 1012206 19750942 ~ 19775791 (+) False LOC103042206
TU241050 other downstream 1350525 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 1400086 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 3510408 22249144 ~ 22301065 (+) False LOC103046694

Expression Profile