RNA id: XM_007255042.3


Basic Information

Item Value
RNA id XM_007255042.3
length 1537
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC103023409
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19896737 ~ 19918977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTCCCCTCTGTCTCCGCCCCCCGTCCCAACTCTTCCTCTGAGCTCCAGCAGCCCCTCTCTCTGCTGCCGGCACTTTTAGCAGCAGCTTTACAGCAGCAGAATGCCTCCAGGGCCTGTAGTAGGAAGCTGATGATCATGCAGGTAAATTAACACAGGTTTAAATGATGGGCAGCGGTCAGGAGCAGAGCCGTTTCTTCATCAGTCTGGTGTTTCTGAACGATAGCGGGACTGAGGGTGAGCTACAGGTCTCAGGAAAGGACCAGCATCAGGACCTCAGTGTGCAGGTCAGCAGAGACACAGCGGGCATCACTCTCACTGTGGAGAACGGTGATGGAGTATGTGTCTTCAGGTTCTCCATCTCCAGGGAGACGGAGTGCTGCCGGGTGGGCGGTCAGTCCTTCCTCATCACCACCAGCTGTGTGAGCGTCCTGCTGCGATTCCGTACTCGACCAGACTTCCAGAGTTTCCACAGTTTGCTAAAGTCATGGTTGGACTCCAGCAGGGAGATGTCAGTATTTGACCAGAGGACAGACAACTCATCTGCCCTCCAGTACTTTCAGTTTTATGGCTGTCTCTCTCAGCAGCAGAACATGCTTCAGGACTTTCTGAGGACGGCCACGTACCAAAAAGCCATTCTACTGAACGACGTCGACTTCAGAGATAAGGTAGTGCTGGATGTGGGCTGTGGAACTGGAATACTCTCTTTCTTCGCTGTTCAGGCTGGAGCTAAGAGAGTGTATGCAGTGGAGGCCAGCTCAGTCGCCAAACATGCAGAAGTTCTGGTCAGGAGTAACGGCATGTCGGACAGAATCACTGTGCTAAACGGGAAGATCGAGGAAGTTTCCTGTCCAGAGAAAGTGGATGTCATCATCTCAGAGCCTATTGGATACATGCTCCTCAACGAGAGGATGCTGGAGAGCTACCTTCACTCCAAACACTGGCTGAAGCCCAAAGGTATGATGTTCCCAACCTTCAGTGACATCCATCTGGCTCCCTTTACTGATGAGCAGCTTTACATGGAGCACCATGCACGCTCCAGCTTCTGGCTCCAGACGAGTTTTTATGGGGTAAACCTGAGTGGTCTCCATCCTGTGGCCGTAGAGGAGTTCTTCAGACAACCAATAGTGGACACTTTTGATATGCAGATTCTAATGGCCAGGTCTGTAAAATACACCATTAACTTCCTTGAAGCTAAAGAAGAAGACTTGCATAGGATGGAAATTCCCTTTGTCTTCAAGCTGCTGCAGTCAGGACTGATTCACGGCCTGGCGTTCTGGTTTGATGTGGCGTTTGTAGGATCGAGGATGACTGTATGGCTGTCCACCGCCCCCCACGAGCCCCTCTCTCACTGGTACCAGGTCCGTTGTCTCCTCCAGACTCCTCTCTTTGCCAAAATGGGACAGACCCTGTCTGGACAGGTTCTACTTATTGCCAACAAGAGacAGAGTTATGATATTCACATCACAGCAGTCGTCGATGAGTCCGGCTTTAAATCTGGAAACACGTTGGATCTCAAAAATCCTTTCTTTCGGTAG

Function

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0009405 pathogenesis biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240961 lncRNA upstream 6025 19890267 ~ 19890713 (+) True G177861
XR_001518763.2 lncRNA upstream 20348 19875366 ~ 19876390 (+) True LOC107197765
TU240916 lncRNA upstream 63628 19795144 ~ 19833110 (+) True G177830
TU240919 lncRNA upstream 78028 19818233 ~ 19818710 (+) True G177833
TU240896 lncRNA upstream 117202 19776332 ~ 19779536 (+) False G177826
XR_002651456.1 lncRNA downstream 32543 19949596 ~ 19955474 (+) True LOC111195063
TU240988 lncRNA downstream 73591 19990644 ~ 19995167 (+) True G177885
TU241057 lncRNA downstream 183523 20100576 ~ 20100802 (+) True G177940
XR_002651458.1 lncRNA downstream 188281 20105334 ~ 20123848 (+) False LOC111195064
XR_002651457.1 lncRNA downstream 204193 20121246 ~ 20123848 (+) True LOC111195064
XM_022681206.1 mRNA upstream 120947 19750942 ~ 19775791 (+) True LOC103042206
XM_007255020.3 mRNA downstream 2824 19919877 ~ 19932820 (+) True pum3
XM_007255022.3 mRNA downstream 172185 20089238 ~ 20096711 (+) True LOC103043854
XM_007260831.3 mRNA downstream 232205 20149258 ~ 20150118 (+) True LOC103030097
XM_007260825.3 mRNA downstream 235408 20152461 ~ 20155315 (+) True LOC103027562
XM_015608721.2 mRNA downstream 312474 20229527 ~ 20257745 (+) True smad2
XR_002651455.1 other upstream 120947 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 174349 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1352741 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 1566249 18324873 ~ 18330489 (+) False LOC103047412
TU240030 other upstream 1670605 18224273 ~ 18226133 (+) True G177219
TU241050 other downstream 172208 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 221769 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 2332091 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2543339 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2543339 22460392 ~ 22465702 (+) False LOC103025565

Expression Profile