RNA id: XM_007255267.3


Basic Information

Item Value
RNA id XM_007255267.3
length 3294
RNA type mRNA
GC content 0.43
exon number 4
gene id fut10
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23203476 ~ 23217258 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCGGAGAGTTTTCCGAACAATGCCGCCCCCCGAGCAGGAAGTTTGGAGGCACAGTGAGAAAAATGGCCGGACTGCATCCAAACACTGCACTCTGAACTGGACACTGCCAGGAATATAAGGGTTATACAGTTAAATCCTGTCCTCTGGTgtgatatttattatttctccGCAGCTGAAGTGAATCATGAGACGCATCGCTCTGACTGTATTCATCCGCGCAGGACTGCTGACATGGCGAGACTTCTTTCTGTTAGGAGACTGTtcgctgtgtgtctctgtgggTCAGCGGCAGTTTTCCTAATCATAACTCTTCAGGTCGTAGAGGAACTGGGCCAGTTTGAGCAGAAGGCTCACAGACTCCCCCTGAAAGAAAGACAAGAGTTAACACAGATCCAGCCGGACAGCAGTTTGCTCACTGAGGACAAGATATCTGCTGCTTCAGAAGACTGGTACCCCTTTATAGTGTGGTGGTCCCCACTGACTGGTGAGCTGGGACGGCTTGGGGAGTGTGGCAGTAACAGATGTTTTTTCACCATCAATAAATCCCATCATGCTCACCCTTCGACTCACGCCTTCCTGTTTTATGGTACGGACCTTAACGTCGAGAGCCTCCCTCTTCCAAGGAAAGAGCATCATCAGTGGGCTCTGTTCCACGAAGAGTCGCCCAAGAACAACTACAAGCTCTTTCACGAGCCGGTTATCACACTTTTCAACCACACTGCCAGCTTTAGCCGCCACTCCCAACTCCCCCTGACCACCCAGCACCTGGAGAGCCTCCGAGTGCTGACCTCCCACACATACCTGCTGCCCCTCGCTCAGAAGAACCACCTGAGACACACTCTGGCTCCCGTGGTCTACGTCCAGTCCGACTGTGACCCTCCATCAGATAGAGACGTCTACGTTCAGGAGCTTATGAAGCACATCCAAGTGGACAGCTATGGGCAGTGCCTCAACAACAAGCATCTGCCCCCACACCTCAGAGACTCTACAGCTATGGAGGAACAGAGCTTTTACCAGATCCTGGCCCAGTATAAGTTCATCCTGGCTTTCGAGAATGCCATCTGTGACGACTACATTACAGAGAAACTGTGGCGGCCGCTCAAACTGGGAGTGGTTCCTGTGTACTACGGAGCCCCGAATGTGCACATGTGGCTCCCCAGTAACAGGAGTGCAATCGTGGTTGACCCCAATGAACCTCCAGAGAAACTGGCCCAGTATTTAAAGAGACTGGATAAAAACGACTGGGAGTATTTAACATATCTAGACTGGAAGATGAAGCAAGAAATCTCAAATCAGAGACTAGTTAAAGAACTGAAGGAGCGTAGCTGGGGAGTCCAGGATATCACCCAGGATAACTTCATAGATGTCTTTGAGTGCATGGTGTGTAACCGGGTCTGGGAGAACATCAACAGACAAAAAGAGGGTCTGCCTCCCCGACTGTGGCAGGCTGAAGCGGACCACCTGAAGTGCCCACCGCCGAGGCTCTTTGActtttctgcagctcctccgaACAGCACGTCTCTGCGGCGTATCTGGAGAGCGAGTTACGCTCAGTCTGAGAAGGAAGCCCGAGCGCTGAGACGGCTCGTCCTGAGGAACACTAACTTCACCCTCACACAGTTCTGGAGGGAGGTCTTCACTGACTGAATGTGCATGCTCTTgttttatagattaaaacatttGGTATAGatttaaaagtttggatacCTTAAGTGAGGTGTACACAGCTTAATGCAATCAGTGTTTAGTTTATTCAGGTTTACTGTAATGTTACTGCACAGAGATGCCTTTTGAGGTAGACTGATACAAAGCCTTGGTTACAGTTACACAGATGGCTGTGatgttctctttttctttctttctgtttcttgaAATCTGTATCAGATTGAATTTTACACAAGCTGTAGGCATGTGATATTTTGCTGGGCTGATATATCTCTACAGGAATGTGGACTATATACAATAATGTCCTGCtgcttatacagtattttagagaAAAGATAAGATATtaatcttttttctattttttgttcCTGCAATTTTCACTTTaacataatttgaaaaaaaagctGGATTTGATTCTTGGAAGTGCCCTGGATTCATGGAATACACGTTGTCTTGGTTTGGGGTATCTTGTAAACAACTTCAGTCATAAAAATAGCAGGTTTTTCAAGAGTGATTAGTCCATTGgggtttaaataatacataaataaattagggttaaataataatgttaaacatttaaactgttaaacatCTAAAGTTGTCCAGTAGAGTCTGGCAACAAGACCTATGgtagcagcagatcctttagGTTCTGTAAGTTGTAAGATAAGGCCTACAAAAGGACTGCACCAGTGAGCCTAAGATATCCATCACCACTTGGAGCATGTTTGATtggtactgaccactgcataccagAAAAAAACCCActagacctgcctgatgttttggaggTGCTCTGAACCTTCCAGTGATCCAGTCAACTGTCACAATGTGGCTCTTATGAATGTGACTCAAATTTTGACACTTGCTATTTTGTTCTGATTTTGAAACATCAGCTTCATGAACTGACTGTTCATTTGCTGCCTAATATCTAATGTACCAATCTTCTCAACAGATGTCATTGTAGATTAAGATATAAGGATATCTTTAATTTTACCGGTTAGTgtgatacattttacattttgctgaCCAGTGTACTTGCACATCATGTAATTAATTTCACTAGTATGCATACTAATACACAATTACTAAAATTTACTGTTATGACTTTCAGTATTTTAGCCTCAGTGTTCTTGTTCTTCTGTGTTAATATGTAATCTATGCATGTTGCTAACTTGATCTCAGggtaggattttttttgtttattgtgccTTCCTAGCACAACATAAAAgggctaaactctaaacacatccaaacacacacttaaccaTATGACCTTAAAACTAAAGCATTCAAATCTGTTATAATACAACCCCACTTaccaaaaatctaaaatacctCTTTTATATTCAATCATAGAAGTTAGTTGCAATTTGCCTCTAttgtagctgtttttttgttagtaCCACTAACTTTTGATGTCAAGTTCTAAATAACAGCACACATGCCCAGAGTGGGGGGCAGCAATCAGTCCAGCAAACCTGGATATTGAACCTAtaaaccttttttgtttttttaaatgctcctttgctctaaccactgagacACTGGTTTCGGTTAATGTTTCACTTTCAGCATCTGATGTTTTTGATTTTACAGCAccccaacttttttggaattggggttg

