RNA id: XM_007259441.3


Basic Information

Item Value
RNA id XM_007259441.3
length 3428
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC103043274
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14263394 ~ 14281729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGTTTTTGTgactctgtgctggagaaagtGCTGCTGAGGATGCTGTAGCATGGTTCTGACACACACAGGCTGGTTTAGTGCTGCAACATGTGTGGGATCGTCAGTGCCTGGTTATTCCTGGTGGTCTGCAGCCTCGCCAGAGGACACAACACTTTGTATGAAGGCTATGCCCTCTCCGGGTCCAGTTACCACCTCTGCACTGGGCAGGACTCTGTGCCGGTCATTAATGTGGTCGCCTATCAGATTGCTTCTTCTCAGCTGAGGCCTTGTGGAGGCTGGCTGCCGTGGAAAATGTGTAATGTGACAGTTTACACCACAGTTTATAAAACCCAGGAGGATCACATCCAGAAAGAGGTCAGGAGGTGCTGCGACGGCTACGAACAAGTGGGCAGTTACTGCGCCCTGAATCTTAACAGGAGTGCGGAGTTCACAGCTAAACCCGGAGTGTGCCCTCATGCACATCCAGGACTCAGCCCAGGCCCAGTGTTGGGGTGTGAGTGGGACACAGACTGTCCCGGCTGGCAGAAATGCTGTCAGACTGAAAACAGTCTCCGCTGTGTAGATCCTCACACACAAGTGAATATCAGCTGGTGGCTCAGTCTGAATGTAACGGTGAAGGTCTCGTACCATCTGGTGAATTCCAGCAGTGGACTCTTCAACCACACACGGCTCCTACACTCTGTGgtgACTGGAGCTCTTAGTTTTCCTTCAGTCTCTGTGTATCATGTGACCTCATGGCCCGCTGGACCGGTCAGTACTGTCTCCTTCATGCTGCTTGGATCCTCTGAACCTTTGTCCCCTGCAGAGACAGACCAGAGGCTGCAGGTTCTGCTGGAGAACATCGAGGAGGTCACCAGTGTGAACATCAACGatgtgGATGAGTGTGTTACTCCAGTGCTGAAAGCATGCCCCCCTCAGTCCATATGCAGAAACACATATGGATCACAGAACTGCACCTGTCCACCAGGATCTACTGACCTTCACCCCAGCAGGCCTGGAACAAACTGCACCTTCCAGATTGTACTCACTTCAAATCCGGTGCGGAAACCTTCTGTTGATCAAACACCAGCCTTCACTTCTCTGTCCAGCACATCCTCTAGCACAACAACCAGCACTCCTATCAGCCCTCTGACCACTAACGGCTTTCCGTCTCCTGAAAACAGTAATAAGACCCTTCATGCAGAGGCTCGTCTGACCAATATAAACTTCACCGATGCTCTGAAAGATGTCACCAGTGTGGAATACCATAACCTCACAGAGTCCATCATCAAAGAGATTAAAGAGTCTCTGCCCTCAGAcattctggacatggtgaactcTGGGAAAGTGATTGTTCAGATCACTAGATTCTTTCAAGGCAGCGTGGTGGTAAAGTTCACCCTGATTTTCCTGCTCGACAGCACCCAGAACATCAGTACTGTGGCCAGTGCTTTGATGGAGTCTCTACAGAACAGCACCATATACTTAGTGGACAAGAACAGCACCTTTATAAACGATGTGGATGAGTGTACAACGGGTGAGAATGACTGTTCCCCCTGGGCCCAGTGTAACAACACCTATGGGTCGTACACCTGCGCCTGTCAGCCAGGATACACTGACGCAAACCACTCGAGGCCTGGACGCATCTGTGAAGCCAGCCTCAATTTGACAGCATCCACCTCCACACAGCCGAATGAGGCATCTGCTGAGTCCTCTGCATCTACAAACCTAACAACTGTGACAGCTGACAATGAGACACACACAACCACTCCTGTTTCCAAAACAACCACAGTCATGGCTGTTCCAGAAATCGAGAGAGTGAACTTGACTTCCTCAACATCACCTACAACGTCTACAATGTTATCTACAGCATCATCTACAGCTTTATCTACAGCATCAGCTACAGCTTTATCTACAGGAGTATCTACAGCATCTACAATATCAGCCACAACATCCACCGCAATCCCCAATCCCCTCCCGATCATTTCCAGAACAGATGCCATTACAGTGGAATGTATGGTGGGATCCATGACCGTCTCTGTGGCAAAACATTACCTGATATCTCACCACATCCCAGAAGCAGCCCTGTACCTGGGTCAACCACAGTGCAATGTGACGAACACAAACTCCACCCATGTACAGCTCACTGCGGACTGGAACAAGTGTGGGCTCCAGATAACTGAAAACACCACAGTCCGTGTGACCCTCCACAGCAACATGACCACATCAGTGCCATTTATTCTGAGGCCGTTTGTACAGCTGGAGGTGCCAATCATCTGCGTCTACTCACACAGTATCAACGTCTCCACTGGATACGAGTCCTCCAGTGATGTTGATAAGATCAATGACCCGGTGCTGGGATCAGGGAACTTCCAGGTGACTATTCGTCTGCTGAATGGAACAATCCCCCTACCTCAGAACTACACCCTCTCCCCCGGGGAGCAGGTGACCATAGAGGTGGCAGTCAATTCCAATGTGTCCCAAATAAAAGTGGTCATCAACCAATGTTGGGCGAACACCAACAGCAACCCAGACCCTCCCCTATACATCTTCCTGAAAGGCAGCTGTCCTGTTTCAGAATACGCAACTGTGATACAGAACGGCGTCTCCTCAAAGTCTCTTCTGGAAGTGAATGTTTTCTCTCTAGTGAATCTGGATATCATTTACTTGCACTGCCAGATCCAAATCTGCATTGAGACGGCATCAGCCACCTGCCAACCTGACTGTACGGCAAGGAGCTCCAGAGCTGGTAATGTAATTGGAATGGCAAAAGCTTCATATGGACCCTTGAGGAGGTCACATCAAGTGACTCTGGATGAGGTTATTCAGGGTACGCGTGCCATCGGCTTCATTGTGCTGGGAGTCGGCCTGTTTGTTTTCATCGTCGTGGGCGTGGCAGCCTTTTCTTACTACAGAAAGAAAATGGGAAACTACAACTTTCACTTTAGACCCCGACCAGAGAACTTCACATATCATGTCTTTGACACCTAGACCAGACTACGGTCATGTTTAGTAAGGGCTCTGCAGTTTTAGTCATACAGAACTACATAGAACAATTCATGGCTCATAGTGTCTTAGGGTctgagctgcagtttattaCTCAGAACTTCAGAgcttacacacattcacatacactGCCACTACTGTATACTGAATCATCTGTGAGCCTATGTTAGTAAACAAGAATAATTCAGATTAATAACTGAATGACGCATCTGTTAAAGGAGTTAAACCAGGTAAAATGTTTTGtagtttaacatgtttttgtgtttggcATTAATGTCACTGTACTTTATGATGCCCAACATTTGATCTACATACGATGCACTTTAGAAGCTTTATTTGATGCTCACATACTGTATACTTCAAATATTCTACAGACTGGTGAATAAAACTATAGCTCTATTGTATtgtgaaaatgtttattaaaaacacattacaacGTCC

