RNA id: XM_022681253.1


Basic Information

Item Value
RNA id XM_022681253.1
length 9421
RNA type mRNA
GC content 0.52
exon number 59
gene id LOC103043437
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22581421 ~ 22671851 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgctgctgctgcagggtGGAGCTTTGACGCTGCCTCAACCAGACAaacggaggcaaggaaaaaacCCAGAATCTGACATTTTACCAACATTTCTGGAACTTACACCACTTTGACTGGGGAACGGGACTATATTTACACCGACTGTAGTCCGAAGGTGGACGGCCGGAGGTCGAGGAAAGCGGGGAGATACATTAGAAGACCCCAGACAGCCACATCCCTCTGGGTGGCCCACTCCCATCTGTAGAAGATTCCATCAGgtGTAGCAGTGACGTAGGCACAGAAGCGCAGACATGGTGGCGCTGTCACTAAAGATCGGCGTGGGGAATGTGGTGAAAACTATGCAGTTTGAGCCCTCCACCATGGTGTATGACGCTTGTCGAATCATCAGGGAGAGAGTTCCAGAAGCACAGCTCGGCCAGCCCAACGATTATGGCCTGTTCCTGTCAGATGAAGACCCAAAGAAAGGCATTTGGCTGGAAGCAGGGAAAGCCTTGGACTACTACATGCTGAGAAATGGGGACACACTCGACTACAAGAAGAAACAGAGGCCGCTCAAGATCCGCATGTTGGATGGGACGGTGAAAACCGTCATGGTGGACGACTCTAAAATTGTCAGTGACATGCTCATGACCATTTGTGCCAGAATAGGCATCACAAACTATGATGAGTATTCGTTGGTGCGAGATATTGGTgaagagaagaaggaggagacAACAGGAACACTGAAGAGAGACAAAACCCTTCTGAGGGATGACAAAAAGATGGAGAAACTTAAGCAGAAGCTTCAcactgatgatgagtTAAACTGGTTGGATCATGGACGGACGCTTCGTGAGCAGGGGGTGGAGGAGACAGAGATGTTGCTCCTCAGGAGAAAGTTCTTCTACTCTGACCAGAATGTGGACTCCAGAGATCCAGTTCAGCTTAATCTACTATATGTACAGGCTCGAGATGATATTCTGAATGGATCTCACCCTGTGTCCTTTGACAAGGCTTGCGAGTTCGCCGGTTATCAGTGCCAGATCCAGTTCGGTGACCACAATGAATCTAAACACAAACCAGGATTCCTTGATTTGAAAGAATTCCTGCCCAAAGAGTACATCAAGAACAAAGGCGAGAAAAAGATCTTTCAGGCACACAAAAACTGCCAAAATATGACTGAGATTGAGGCCAAAGTCAGCTATGTCAAGCTGGCCCGATCTCTCAAAACCTATGGAGTGTCCTTCTTCCTAgtaaagGAGAAAATGAAGGGCAAGAACAAGCTGGTCCCTCGCCTGCTGGGCATCACCAAGGAGAGCGTGATGAGAGTGGACGAGAAGACCAAGGAGGTGATGCAAGAGTGGAGCCTGACAAACATCAAGCGTTGGGCTGCTTCCCCAAAGAGCTTCACTCTGGATTTTGGAGATTATCAGGATGGCTACTACTCAGTCCAGACCACTGAAGGAGAGCAGATTGCACAGCTGATTGCTGGCTACATTGACATCATCCTTAAAAAGAAAAAGAGCAAAGACCACTTTGGCCTAGAAGGAGACGAGGAATCGACCATGCTGGAAGATTCTGTTTCACCTAAAAAGTCAACAGtgatgcagcagcagttcaacaAGGTGGGGAAGGTGGAGACAGGCTCTGTGGCTATGCCGGTCATCATGCGTTCAGGTGCTGGTGGTCAAGGAAGCTTCCAGATGGGATCCATACCTCAGGCCAAGCAGCAGATCACTAGTGGCCAGATGCACACGGGACACATGCCCCCATTGACTTCAGCCCAGCAGGCCCTGACAGGCACCATTAACTCCAGTATGCAGGCAGTGCAGGCTGCTCAGGCCTCTCTGGATGACTTTGATGCCCTGCCTCCATTGGGCACTGATGCGGCTTCTCAAGCCTGGAGGAAGAACAAAATGGATGAGTCCAAGCATGAGATTCACTCTCAGGTGGATGCTATCACTGCAGGAACAGCATCTATGGTCAATCTTACTGCAGgTGATCCAGCAGAGACAGACTACACGGCTGTGGGCTGTGCAGTGACCACAATTTCCTCCAACCTGACGGAGATGTCTAAGGGCGTGAAGCTGCTGGCTGCTCTGATGGAGGACGAGGGTGGAACTGGCCAGCAGCTCCTGGGTGCTGCCCGGAACCTGGCCTGCGCCGTGTCGGACATGTTGAAGACCGCTCAGCCCGCCAGCACTGAGCCTCGTCAGAACCTTTTGCAGGCTGCAGGTAATGTGGGCCAGGCCAGTGGAGAATTGCTGCAGCAGATTGGAGAAAGTGACGCTGATCAACAGTTCCAGTCTTTAGGCAGAGGATCGTTCAGACACACAAGACGGATTCACCATTATAGTCAAATGATGGACATGCTGATGAAGCTAGCTAAGGCAGTAGCTaatgcagcagcagctctggtTCTAAAGGCAAAGAACGTGGCTCAGAAAACAGAAGACTCAGCCCAGCAGAACCGAGTCATTGCAGCTGCAACACAGTGCGCCCTCTCCACCTCCCAGCTGGTGGCCTGCACACGGGTGGTGGCTCCTACCATCAGCTCCCCGGTGTGTCAAGAGCAGCTGATAGAGGCAGGGAAACTGGTGGCTAAATCTGTGGAAGGCTGTGTGGAGGCGTCCCAGGGTGCTACCGGTGACGAGCACCTGTTGAAGCAAGTGGGTGCGGCCGCTACAGGTGTTACCCAGGCCCTGAATGAGCTCCTGCAGCACATTAAGCAGTACGCCAGTGGGGGCCAGCCAATTGGCCGCCACGGAGAAGCTACTGACCGCATCTTGGATGTCACGGAGAACATCTTCAGCTCCATGGGAGATGCAGGTGAGATGGTGCGACAGGCGAGGATCCTGGCCCAGGCCACCTCTGACCTGGTCAATGCCATCAAGGCCGATGCTGAGGGAGAGACGGACCTCGAGAACTCTCGCAAGCTGCTGTCCGCCGCAAAGCTTCTGGCTGACGCTACTGCCAGGATGGTGGAGGCTGCCAAGGGTGCTGCCGCAAACCCGGACAGTGAGGAGCAACAGCAGAAGTTGCGTGAAGCAGCCGAGGGCCTGCGCATGGCTACCAATGCTGCAGCACAGAATGCCATCAAAAAGAGACTGGTCAACAAGCTGGAGAATGCTGCAAAGCAGGCTGCAGCAGCCGCTACTCAGACCATTGCCGCCGCCCAGCATGCAGCATCATCCAATAAGAACCCAGCAGCCCAACAACAGCTTGTTCAGAGCTGCAAGGTTGTGGCAGACCAGATCCCTCAGCTGGTGCAGGGAGTAAGAGGCAGCCAGGCCCAGCCTGATAGTCCCAGTGCCCAACTTGCCCTCATCGGTTCCAGCCAAAATTTCCTGCAGCCTGGAGCCAAGATGGTGACTGCTGCCAAAGCTACAGTACCTACTATCAGCGACCAGGCGTCTGCCATGCAGCTCAGCCAGTGTGCCAAGAACCTGGCCAGTGCTTTGGCTGAACTTCGCACCGCTGCTCAGAAGGCCCAGGAGGCATGTGGTCCTCTGGAGATCGATAATGCTCTGACCGTGGTCCGGGGTCTGGAGAGGGATATACAGGAGGCTAAAGCTGCAGCAGCTGAAGGGAAACTCAGGCCTCTTCCTGGGGAAACGctGGAGAAGTGCTCTCAGGACCTGGGCTCCAACACCAAAGCAGTGAGCTCTGCAGTTGCCCAGTTGCTGAGTGAAGCTGCACAGGGCAATGAGAACTATACAGGCCTGGCTGCGAGGGACGTGGCTCAGGCCCTTCGCTCTCTGGCTGCTGCCGCTCGCGGAGTGGCCGCCACCACAGAAGACCCGCAGGCCCGCAATGCCATGCTGGACTGCACCGGAGACGTCATGGACAAGTCAGCAAACCTGATTGAAGAGACCAAGAGAGCCGTCGCCAAACCAGGAGACCCAGACTGTCAGCAGCGCCTGGCTCAGgtgGCCAAGGCTTTGTCCCAGGCCCTGAATCGATCTGTGAACTGCCTCCCTGGACAAAGAGATGTGGATAATGCTATTAGGACTGTGGGAGAGGCCAGCAAGAAGCTCCTCTCTGATCAGTTTCCCGCCAGCGGGAAGAGTTTCCAGGAGGCCCAGGCAGGCCTGAACCAAGCAGCTGCCGGTCTCAACCAGTCGGCCAACGAGTTGGTGCAGGCATCTCGTGGCACAACACAGGACCTGGCCAAGGCCTCGGGCAAGTTCGGCAAAGACTTCAGCCACTTCTTGGAGGCTGGAGTGGACATGGCTGGTCAATCACAGtCTAAAGAAGACCAGACCCAGGTGGTAACCAACCTGAAGACCATCTCCATGTCATCTAGCAAGCTGCTGCTGGCAGCCAAGGCTCTGTCCACTGATCCAAATTCCCCCAACCTGAAGAATCAGCTGGCTGCTGCAGCACGTGCCGTGACTGACAGCATCAACCAGCTGATCACCATGTGTACCCAGCAGGCCCCGGGACAGAAGGAGTGTGACAACGCACTTAGGGAGCTTGAGACTGTGCGGGGCATGCTGGAGAATCCCACTGAGGCAGTGAATGACCTGGGCTACTTCGACTGCATCGACAGCGTGATGGAGAACTCAAAGGTTTTGGGTGAAGCTATGGCTGGTATCTCCCACAACGCAAAGAACAGTAACCTGCCTGAGTTTGGGGACGCAGTCAGCTCAGCCTCCAAAGCCCTCTGTGGCCTTACTGAAGCCGCCACCCAGGGTGCCTATCTGGTTGGGGTTTCTGATCCAAACAGCCACGCTGGGCAGAAGGGCCTGGTGGATCCAGCTCAGTTTGCCAAAGCCAAACAGTCCATCCAGATGGCCTGCCAGAACCTGGTGGATCCAGCCTGCACACAGTCCCAGGTCCTCTCTGCTGCCACAATTGTTGCCAAACACACCTCCGCCCTCTGCAACGCCTGCCGCCTTGCCTCCTCCAAAACATCCAACCCTGTTgctaagagacagtttgtccaGAGTGCCAAAGAGGTGGCGAACAGCACAGCCAACCTTGTCAAGTCCATCAAAGCCCTGGATGGAGCCTTTAACCAGGAGAACAGGCAGAAATGTAAGGCCGCGACAGGACCGCTAATTGAGGCTGTGGACAACCTCACAGCTTTCGCCTCCAACCCAGAGTTTGCCAGCGTGCCTGCACAGATCAGCCCAGAGGGCCTGGCTGCCATGGAGCCCATAGTCGCAGCAGCTAAAACTATGCTGGAGAGTTCGACAGGCATGATTCAGACGGCTCGCTCGCTGGCCGTCAACCCCAAAGACCCACCCAAGTGGTCAGTGCTTGCCGGCCACTCCAGGACTGTTTCAGACTCCATCAAGAAATTGATCACCAACATGAGAGATAAAGCCCCAGGCCAGAGGGAATGTGACGAAGCCATTGAGGTTCTTAATAACTGCATCCGTGAGGTGGACCAGGCCTCTCTTGCTGCCATCAGCCAGCAGCTCACACCTAGAGATGACATTTCGCACGAGGCTCTGCATGAGCAGATGGCAGCCTCAGTACAGGAGATCAGCCACTTAATCGATCCAGTGGCCATTGCAGCCCGCTCTGATGCCTCCCAGCTGGGACACAAGGTGTCTCAGATGGCCAGCTACTTCGAGCCCCTCATAATGGCGGCCATTGGAACAGCCTCAAAGATCTTAAACAGCCAGCAGCAGATGAGTGTGCTGGACCAGACCAAGACTCTAGCGGAATCAGCCTTACAAATTCTTTACACAGCCAAAGAAGCAGGAGGAAACCCGAAGGCGGCCCACACCCAGGAGGCTCTGGAGGAAGCTGTACAGATGATGAAGGAGGCAGTGGACGACCTGGGCGGTACACTGACCGAAGCAGCCGGCGCAGCAGGAGCTGTGGGTGGCATGGTTGATACCATCACTCAGGCCATCAACAGGATGGAGGACCAGGCAGTGGAGCCTGAGGGAAGCTTTGTGGATTACCAGACTACTATGGTGAAGACGGCAAAGGCCATCGCTGTCACCGTGCAGGAAATGGTTACAAAATCAAACACCAACCCAGATGAACTGGGAGGACTGGCCAATCAGCTGACCAACGAGTTCGGAGACCTGGCATCAGAGGCTAAATGCGCCGTCATTACTGCCGAAAACGATGAGATCGGATCTCACATTAAGAAACAGGTGACTGAGCTGGGCTACAGCTGCACTGGATTGGTCACAAAGGCAGGAGCACTGCAGTGCAGTCCCAACGATTCCATCACCAAGAAAGAACTTATTGACAGTGCCCGCAAGGTTTCAGAGAAAgtGTCTCATGTGTTGGCAGCCCTGCAGGCCGGTAACCGTGGCACTCAGGCATGTATCACAGCTGCCAGTGCTGTGGCTGGAATCATCGCTGATCTCGACACCACCATCATGTTCGCTACAGCGGGCACACTTAACCGAGAGAATGCTGAAACCTTTGCTGACCACAGGGAACACATTCTGAAGACGGCCAAAGTGCTTGTGGAGGACACCAAACTTCTGGTGTCTGGAGCAGGAGCCAGCCAGGAGAAACTGGCACAGGCAGCCCAATCCTCTGTCAACACCATCACCAAACTTGCCGACGTTGTCAAGCTTGGCGCCGCCAGCTTGGGCTCTGAGGACCCTGAGACACAGGTCGTTCTGATTAATGCAGTCAAAGATGTGGCCAAAGCTTTGGGTGACCTCATCAGAGCCACCAAGGCAGCAGCCGGCAAACCTCATGATGACCCTGCCATGCTGCAGCTGAAGAACTCTGCCAAGGTGATGGTTACGAACGTTACATCCCTGCTGAAGACTGTGAAGGCGGTGGAGGATGAGGCCACTAAAGGCACCCGGGCACTGGAGGCCACCATCGAACACATCAAACAAGAGCTGGCTGTGTTTAGCAGTGCAGACCCTCCTCCAAAGACTGCCACTCCCGAGGAGTTTATCCGCATGACCAAAGGCATCACTCTGGCCACAGCGAAGGCAGTGGCTGCTGGGAACTCGTGTCGTCAGGAGGATGTCATTGCAACGGCCAATCTGAGCAGAAGAGCCATCGCAGATATGCTGCATTCCTGCAAGcaaGCAGCATACCACCCAGAGGTGAGCAACGAGGTTCGGACGCGTGCTCTGCGCTTTGGGAAGGAGTGCGCCCATGGCTACCTGGGTCTCCTGGAGCATGTGCTTGTGCCGATCATCCAAAAGCCAACTCACGATCTGAAGCAGCAGCTGGCTAGCTTTTCCAAGCGGGTGGCCGGCTCCGTCACTGAGCTCATCCAGGCAGCTGAGGCCATGAAAGGCACTGAATGGGTGGATCCGGAGGACCCCACTGTCATCGCCGAGAACGAGCTGTTGGGTGCTGCTGCCGCTATCGAAGCTGCCGCCAAGAAACTGGAGCAGCTGAAACCACGAGCCAAACCCAAGGAGGCTGACGAGAGCCTGAACTTTGAGGAGCAGATTTTGGAGGCAGCCAAGTCCATCGCTGCAGCTACCAGCGCACTGGTGAAGGCTGCATCTGCGGCACAGAGAGAACTGGTGGCCCAGGGCAAGGTCGGGGCCATTCCAGCAAATGCAGTGGATGACGGACAGTGGTCTCAAGGTCTCATTTCAGCGgCCCGTATGGTTGCTGCAGCCACCAATAACTTGTGTGAAGCGGCTAATTCTGCAGTGCAGGGTCACGCTAGTGAGGAGAAACTCATCTCCTCAGCTAAACAGGTGGCTGCTTCTACTGCCCAGCTCCTCGTGGCGTGCAAGGTTAAGGCTGACCAGGACTCGCAAACCATGAAGAGACTGCAGGCTGCTGGCAATGCTGTGAAGAAGGCTTCAGATAACCTGGTGAAGGCGGCGCAGAAGGCTGCTTTCGAAGCCCAGGATGACCAGGCTGTGATGGTGAAGAGCAAGATGGTGGGCGGCATTGCTCAGATCATCGCAGCTCAGGAGGAGATGctgaggaaggagagagagctggaggaggCCAGGAGGAAGCTGGCTCAGATCCGGCAGCAGCAGTACAAGTTCCTACCCTCAGAGCTGAGGGAGGACGGCCAGGAGCAGTGAGGGGCAGCGGACCCCctccacacaatcacacacagagcaagcacacacacacacaagccaacCACTCAGGGCTGCTGGGCCTGAGCGCTTCTTCTATTCACAAGTTTTGCTGCAATCACAGGGCTCGCAAGCTTGCAGGAGCAACATTCGGGCTAATTAATTAAAGACATGCTATGGGTAAAAATTGAGTAACGTATCAGGATGTctattttaagttgtttatttctttgtttatttgtcccTTAAATGAACAGCCATTAtgccagctgtttttttttttttttcttctttttttcttttcatattttttgcacagtGTAAGCAGACAACTGCGCTTTTTAATAGGGCAATGTGATTGATTACGTTAGTGGTAGATTCTTTAGATTTAGTTAGACATAATTTAGGATGCATGGGTGCTTTCTGCAGCTACACTTGTTTAATTTCTCAGTACTCATTTCACACACCTCCCACCAGCTGATGGTTGACCTTTGGGTGTTGAACAATAGTATTTTTGTGAGCTGAATGACTAGATGCAAAGAGGTTTATGGTTAATGGATTATGGTTTCTGGGTTAGGTGCTTCAACTAACCACGCCATAAGGGTTTATACCCCGGATTGACCAAAGCatgagagtaaaagagaaactTCTACAGCATCAATGAACAACGGGGAGGTCGGGGagattttttaaacagtgtttgtaACGTTTCCAAAGAAGACGTGGTTGGTCTGAATGTGTAGGTTGGATGGGCCTTCAGGTCAGCCTCCTCCTGGTCATTTGAACCAGGCACAGTCgactgcatattttattatggCAATTGGACCATGGGTGCAATGATTAACTTTGCGATGAAACAATTCATAGAGagaaaacatatcattttttaaaaagaaaagaataataaagctacgaaaaatgttacaaatggtATCTTCTATTAAATTTATATGTTAATACATGTTTGtcagtgttttgttgtttgtatGAGCAGTTAAGCCTCCAGGCGTTTCTGTCAGATCTTTGTTGTGGAGTATAAAAGCcatattttttcacatattttgtttctaatCATACAAATGATTGATCATTTTGGTGCTACAGTATGTTTGAGTTCCACATTGACATTATCTGATAGCATCAAAttgtaacagtagattaaaaGGGTTAGTACAGGTAAAGTTGTGGCATTTGCAGAATGAATTAAGAACATTTTGATTTTGATGACATGATGAAATTTTTCTGAGTGCTTTGTATCATCAATAATGCCACAATAAGTGAAACAGCCAGACATGAGCATAACAGTTATGTTGCATGCAGCGCATTTTAAAGTGCCTCCATATGTCTTTCATAACTGTGTAAACATAACTGTTAACTTTTCCCATTTTAAGTGCACTTAGTTCTTTGTCTAACTTAAATCATATAAATTCACTCTTTTCCAAAGACA

Function

GO:

id name namespace
GO:0007016 obsolete cytoskeletal anchoring at plasma membrane biological_process
GO:0007155 cell adhesion biological_process
GO:0001726 ruffle cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005158 insulin receptor binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241745 lncRNA downstream 33441 22511049 ~ 22547980 (-) True G178436
TU241753 lncRNA downstream 54510 22519464 ~ 22526911 (-) True G178441
TU241750 lncRNA downstream 57812 22515661 ~ 22523609 (-) True G178440