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046920 alpha-(1->3)-fucosyltransferase activity molecular_function

KEGG:

id description
K09669 FUT10; alpha-1,3-fucosyltransferase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241817 lncRNA upstream 246317 22950963 ~ 22957159 (+) True G178482
TU241809 lncRNA upstream 260127 22943126 ~ 22943349 (+) True G178477
TU241803 lncRNA upstream 261855 22935483 ~ 22941621 (+) True G178474
TU241808 lncRNA upstream 262327 22940604 ~ 22941149 (+) True G178476
TU241801 lncRNA upstream 272531 22930223 ~ 22930945 (+) True G178472
TU241944 lncRNA downstream 43313 23260571 ~ 23263280 (+) True G178578
XR_002651468.1 lncRNA downstream 57191 23274449 ~ 23348016 (+) False LOC111195072
XR_002651469.1 lncRNA downstream 57191 23274449 ~ 23338775 (+) True LOC111195072
TU241957 lncRNA downstream 116487 23333745 ~ 23347784 (+) False LOC111195072
TU241958 lncRNA downstream 116487 23333745 ~ 23335588 (+) False LOC111195072
XM_022681271.1 mRNA upstream 16252 22995089 ~ 23187224 (+) False LOC103038592
XM_022681270.1 mRNA upstream 16252 22995090 ~ 23187224 (+) True LOC103038592
XM_022681272.1 mRNA upstream 16252 23045386 ~ 23187224 (+) False LOC103038592
XM_007255272.3 mRNA upstream 16252 23060995 ~ 23187224 (+) False LOC103038592
XM_022680703.1 mRNA upstream 230471 22970422 ~ 22973005 (+) True LOC111194985
XM_022681283.1 mRNA downstream 242110 23459368 ~ 23461975 (+) True purg
XM_022680722.1 mRNA downstream 262279 23479537 ~ 23494300 (+) True LOC111188215
XM_022681284.1 mRNA downstream 276896 23494154 ~ 23497618 (+) True LOC103034079
XM_022681285.1 mRNA downstream 286049 23503307 ~ 23514711 (+) True ppp2cb
XM_007255251.3 mRNA downstream 286049 23503307 ~ 23514711 (+) False ppp2cb
TU241823 other upstream 238487 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 493919 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 657346 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 701317 22493440 ~ 22502159 (+) False LOC103022948
XR_002651470.1 other downstream 486729 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1230622 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1284616 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3696628 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 4307060 27524318 ~ 27525389 (+) False LOC103038954

Expression Profile