RNA id: XM_015607372.2


Basic Information

Item Value
RNA id XM_015607372.2
length 4926
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC103042817
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22679197 ~ 22693932 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTACGGAAGTGGGTCCGTCCGCTTTGCGTTCCTACCACTGACCTTATGATTTGCGGGAAGGGGCAGCGGTTCTCTCCTAGCTCAGACTCTCCTACTATATGATTTCCATTCACCATGCCTGGATCTCTACCTGCTAACTATGTGGCTGCTTGGCCCAAAGATGTGGGCATCATCGCTATGGAGGTCTACATTCCCTCTCAGTATGTGGACCAGACAGAACTGGAGGAGTTTGACGGCGTCGGGGCCGGAAAGTACACCATCGGGCTCGGCCAGGCGCAAATGGGCTTTTGCTCAGATCGCGAGGACATTAACTCTCTGTGCCTGACCGTGGTGCAGCAGCTTATGGAGAGAAACTGCCTGTCGTATGACAGCGTGGGGAGACTAGAGGTGGGCACAGAGACCATCATCGACAAATCCAAGTCTGTGAAGACTGTACTAATGCAGCTGTTTGAGGAGTCGGGAAATACAGATGTGGAGGGCATCGACACAACTAATGCCTGCTATGGAGGAACTGCTGCACTTTTCAATGCAGTCAACTGGGTGGAGTCCAGCTCTTGGGATGGTCGCTATGCTCTGGTCGTGGCGGGAGATATTGCTGTGTATGCCACAGGCAGTGCCAGGCCTACCGGTGGGGCTGGAGCAGTGGCCATGTTGGTTGGGCCCAATGCCCCTCTGGCATTTGATCGAGGTCTACGAGGCACCCACATGCAGCATGCCTATGATTTCTATAAGCCCGATATGGTATCTGAATACCCCGTGGTGGATGGAAAGCTCTCCATCCAGTGCTACCTCAGTGCATTAGACAGATGCTACTCAGTCTACCGCAATAAGATTCAAGCACAATGGCAAAGAGAGGGACTTGAGAGGAATTTCAATCTGGATGAATTTGGCTACATGGTCTTCCACTCTCCTTACTGTAAACTGGTCCAGAAATCTCTGGCTCGCCTCCTGCTCAACGATTTCCTGTATCATCCCAGTCCCAACACAGAGAGCGGCCCGTTCAGTGGTCTGGAAGCCTTCAGagatgtaAAGATTGAGGACACTTATTTTGACCGTGACGTGGAGAAGGCCTTCATGAAAGCCAGTGCGGAGATGTTTGAGCAGAAAACCAAGGCTTCACTCCTCATATCCAACCAGAATGGCAATATGTATACGCCGTCTGTGTATGGCTGCCTGGCTTCAGTTCTAGCACAacatACTCCACAGCAGGTGGCAGGACAGAGAATTGGCGTGTTTTCTTATGGATCAGGATTCGCTGCAACTCTCTACTCTATTAAAGTCACACAGGATGCTACACCTGgTTCTGCGCTGGATAAACTTGTTTCCAGTCTGTCAGATCTGAAGGCTCGACTGGACTCCAGGAGGAAAGTTGCACCTGGTGTCTTTGCAGACAACATGAAGCTTAGAGAAGACACTCATCACTTAGCAAACTACATCCCCCAGGGTCCTGTGGATGAGCTCTTTCCAGGAACGTGGTACTTGACCCGTGTGGATGAGAAACACCGCAGGTATTACGCCAGACGCTCCCTTGACGAGGACAGACCACTGGAAGCAGGACTGGCTGATTCTGTAACTGCAGCAGAGcaCATCCCCAGCCCAGTAAAGAAGATGCCCCGCATCCCAGCCTCCACAGCTGCCCCTGAGGCGGTTGCCATTAGTAACGGGAACCACTAATGTTGACCTCTGTGAGGTACACATAATCACAGATGATGGTGAGGACATCAGATCTGGACAAAAGCAAGAACAAGCAGAACAAGACGAGGACCCGAGGCAACGTGTCTGCCTTGGTGGCCTTAAGGCATGTTATTGAATGATGTGAAATACACTTATCGTTTTTAAGTGCTCCTGATTAGGACTGGTTATTCAGTCTCTGTGTTTAATCAGCAGAGTTTCGGAGCGCAGGTGGGGTTTGTGTTTGGATGTAATAAGGTTTATTTGTGGTGGGCACTGTTGTGTTCACTGCTGGCACGATTTTTGATAGTAATGAGTAATGGACACAAGCTGACACACTCAACAATAATCTTTGCTGCTCAGAGCCGATGATCTATGCAGAGACAGTGGAATGATGTCATGATGCATACAAACATGTTTTCAGGCGCTTAACTCACCTTTCGTTTGCATTAAGCCAGGCTGAATGTTCTAGACACTCAGGCCAGCTGTGGAAGGGTTGAGAATAAAGGGAAGTGggcctttttacttttactttaattctgctgcttttttttttcttttagtaagCAAATGCTcatgctagtgctgctgctgcttctttcGTGTCCCATATTGCTGGCATTTCTGTAAAATTGTACGCATGCATAAGTGATGCATTTCTATATACCtcgtgtttttctttttttcttttttaaacataaattatatatatagtgtcaGAAATATCTGCTTAGGCACAGCTGAGTCAGCTAATTCAACTTAGtggaattgttttatttatataagtcAGATtccatttaatttaactttgaCATCAATTTTAAGGCCTGttttaatggttaaaaaaactaaagaacatCAAAGAATATCAGACTCGCCCagatataaagaaatataaagaaaattgtGAAGAGAATTGTCACAGCGACATTTGACTCATTAGTGTTATGTGACCAACAACAGCAGTGTACGAACACTACTTGTTTTTCGTTCacgtttgtatttttgtttgttgtcgCATTCATAATTTAGACAAATTTAGGCACTGTCAGTTAAAGCTGTCCATTGTGGTAACTGCTGGATATCTTCACgatcatgcaaaaaccttgtatctctgaGATCTTCAATGTTACTCATTCAATCATCTCATTAAGACTCAAACTGGCTTTGCCAGTGAAATACttttttcccttctaatggaaAGTTCATACAAGTGTTTGCATGACCGTGATGAGATCTGGGGGGAAAAAATAGTGGTTCAATCACACACCATTTCTAAATTTGACAATACTGTCTGAGTTTCTCTTTGTGGGGGGGTTTAAGAATAGGTTTAAGCATTACCGATAACAGAGGATGACTGAAAGGAATATTAGTTTATTCGTTAATGAAaaggaattaaattaaatgtatattggGTTGTTCCGACTTCCTTGGGACCACTAAAGCAGGGAAGATATAAGGGATAGACAAATGTATCAATATATGAAAgtatatttatgattatttaGCAGCGTAACGTTGTTCTCATGCTATGGCACGGACACGATCCACTCAAACAAAACGATAAAGATAAACAATTCAGATTTTTAGACCCCACACCAAATAGTCCAGTTTGTTTAAAGCTTCCAAACTAAATGTGGTCTGtttttgtatctgtgtgtgtaggtgCGTAAGTTTGTGTGTATACGTGATCTGTTTTTGGTCTGTCTGTTTCTGAGCCCCTTGCCTTTGGTTGTGCCAAACTGCCAAAGAGCAGATCATTTCCCGAAACCCGTCACAGCTGCAGTTGTTTAGCGAGCctaaaacagtttagtgtgccTGGCAGTGGTCTCTGCAGCACCGCATTACCGCTGAACTGCCTTTCTGTGTGCGGTGTGGGCCGAGGGGATGGTTCTGTAGGACTAGAATACTGTAAAACTTCTTAACTAAGGGCTTATAATGTATCTTTTGCCACAGACTAAGTGAGGTAAATTATCTGATGCTGCACGCAGGTTCTGATTGGTGAAACTGGATGTttttgatgatgttgatgattatgataattaggagaaagaggaggactTTTCCTCTCGTTTCCATCCGTCCATCTTACACAACAGTGATGTTAATAATGATTCATTTAAGTGGGATTGGGGATGCCTAGAATTTAGACGTGACCTCATTAGAAATGAAGCTATTAAGGGCgtgttcacacctgtagttggtttgcTCTGGTCAGAATCGGTTGAGGAGTTTCGTAAACTTGGAGCATTTTGGGTTTGGTTCGGTTCGGTTCGGTTCGTTTTTACACAGGGAATAACCCAAGTgcactaaaatgtgttttaaccaAACCATGTGACAATGTTCTCTGCTGTTATTGGTCAGTTGTATTGGTggagcaagaaaataaatacaggaagaagtgCTCTTGTTCTTCCATGTATTTCAGCGTAAATAAGCTTGTAGCAGCTGCAAAGATGAcatttgttcatagctttagtaattatctgggtaataaatcaggttaaattGCATCTGAATAGCATTTTAGCTTAAACTCACTAAGTACAGCTAATAGTTGGGTCTGATCTCCTCACCACAAACGAACTGTGATTGGACTAAGACCACCTCCTCTTCTAGTTCTCAATGCAATTCCTGtgttcacacctgcccaaacgAATCGCATCAAGAGTTAAAACAAACCAGGATCCAGGTTAAGCAAACTAAAAAGTGCAGGTATGAAAACGTCAGCCTTCCCTCAAACCCTGTACTGGGAGCACTTGCAATTGCTGTGGTCATTTGCATTCCCATACAAAAGTCTTTTAATACCAAGCGGTTAGATTGTTGAGAGAATCACCTGCAATGGTGACGCGAACTGCTCATCTTTAAAAAGCCTTATTCTAAGCATGTtgagaaaacagaaacagaggatGGAATTCTGAATAATATAATGTACAggtaattatatatacatatattttttttttcttttctttttttttttttttttttttgcagccagGACAAGTCGGCTCTAAGGTTTTAACTTGAAACAGCTAATGTTTACACAAAGTTTCTCTGAGATCAGTCAGTTATACCAATGTTTGGTGAGTAATGTACAATACTAactgtaaaattatttatatttgtagatGTAAAGAGGAATCTGTGTCTGATCAGGCTTAACTTTTGTAGAAAGCAAGCTGTATAAAAGAGGTGTAATATGTAAGAATGTATAAAGAGATGAACTgagaaataaatctgttcatGTATA

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0004421 hydroxymethylglutaryl-CoA synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241745 lncRNA downstream 131217 22511049 ~ 22547980 (-) True G178436
TU241753 lncRNA downstream 152286 22519464 ~ 22526911 (-) True G178441
TU241750 lncRNA downstream 155588 22515661 ~ 22523609 (-) True G178440
TU241751 lncRNA downstream 155588 22515661 ~ 22523609 (-) False G178440
TU241752 lncRNA downstream 155588 22515661 ~ 22523609 (-) False G178440
TU241772 lncRNA upstream 57068 22749513 ~ 22750079 (-) True G178452
TU241851 lncRNA upstream 177713 22870158 ~ 22880309 (-) True G178505
TU241872 lncRNA upstream 216347 22908792 ~ 22913269 (-) True G178521
TU241883 lncRNA upstream 237664 22930109 ~ 22930968 (-) True G178528
TU241859 lncRNA upstream 243061 22935506 ~ 22940533 (-) False LOC111195067
XM_022681255.1 mRNA downstream 7346 22581421 ~ 22671851 (-) False LOC103043437
XM_015607366.2 mRNA upstream 3864 22696309 ~ 22764412 (-) True map3k1
XM_015607367.2 mRNA upstream 3864 22696309 ~ 22725149 (-) False map3k1
XM_022681257.1 mRNA upstream 3864 22696309 ~ 22724142 (-) False map3k1
XM_007255278.3 mRNA upstream 188679 22881124 ~ 22897545 (-) True LOC103040684
XM_022681259.1 mRNA upstream 207031 22899476 ~ 22907374 (-) True ddx4
TU241770 other downstream 6514 22672132 ~ 22672683 (-) True G178450
trnam-cau_39 other downstream 142698 22536428 ~ 22536499 (-) True trnam-cau_39
trnar-ccu_33 other downstream 142863 22536262 ~ 22536334 (-) True trnar-ccu_33
trnam-cau_38 other downstream 142942 22536184 ~ 22536255 (-) True trnam-cau_38
trnam-cau_37 other downstream 143698 22535428 ~ 22535499 (-) True trnam-cau_37
XR_002651463.1 other upstream 243045 22935490 ~ 22940511 (-) False LOC111195067
TU241888 other upstream 260241 22952686 ~ 22957226 (-) False sh2d4a
TU242520 other upstream 2438537 25130982 ~ 25134156 (-) True G178982
TU242660 other upstream 2512384 25204829 ~ 25207353 (-) False LOC103025094
TU243326 other upstream 4747786 27440231 ~ 27443316 (-) True G179569

Expression Profile