RNA id: XM_022681280.1


Basic Information

Item Value
RNA id XM_022681280.1
length 3856
RNA type mRNA
GC content 0.42
exon number 8
gene id nrg1
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23256525 ~ 23403475 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCGTGCAGTGAGGAGGAGAGGACCTACTGTGTGAATGGAGGAGATTGCTTCACTCTGGAGGTCACGCCCAACAGCATCAAGCGCCTATGCAGGTGCCCCCCAGGATTCTCAGGGGACCGCTGTCAAAACACAGAGCCTGTGAGAGTCATAGACCCGAAACGTGCCCATCTGACTTTACTGGTGATCGCTGCCAAACCTACGTAACGCCCAGCTTCTACAAAGCTGAGGAGCTGTATCAGAAACGTGTATTAACAATAACCGGCATCTGCATTGCTCTCCTAGTTGTTGGCATCATGTGTGTGGTGGCCTACTGCAAAACAAAGAAGCAGAGGAAAAAGCTGCATGATCGCTTGAGGCAGAGTTTACGAGAACGCAACACCATGGCCAGCATGGCCAACGGCCCCATGTACCCCCAAGACCACCACCCACCACCGGAGAACCTGCAGCTCGTTAATCAGTATTCCTCCAAAAATGCCGTCCCTGCTCAGCATGTGATCGAGAAGGAAACAGAAACGCTGTTTTCCACGAGCCAGTACACATCGTCCACTCAGCCGTCCACTGCAGTCACACAGACCTCCAGCCAGTGCTGGAGTAATGGAAAGACTGATAGTGTGGTATCGGACAGCCATTCCATCCTGGTGATGTTATCAGCTCAGAACAGCAGGAATGGCACCCCCACACATCGGGGGCGTCTGAATGCCACCGGCGGAGCCAGAGAACTTTACCTGAAGAACTCAAGAGAAACAGTGGATTCCTACAAGGACTCTCCATACAGTGAGAGGTATGTTTCAACCATGACAACACCGACCCGCCTGTCACCTGTGAAACTGCTGTCCCCGGCAACgccctcctctcctccctctgaGATGTCTGCGCCTCTCTCCAGCCTAGCAACCCCCATCCCTTCCATGGTGACCAGCCCTTCAGGTGAGGAggagcgccccctgctgttcctCACACCCCCGTGTCTCCGGGAGAAGGCAGAGCAGGAGTCCAGCCGGGCCCAGCAGCTCCGTAACTCTGCCCACTATAACCACGGCCTGGATTCCCCCAGCCCCCCGCCCAGCCCACTGCACATTACTGAAGAGGACCAGTACGAGAGCTCACCGGAGAATAACGGTCCAGCTGCCGTCCCCCCACCTGCCGCTGACCCCAACAGCCCCACGCCTGACCACGGCTCTCACAGAACAAAACCCACAGCCCAGGCCGACCAGCCCGAGCAGAAGCCGGCCAGTGGAGGCAGCTCCGAGGGCAACTGCCTGGAGAGCGAGACAGAGGACGAACGAGTGGGCGAGGACACGCCCTTCCTCAGCTTACAGAACCCTGCAGCCTCAGGCACGGGGACGCTCAGCCTGGACGGCttggacagcagcagcaggactaACCCCGCCCTGAGGCTCTCCCCACAAGACGACTTACAGACCAGACTAGCCAACGTGATGGCCAACCAAAATCCTATTGCTGTGTAAAAGTGGACATACCAACCAACCAACGCTTAGAAAaagattaataatttaaaaaaaattacatcagaTACTAAAAAATTATACAACAGAGTCAACTGTAAacctttattttctaaaaagtaAGTATTTGAGGGAACTAAGTAAAAAactataacttttattttagtgaCGTAGTGAAACAAAGTCTTTTATAAATTGCaatgtgtataaaatgtgtttgcatCATGAATGAAAGTGCCATTCACCTATGTAGCACTGGTCACAGTATTTCAAGTGCGGAAAAAAATATCAATGGTGCCTTTAATTTCAGCATGGAGAACTTAAGGAAACTGCATTATGACCCTGGGCCATATATTCATGATTTATATCCAGCACTGACACACATTACAGTTAGAGAACGGTATGAATTCTCAAACAAAATGCTGAGCAAGCCACGCGGCAAAGTATTCTTTCCATATGAAttaatataatcatatatagtaatatatactatttatttaaagaaaggtTTGAAAGAAAATACCTTGttataatgaacaatataataacatttatcttaatattattattgctaaaatatacagcttaaaaagtgtgaaaatatgAATGTATCCAGTTCACTAAACCAGGCAGGACATGTTTGGCTgctattgctgttttttttgtagacTGTATGAATGACTGAATATATGGCTCACTGTGTCATTAACACATCCATTGGCTTTACAAGTAATGCATTGTGGGGAAAGTATAGCACCAATTTATGACCTGGACTCCACATTGTACAGTAAACGCCAgaaaccttttttatatatatatatatttttaatttacataaacATATTTGTTTTCAATATCCATTTAGAATGTTACAATAACTCAAAAGTGTTCATTTGTGTTATTTCCTTTAAGGCCATACAAATATGAATacttatttaatggatttactcaatatttaattttgttctgtttttatttattttgggggGCTACCTAAATGTTGCCAGGAAAACAGGTAACAGTGACCTAAACAATAAAGAATCAAAtctttattgtaaatatttagtttattagtttttgCATATTGAATTGTTGAAGGAAAGAGCTCTGAAATGCGACTTAATTGATTTTAAGAAACATGTCCGTTAAACAAGTCTTTGAGTTTGCATGGCCTTATCCTGATCTTTGTGTATATGTACAGataatataaagttttttttttttcttgtacagTATTTTGTTACATTGAAATGATATATTTGGGATTTGGGCGAATGATGCAGAGTGCTTATTAATTTCAGCAGATTAACACGCAAAGAAAATGCAATGTTggatccagaaaataaatcttgaATCGTCTACGTAGCTTGCTGGACAGATGCAAGAACGCATTCTTTAAAAAGCAGAGACCCTCCTCAACAGCTCGACGCTCAGTGATCAGCCCTGTGGTGCAAAAGGCCTTTTCTGGTTTCTCCCTGTGATCATCAAAAATACCATCGTCTATCATAAAAGGTGTGGCCCATTgatattttgcattttatagtatttatttttgtctatttattatttattaatttatttattaattactttGGCCTCCTATAATCTATCTACTacaatctatattttaataatgtcaaatacagatatttaaatataacacaaaatTCAGTAcgttttatgatttttgtttCACCTTTTTCACCGTTTCATTATATTCCTACACATTGTTTTGTCTGAGGCCTACTCTAtcattcaaacattaaataaatttacaACTGATGAATGTTCTGCGTGTGCGGTTATCTCGCGCTAAGCCGATGTGGAATCCATCTTGAAAATACCCCATGATGCATTGCTTTCAAACCAAGGAGTGTCATTCTGCTTGTGTAAATATCCAAGTCTCCAATAGACTAGATTCTTTCAAATAAGATGATTGAGGCAAGGTTTGTGATTCTGAGGCCCAATTATTTAAAACCTTTGTTTCCTTCTTAATACTGGTACTATTGTAACATGGACAGTAGCATGTATGTGCAGAATCCTGATTGGACACagtgaaatgtttataaaatagttattttcaGATAAATGTTAATTCTGGGTCTTTGTGTGAGACAATAGTGAGCCATGACCGCACTGGTCCAGGTGCAAAGGCAACTAAATGATGTTTGAATACTAATCGTAACTAATGTGGAGAATCCCAGCCTGCTaacatgagtgagtgagtgagtgagttataTCAACTTGGTTGAAGGCCAGGTTGATAAGGTGCTTTGCATCAAAAAATGCAGGCATGAATTGCACAAATTGTGCTTGTCAGTCTAGTTTATTAAGATGGTCACTGTCTTACAGCTCTTTTTTCTaagtttcattaaaaaaaaacttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241940 lncRNA downstream 1032 23255238 ~ 23255493 (-) True G178575
XR_002651467.1 lncRNA downstream 34027 23221554 ~ 23222498 (-) True LOC111195071
TU241912 lncRNA downstream 67724 23118708 ~ 23188801 (-) True G178550
TU241913 lncRNA downstream 67724 23127213 ~ 23188801 (-) False G178550
TU241860 lncRNA downstream 315992 22936526 ~ 22940533 (-) False LOC111195067
TU242041 lncRNA upstream 134881 23410614 ~ 23410877 (-) True G178660
TU242054 lncRNA upstream 192125 23467858 ~ 23475206 (-) True G178672
TU242055 lncRNA upstream 227621 23503354 ~ 23514708 (-) True G178673
TU242057 lncRNA upstream 227621 23503354 ~ 23514708 (-) False G178673
TU242080 lncRNA upstream 255261 23530994 ~ 23536703 (-) True G178686
XM_022681268.1 mRNA downstream 299323 22945161 ~ 22957202 (-) True sh2d4a
XM_022681269.1 mRNA downstream 299339 22945161 ~ 22957186 (-) False sh2d4a
XM_022681267.1 mRNA downstream 299667 22945161 ~ 22956858 (-) False sh2d4a
XM_022681266.1 mRNA downstream 316014 22936558 ~ 22940511 (-) False LOC111195067
XM_022681259.1 mRNA downstream 349151 22899476 ~ 22907374 (-) True ddx4
XM_007255253.3 mRNA upstream 135450 23411183 ~ 23453696 (-) True wrn
XM_007255249.3 mRNA upstream 239519 23515252 ~ 23521636 (-) True ubxn8
XM_022681288.1 mRNA upstream 430968 23706701 ~ 24078366 (-) False LOC103038694
XM_022681287.1 mRNA upstream 430968 23706701 ~ 24078366 (-) False LOC103038694
XM_022681289.1 mRNA upstream 430968 23706701 ~ 23937134 (-) True LOC103038694
TU241888 other downstream 299299 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 316014 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 583842 22672132 ~ 22672683 (-) True G178450
trnam-cau_39 other downstream 720026 22536428 ~ 22536499 (-) True trnam-cau_39
trnar-ccu_33 other downstream 720191 22536262 ~ 22536334 (-) True trnar-ccu_33
TU242520 other upstream 1855249 25130982 ~ 25134156 (-) True G178982
TU242660 other upstream 1929096 25204829 ~ 25207353 (-) False LOC103025094
TU243326 other upstream 4164498 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 4188306 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 4197622 27473355 ~ 27477978 (-) False ift46

Expression Profile