RNA id: XM_007255296.3


Basic Information

Item Value
RNA id XM_007255296.3
length 2231
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC103044350
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22541964 ~ 22578431 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAAACGTGAGTGGCCTGTGACTCGTGACGTCATGTCAGATAAGAAGGGGGCGGAGTCTGGGGGCGCCTGAGAGGGCAACTTTTCTCTACAGGGCAGTTTATCCAGCTATAGTGTGGGAACGGGGCAACTAGCagactacagagagagagagagagtgcacagagAGAATAACGCCTAGCTTATAAACCGGGAGCTGCTGCAGGACATGCGTTTAAATTTTAGAGTGAAGGAGTCGGatctttagtccaggtctgcaGCAGGGGGTCGGGGTGAGGTTGTAGTGCAGTCTGAGGGTCTGTATTAAAGATAAAGCTGGTGATTAGATTCGGTCACTTGTTTATAATGGCTGGAATAACGTCTATCGAAGCCGTGAAGCGGAAAATCCAGTCTCTGCAGCAGCAGGCCGATGAGGCGGAGGACCGGGCTGAGGCGCTGCAGAGGGAGATGGACGCGGAGAGGCACGCCAGGGAGCGGGCAGAGGCAGAGGTGGCCTCCCTGAACAGACGTATCCAGCTGGTTGAGGAAGAGTTGGACAGAGCCCAGGAGAGATTGGCCACCGCACTTCAGAAACTCGAGGAAGCAGAGAAAGCTGCAGATGAGAGCgagagAGGAATGAAGGTCATAGAGAACAGAGCGACAAAAGATGAGGAGAAGATGGAGCTCCAGGAGATGCAGCTGAAGGAGGCCAAACACATCGCTGAAGAGGCTGACCGCAAATATGAGGAGGTGGCCCGTAAGCTGGTCATCCTTGAGGGTGATTTGGAGCGTTCTGAAGAGCGTGCCGAGGTGGCTGAGGCCAAATCTGGTGACCTTGAGGAAGAGTTGAAAAATGTCACCAACAACTTGAAGTCTTTGGAGGCCCAGGCAGAAAAGTACTCCACAAAGGAAGACAAATATGAAGAGGAAATCAAAGTGCTCACTGAGAAACTGAAAGAGGCTGAGACTCGTGCTGAGTTCGCAGAGAGGTCTGTGGCTAAGCTGGAGAAGACCATTGATGATTTGGAAGAGAAACTAGCCCAGgctaaagaggagaacctaggCATCCACCAAGTGCTGGACCAGACTCTAATGGAGCTGAACAATTTATAAAGCAAGAACGCTGCGTCACAAACAAGAGTCTTACACGGCATAGAGCTTTCCAATGAAGCCCAAAGCACCTCTGCCTATGTGCACACATCCCTCACAGGGGTAAGGTCTTAATAGCTGCAGTTTTATAAACAATGATGTCCAGAAATTACACTCTGCCACTTAATTCTCGCAGATTGATGTCCCGTGAAAAGTTTTTTAGCTACCAGTCCAATAAGAGGCTTTATCTGTACTTGTAGAAAATCAGTAACACATCCTTTACTAGTGTAGACTTGAAGTAGGTTCATTACAGCAGCCTAACCAGTATGTGACCAAAGTTAATTTGCATCTTTTTACTAACAAGTGTTGTATTCAGGGAGCTATTAGCTCTTTCATGTTGAAGAAGAATGCTTTAATAACTGGTTAACTGTTCCAACCCAAGCGCTTTTAACCATTCCAAAGTTTTATGAGAACAAAATTTatccaaaccttttttttaaatgtatttttaatataacatttaatatgGACTGATTTCCATGTGTGTAAATTAAGCACAGAATGTTTTCTCCTAATTAACACTTAAAACAGAAGGCTCTAGGTCTGTTTTAGGCACTTAAAGAAAAGATtatctaattttcttaattaaatagtACTTCCTGGTGATCACATCTGATGTGTGATTGATGATTGACACAAATATTGCGATTCTGTGCTTCTTTACAAATGTGAAGTTGATCCAGTGATGATTTCTACTCCAAAAATGACTGCAATGGCCAAAGTATCATGTTGATCCACTATCAGATCATTTTCCACCTCAAATGAAGTTGACTCCTGAAtgtgatttgtgtttttgtgtattttactgTGAGATGTTTGAATGAAGTTTCAGAAAACggttatttttttctcactcattttttttccctttacatttttattaaatttggtATTAAAGGAATCaggaaaacaaaatgttttacaataaacgtttttttatgtaaattgaaAGATGGCTTTTACTGTATTCTAAACGAAGAAATTTGATGAATGAATGTCTCATCAACAAATCCTTAATTATTGATTacagcctgtttttaatgcatcacCTGTCTATGCAGTTGTGTAAGCTCTTTGTTAAAGATGATTAAAATGTTGAATACAA