TU241751 lncRNA downstream 57812 22515661 ~ 22523609 (-) False G178440
TU241752 lncRNA downstream 57812 22515661 ~ 22523609 (-) False G178440
TU241772 lncRNA upstream 77662 22749513 ~ 22750079 (-) True G178452
TU241851 lncRNA upstream 198307 22870158 ~ 22880309 (-) True G178505
TU241872 lncRNA upstream 236941 22908792 ~ 22913269 (-) True G178521
TU241883 lncRNA upstream 258258 22930109 ~ 22930968 (-) True G178528
TU241859 lncRNA upstream 263655 22935506 ~ 22940533 (-) False LOC111195067
XM_007255294.3 mRNA downstream 2990 22541964 ~ 22578431 (-) False LOC103044350
XM_007255292.3 mRNA downstream 2992 22541964 ~ 22578429 (-) False LOC103044350
XM_007255293.3 mRNA downstream 2994 22546510 ~ 22578427 (-) False LOC103044350
XM_007255291.3 mRNA downstream 2996 22546510 ~ 22578425 (-) False LOC103044350
XM_007255298.3 mRNA downstream 19928 22541964 ~ 22561493 (-) True LOC103044350
XM_007255286.3 mRNA upstream 7346 22679197 ~ 22693932 (-) True LOC103042817
XM_015607372.2 mRNA upstream 7346 22679197 ~ 22692445 (-) False LOC103042817
XM_007255285.3 mRNA upstream 7346 22679197 ~ 22692441 (-) False LOC103042817
XM_022681260.1 mRNA upstream 10598 22682449 ~ 22692461 (-) False LOC103042817
XM_015607366.2 mRNA upstream 24458 22696309 ~ 22764412 (-) True map3k1
trnam-cau_39 other downstream 44922 22536428 ~ 22536499 (-) True trnam-cau_39
trnar-ccu_33 other downstream 45087 22536262 ~ 22536334 (-) True trnar-ccu_33
trnam-cau_38 other downstream 45166 22536184 ~ 22536255 (-) True trnam-cau_38
trnam-cau_37 other downstream 45922 22535428 ~ 22535499 (-) True trnam-cau_37
trnam-cau_36 other downstream 47701 22533649 ~ 22533720 (-) True trnam-cau_36
TU241770 other upstream 281 22672132 ~ 22672683 (-) True G178450
XR_002651463.1 other upstream 263639 22935490 ~ 22940511 (-) False LOC111195067
TU241888 other upstream 280835 22952686 ~ 22957226 (-) False sh2d4a
TU242520 other upstream 2459131 25130982 ~ 25134156 (-) True G178982
TU242660 other upstream 2532978 25204829 ~ 25207353 (-) False LOC103025094

Expression Profile