RNA id: XM_007255282.3


Basic Information

Item Value
RNA id XM_007255282.3
length 2587
RNA type mRNA
GC content 0.45
exon number 15
gene id slc38a9
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22908793 ~ 22928244 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTGGGCGTAGCGTTCACTACAGGTCCAGCAAGAACTGTAACCGGTGTGTGTGATCACGCTGTGGTTCCTTTTCAAAACAAGTTAGCCTGGCGAGACGAGgtgtttcttctgtttctcctaGGAGGTAATGAATGATTTTTAGGTGACGTACTGAAAGAACATGGATGAGGACTGGAAACCTCTGTTTGCCTCTATTCAAGCAGGAGAGTACTACTCAGACCCAGTAGACTCACTGGACCCCAGACAAAGAAGGCCTTTTCATGTGGAGCCCAAGAACATAGTGGAGGATTCTGCCCAGGAACGAGTGTCATCTGAGGCTTCAGCATTGAACAGCAGGGTGCATTACTATGGCCGATTGACCGCCTCTTCTGACAGACTGCTGGTTCCACCGGATCATGTGATCCCCTCACCTGAAGATATCTACATTTATAGCCCTCTTGGGACAGCATTCAAAGTTCACGGGAAAGATGGCGCTGTCAAAAACCCTAGCATTGTCACCATTTTTGCTATATGGAATACAATGATGGGGACGTCTATATTGAGCATACCATGGGGAATAAAGCAGGCAGGTTTTACCTTGGGGATCATTATTGTCATCTTAATGGGCTTACTGACCCTCTACTGCTGTTACAGAGTTCTCAAATCTACTAAATCAATACCTTACATAGATACTTCAGACTGGGAGTTTCCTGATGTATGTAAATATTACTTCGGAGCATTTGGACAGTGGTCCAGTCTGCTCTTCTCCCTGGTGTCACTGATCGGAGCAATGGTGGTCTACTGGGTTCTAATGTCCAACTTCCTGTTCAACACAGGAAAATTCATTTATAACTACGTTCACAACGTCAATATGTCTGACTCAGAGTTTGGAACAAATGGAACTGACAGAGTGGTGTGTCCAtacccagacctgaatccacaCAGAAACAGCAGCCTGGACCAGTATTCCTCCAGCAGTGACAACAGTACAGCTGTGTTTGACCACTGGTGGAGTAAAACCAACACCATCCCCTTCTACCTCATCAttctgctgctgccgctgctcaACTTCCGCTCAGCCTCCTTCTTCGCCAGGTTCACCTTCCTGGGCACCATTTCAGTAATCTACCTTATCACGTTGGTTACCATCAAAGCTGTTCGATTAGGATTCCATCTGGAGTTCCACTGGTTTCATTCCACTGAGTTTTTTGTACCAGAATTCAGATTACTGTTTCCTCAGCTGACTGGTGTTCTCACACTAGCCTTCTTCATCCACAACTGTGTCATCACCCtcatgaaaaacaacaaaaatcagGAGAACAATGTACGAGATTTGTCCTTGGCCTATCTGCTAGTAGGCCTGACTTACCTGTATGTGGGGGTCTTGATCTTTGCTGCCTTCCCATCTCCACCCCTGTCTAAGGAGTGCCTTGAACCAAATTTCCTGGATAACTTCCCCAGCAgtgatatttgggtgtttgtggCTCGGACCTTCCTGCTGTTCCAGATGACCACCGTTTACCCGCTGCTGGGTTACCTGGTCCGAGTGCAGCTGATGAGCCAGCTTTTTGGGGATCACTACCCCAGttTTCTGCATGTCTTCATGTTGAATGTCGTCATTGTAGCTTCTGGAGTACTTATGGCCAAATTTTACCCCAATATTGGTTCCATTATCCGGTACTCGGGGGCCACATGTGGGCTGGCTCTGGTCTTCGTCTTCCCCTCACTCATTCACATGGTGGCTCTGAAGCGCCGTGGCGAGTTGCGCTGGCCTTCTGCTTGCTTCCACAGCTTTCTAATTTTATTAGGCGTAGCGAATGTTCTGGGACAGTTTTTCAtgtagcatttttttgtttttgttatttttgtttgtttgttttttcatcatCTTCTTATGCAAGTTTTCTTCTGTAGCACACTCATTACTCACATGCACTCACTGTTCCTCTCTCACTAACACACTTATTCATTCAATGTTGGGAGAATGGTTCTTCTTAGTTCTAATACTGTACGGGGAATGATGCACGATATGGTCAGGAGTACTGGGACACCTGCCCTTTCAttgttatatataaaatgaagagTGGAATGGAGAGTATAAGtattgcttttgttggagtaactgtctagAGAAGGTGGCTGTGTACTAGATTTTGGAATATTCCTGTGAGGAATTGATTGCATTATGGATGAACTACACACCACCCCATgcccaacttcccaactcatctaCAAAATACTAGATGAAGCACCCATCATCATTCTAGAGAAATCAGATAAACTGCTCCTAGCTCAGTGCTGGTGGGAGGGTATTCAACCTTTAGCCCATgcatggcattaggcatggtgccaaagAGTCCCAATcaattggcaatacttctctataGGAACTAGAAAAGCTTTGTGTTTGGGCATTTGCACAAGTGTGGCTGCAATGGGTATAACATAAAATAGCTGTGCATAAAATGTGCTCATTAAGAGGAGTGTCCGCAAACCTTTAGACATTAGTATAGTTCTGATAATATACTGCAGGTAAAAGTAGTAAATGGTGTATTAAATTAAGTTCTAGGTTTGTACCATAGGTGGCACTATAacataaaaaagct

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14995 SLC38A9; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241671 lncRNA upstream 187987 22713737 ~ 22720806 (+) True G178394
TU241669 lncRNA upstream 200392 22707748 ~ 22708401 (+) True G178392
TU241655 lncRNA upstream 236963 22629911 ~ 22671830 (+) True G178381
TU241641 lncRNA upstream 303221 22604995 ~ 22605572 (+) True G178368
TU241604 lncRNA upstream 384720 22516531 ~ 22524073 (+) True G178344
TU241801 lncRNA downstream 1979 22930223 ~ 22930945 (+) True G178472
TU241803 lncRNA downstream 7239 22935483 ~ 22941621 (+) True G178474
TU241808 lncRNA downstream 12360 22940604 ~ 22941149 (+) True G178476
TU241809 lncRNA downstream 14882 22943126 ~ 22943349 (+) True G178477
TU241817 lncRNA downstream 22719 22950963 ~ 22957159 (+) True G178482
XM_022681258.1 mRNA upstream 28479 22865141 ~ 22880314 (+) True il6st
XM_007255340.3 mRNA upstream 45410 22839508 ~ 22863383 (+) True ankrd55
XM_022681261.1 mRNA upstream 380710 22519419 ~ 22528083 (+) True LOC111195066
XM_022681262.1 mRNA upstream 393208 22509888 ~ 22515585 (+) True LOC103022635
XM_015603623.2 mRNA upstream 406634 22493440 ~ 22502159 (+) False LOC103022948
XM_022680721.1 mRNA downstream 36749 22964993 ~ 22966528 (+) True LOC111194992
XM_022680703.1 mRNA downstream 42178 22970422 ~ 22973005 (+) True LOC111194985
XM_022681271.1 mRNA downstream 66845 22995089 ~ 23187224 (+) False LOC103038592
XM_022681270.1 mRNA downstream 66846 22995090 ~ 23187224 (+) True LOC103038592
XM_022681272.1 mRNA downstream 117142 23045386 ~ 23187224 (+) False LOC103038592
TU241665 other upstream 199236 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 362663 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 406634 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other upstream 406634 22493440 ~ 22502159 (+) False LOC103022948
XR_002651462.1 other upstream 417290 22486823 ~ 22491503 (+) False hnrnpdl
TU241823 other downstream 35203 22963447 ~ 22964989 (+) True G178485
XR_002651470.1 other downstream 775743 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1519636 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1573630 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3985642 26913886 ~ 26916344 (+) False rnasek

Expression Profile