Function

GO: NA

KEGG:

id description
K24499 UMODL1; uromodulin-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238321 lncRNA upstream 20251 14142167 ~ 14243143 (+) True LOC103042124
TU238323 lncRNA upstream 25005 14220495 ~ 14238389 (+) False LOC103042124
XR_002651442.1 lncRNA upstream 30889 14229815 ~ 14232505 (+) False LOC103042124
TU238332 lncRNA upstream 38695 14178804 ~ 14224699 (+) True G175984
TU238325 lncRNA upstream 41048 14220495 ~ 14222346 (+) False LOC103042124
TU238354 lncRNA downstream 2498 14284227 ~ 14286973 (+) True G175999
TU238355 lncRNA downstream 2498 14284227 ~ 14286973 (+) False G175999
TU238358 lncRNA downstream 3573 14285302 ~ 14288274 (+) True G176000
TU238369 lncRNA downstream 254539 14536268 ~ 14536547 (+) True G176010
TU238651 lncRNA downstream 388555 14670284 ~ 14670678 (+) True G176216
XM_007259439.3 mRNA upstream 15735 14244212 ~ 14247659 (+) True atg101
XM_007259436.3 mRNA upstream 132704 14101949 ~ 14130690 (+) True trim37
XM_007259431.3 mRNA upstream 164701 14082474 ~ 14098693 (+) True rabgef1
XM_007259433.3 mRNA upstream 164701 14082474 ~ 14098693 (+) False rabgef1
XM_007259434.3 mRNA upstream 164701 14082474 ~ 14098693 (+) False rabgef1
XM_007259444.3 mRNA downstream 35676 14317405 ~ 14331559 (+) True mogat2
XM_015608417.2 mRNA downstream 58679 14340408 ~ 14352188 (+) True dgat2
XM_007259445.3 mRNA downstream 74567 14356296 ~ 14506004 (+) True uvrag
XM_022681109.1 mRNA downstream 441254 14722983 ~ 14729064 (+) True LOC111195050
XM_015608410.2 mRNA downstream 637130 14918859 ~ 14921856 (+) True LOC103022111
XR_002651440.1 other upstream 394539 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 577831 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 844978 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other upstream 844978 13411110 ~ 13418416 (+) False LOC111195048
TU238049 other upstream 935753 13320784 ~ 13327641 (+) False LOC103028411
trnal-uag_3 other downstream 645599 14927328 ~ 14927409 (+) True trnal-uag_3
TU239485 other downstream 2539230 16820959 ~ 16824317 (+) False fam136a
TU239536 other downstream 2761106 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 3942544 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 3942544 18224273 ~ 18226133 (+) True G177219

Expression Profile