RNA id: XM_022681285.1


Basic Information

Item Value
RNA id XM_022681285.1
length 2147
RNA type mRNA
GC content 0.50
exon number 7
gene id ppp2cb
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23503307 ~ 23514711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGCATCCTCCGCGAATGCCTTTGCGATGACGCCGATATGAGGCAAACGCAGAGCGGCCATTACACAGCGAGTTTCCCAGGGAAGGTCGGGAGGGAGAGAGCGGGGGAGCCACTGAAATAGATCCGCCACACCGCGCCGTAGGTCCCGCCGAGCCGCCCTCCATCAGCACGCGTACAGACGGGAGAACGCGCGGAGTCGCCTGTTTTAGAGCCGCGGTCTCCCCGCTTTCGACGGGTTCAGCTAGATAAAGTGTCCGGGGTAAAGCAGCCCTCGGTCGGCTAAGCTAAGCCGAGCTAAGCGGCCGCCCGCACCGCTGAGCCTAAATCCAGCCGGCTGGtcgctaggttagctagcgaGCTAAACGACGCCAGCAGGAGCACACAGCCGGTTCTGAGGGGGGTTTCACCGGGTACCGGATTACACAGACCTCCGCTCAGCCCCAGAAACCATAGCTAGAGGCCCGTACTGCGCTCCAGGACGCGCCGAGGATGGATGATAAAGCCTTTACTAAAGAATTAGACCAGTGGGTCGAACAGCTGAACGAGTGTAAGCAGCTCACCGAGAACCAAGTGCGGACCCTCTGCGAGAAGGCTAAAGAGATCCTGACTAAGGAGTCCAATGTACAGGAGGTGCGCTGCCCCGTCACAGTATGTGGCGATGTGCACGGGCAGTTCCACGACCTCATGGAGCTGTTCAGAATTGGAGGAAAGTCGCCCGACACCAACTATCTGTTTATGGGCGACTACGTAGACAGAGGCTACTACTCGGTGGAAACGGTCACACTTCTTGTTGCGCTAAAGGTGAAGAAATTGGAATATTGCCGTCGTTTTCCAGAACGCATAACGATATTGCGCGGAAACCACGAGAGCAGACAGATTACACAGGTTTATGGATTCTATGACGAGTGCTTGAGGAAATATGGCAATGCAAATGTCTGGAAATATTTCACTGACCTCTTCGACTACCTACCCCTCACAGCTCTGGTTGATGGACAGATCTTCTGTCTGCATGGTGGGTTGTCTCCATCGATAGACACATTGGATCACATTCGTGCTTTAGATCGTCTCCAGGAGGTGCCACATGAGGGCCCAATGTGTGATCTGCTGTGGTCAGACCCTGATGACCGCGGAGGCTGGGGCATCTCTCCCAGGGGTGCTGGATACACCTTTGGCCAAGACATTTCTGAAACTTTTAACCATGCCAATGGTCTTACCCTGGTCTCCCGTGCCCATCAACTTGTTATGGAGGGATACAACTGGTGTCACGATAGAAATGTTGTCACCATATTCAGTGCGCCAAACTACTGCTATCGCTGTGGCAACCAGGCTGCCATAATGGAACTGGATGATACTCTTAAATATTCCTTCCTTCAGTTTGATCCTGCACCTCGGCGCGGAGAGCCTCACGTCACCCGCCGCACCCCCGATTACTTCTTATAAACACGCACTGGCCTGACGTAGGAACACGACCTCTAAAGTAAACACCACCACAATGCGGCAGATCCCGACATGTATACATTTTCATCCCAccgcgcgagtgtgtgtgtgtgtgtgtgtatatatacggGGATGTGTcatgacatgacatgaaagCACTAACATGGACCAAAATGTGCCATACAAGCATTTAATGCAGAATTACAAATTGCCCTGTGTCTCAGTACTGCTACACAGTGTCCCGTTTAGCCTATAGTGCAATTGCCTGCTGTATACTATGGATAGTAATGTTCTCTTTGTTCTTGAATTGTACATTACTctgagcaaaacaaaaaaagtgatcTTTAGCTTTTCTCCCCTTCGGTATCACTGGACAAAAACGATGTACTTTAAGTTGGCGATGCCCGGCATGTGACATAAGGTAACATTTTATACAAGTGCACAAGCTTACATCCTTTCCTGTCTTCACCAAAAAAGAAACACTATGCTATTCTATTGGGAATGAATGCTTAATCTGAGGGAGAAGCCTCTTCCTTTTTGGGAGTGTATGCTTTCATGTATATGAAGCCCTATCTTAACTCAAACTCTGTTCCCCCTTTGTCTAATCTTACCATTTTTGTGTTTACTGTCTTTTCTGTGTATTTGTCATGAAGTGATTGCCTCTTCTTTGGTGTATTTGAACTAATAAAGTACTTTTAATCGCAAGCTA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242008 lncRNA upstream 2966 23499843 ~ 23500341 (+) True G178632
TU241985 lncRNA upstream 28102 23447089 ~ 23475205 (+) True G178611
TU242000 lncRNA upstream 70596 23427385 ~ 23432711 (+) True G178624
TU241999 lncRNA upstream 76810 23425155 ~ 23426497 (+) True G178623
TU241991 lncRNA upstream 84964 23411105 ~ 23418343 (+) True G178617
TU242013 lncRNA downstream 864 23515575 ~ 23515901 (+) True G178635
TU242010 lncRNA downstream 1600 23516311 ~ 23519214 (+) True G178634
TU242192 lncRNA downstream 673275 24187986 ~ 24191257 (+) True G178781
TU242218 lncRNA downstream 777264 24291975 ~ 24293344 (+) False G178805
TU242219 lncRNA downstream 777264 24291975 ~ 24293344 (+) True G178805
XM_022681284.1 mRNA upstream 5689 23494154 ~ 23497618 (+) True LOC103034079
XM_022680722.1 mRNA upstream 9007 23479537 ~ 23494300 (+) True LOC111188215
XM_022681283.1 mRNA upstream 41332 23459368 ~ 23461975 (+) True purg
XM_007255267.3 mRNA upstream 286049 23203476 ~ 23217258 (+) True fut10
XM_022681270.1 mRNA upstream 316083 22995090 ~ 23187224 (+) True LOC103038592
XM_022681286.1 mRNA downstream 27139 23541850 ~ 23690355 (+) True LOC103037096
XM_007252428.3 mRNA downstream 933081 24447792 ~ 24451993 (+) True LOC103032894
XM_007252430.3 mRNA downstream 957495 24472206 ~ 24482883 (+) True gramd2b
XM_007252431.3 mRNA downstream 990926 24505637 ~ 24509580 (+) True phax
XM_022681293.1 mRNA downstream 1010102 24524813 ~ 24542250 (+) True lmnb1
TU241823 other upstream 538318 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 793750 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 957177 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 1001148 22493440 ~ 22502159 (+) False LOC103022948
XR_002651470.1 other downstream 189276 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 933169 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 987163 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3399175 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 4009607 27524318 ~ 27525389 (+) False LOC103038954

Expression Profile