Function

GO:

id name namespace
GO:0005865 striated muscle thin filament cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241753 lncRNA downstream 15053 22519464 ~ 22526911 (-) True G178441
TU241750 lncRNA downstream 18355 22515661 ~ 22523609 (-) True G178440
TU241751 lncRNA downstream 18355 22515661 ~ 22523609 (-) False G178440
TU241752 lncRNA downstream 18355 22515661 ~ 22523609 (-) False G178440
TU241721 lncRNA downstream 42717 22493456 ~ 22499247 (-) True G178417
TU241772 lncRNA upstream 188022 22749513 ~ 22750079 (-) True G178452
TU241851 lncRNA upstream 308667 22870158 ~ 22880309 (-) True G178505
TU241872 lncRNA upstream 347301 22908792 ~ 22913269 (-) True G178521
TU241883 lncRNA upstream 368618 22930109 ~ 22930968 (-) True G178528
TU241859 lncRNA upstream 374015 22935506 ~ 22940533 (-) False LOC111195067
XM_022681265.1 mRNA downstream 32181 22501469 ~ 22509783 (-) False LOC103023660
XM_007241054.3 mRNA downstream 35421 22501454 ~ 22506543 (-) False LOC103023660
XM_007241058.3 mRNA downstream 57195 22478713 ~ 22484769 (-) True enoph1
XM_022681249.1 mRNA downstream 165032 22343456 ~ 22376932 (-) True snx30
XM_007254081.3 mRNA downstream 503027 21974507 ~ 22038937 (-) True plppr1
XM_022681256.1 mRNA upstream 19930 22581421 ~ 22671851 (-) False LOC103043437
XM_022681255.1 mRNA upstream 19930 22581421 ~ 22671851 (-) False LOC103043437
XM_022681254.1 mRNA upstream 19930 22581421 ~ 22671851 (-) False LOC103043437
XM_022681252.1 mRNA upstream 19930 22581421 ~ 22671851 (-) False LOC103043437
XM_022681253.1 mRNA upstream 19930 22581421 ~ 22671851 (-) False LOC103043437
trnam-cau_39 other downstream 5465 22536428 ~ 22536499 (-) True trnam-cau_39
trnar-ccu_33 other downstream 5630 22536262 ~ 22536334 (-) True trnar-ccu_33
trnam-cau_38 other downstream 5709 22536184 ~ 22536255 (-) True trnam-cau_38
trnam-cau_37 other downstream 6465 22535428 ~ 22535499 (-) True trnam-cau_37
trnam-cau_36 other downstream 8244 22533649 ~ 22533720 (-) True trnam-cau_36
TU241770 other upstream 110641 22672132 ~ 22672683 (-) True G178450
XR_002651463.1 other upstream 373999 22935490 ~ 22940511 (-) False LOC111195067
TU241888 other upstream 391195 22952686 ~ 22957226 (-) False sh2d4a
TU242520 other upstream 2569491 25130982 ~ 25134156 (-) True G178982
TU242660 other upstream 2643338 25204829 ~ 25207353 (-) False LOC103025094

Expression Profile