RNA id: XM_007260810.2


Basic Information

Item Value
RNA id XM_007260810.2
length 2747
RNA type mRNA
GC content 0.46
exon number 3
gene id tmem267
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21274520 ~ 21284697 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGAAGGCTTGTCctcctcctacacacacacatacacacacacacacacacagaaatcagGAGTGCTGGGAGCAGGCAGTTTGCGGAGGAGAGGGGAGAGCATGTTAAGTGACTGCTGACCCCTCTGTTCTAGAAGCCAGCGATGCGGGGCTTCCACTCCAAGCTGGATGCGTCGTCGCTGGGCATGGCCGTGCCGCTGAACCTGGCCGTGGAGACGGAGAAGGCCCAGGCTCTCCTCCAGACCTTCAGCACAGCCTCTTTACTGGCCAGTGCAGGCCTGGGAGTCTTCTGCTTCCTGGCCGACCACATCCTGACCTCCCCCTTCATCCAGCACCATGTGTGGCTCAGGGCAGCGCTGGACAACTCTGTGCACGGTGTGATCGGTCTGTGGTCCTGGGCCATCGTCATCGGGCTGAGGAAGAAGAGTGACTTCTATGAAGTCGTCTTGGCGGGCTTCCTCGCCTCCATCATCGACCTGGACCACTTCTACATGGCCGGATCGCTGTCGCTCAAAGCTGCTCTGAGTCTGCCCCAGCGGCCACCGCTGCACTGCTCCACGCTGATCCCGGCGCTCTGCTTCTCTCTGCGGCTGCTGATGTGGGCCTGCCGGCTGAAGGACTCGTGGTGCTCTCTGCCCTGGATGCTCTTCATCTCGCTGGCGTCCCACCACATCCGGGACGGGGTGCGCCACGGCCTGTGGCTCTGTCCCTTCGGCAACACGGCGCCCATCTCCTACTGGCTGTACGTCACCATCACCGCCACACTGCCGCACTTGTGCTCTGTGCTGATGTACCTCACTGGCACCAGGGACATGATCTCCACCAAACACGGCGTGGCTATTGACGTCTGAGGGAGCGCTTTCACTTTTAACATACGCAGGCTTGTACCATGTGTTTGGAATTTGATTCTTCTTTCCTCGCACTGGAGACACTTCTGTGACAGACCTTGCGCTCCCCTTTTTTTCACCTTATGCCTCACGTCCATTGTGATCAATCGATCAGTTTAACCCCCTATCCCTCACCGTTACCTTTTTATCACATCACATCGTGTCTGTGGTCATTTAACTAGCTGTTCAGGTGTCACTTTGCTGTCAGGTTTTCTTGACCTTCCTTAAATGGACTCTAATGTGCATTTCTACTATTTATATTATTGTCAGAGAGACTGAAGAGACTGTTGCCCTCCTCGTCTGAAGGATTTTCTTGCCTTGTGGTCGTACTGAGCCTACTATTCTTTTACACTTGATGTGATTAGTGAGTTTAGTCCAAGAATTTTTAAACGCTTTATTTTCCCAGACAAAATCAGGATTATCAGTCACTCAGACCACATAGACAGCCTGAGCTGAACATCATCTTTCACCAAAGTACAGAATTACTGTACTAGACATCATGGAAATCTCACTTCAGCGAACAGACAGATATCCTTTAACACTGACTGACTAGCTATCTTGGCAAGCTTCGTTTATTCAGTGTCAGAACTTCATATGCGAATATATGCTGAAGAGCTCAGGACATTTAACTTTACTCATTTAGCTTACTTTAAGACAACTTAGAATAtttgtagtgtatagtgtttcCACAGTAACTACAATCTTATGTGTTTTCGTTAGGGTCCAGGGTTTCATGCAGAACATTGGCTAGTCAAGGTCGAGCCTTTGCATATGGTAATGCTGGTGATTCACCGTTTTTCTTGACAGATAATTATCTTCTTTCCAGCAGATGTCGCTATTTGGCCCCATTGCAATGCGGTGGCAGGGGGCATTTGTTTCCAAGGCAGTCAACCTAACTATAAAGTGCTGTGGAAAACCCTGAGAAGAAAGGAAGTACAATAGAAGAGAATCTCAAATAGATGGTAGAATACCAATTTGTGAATCTCTTATGGGTTTTTATTGAACACCAAAAAGTGCTTCTGATTTAGTACAAAACTAATGATTTCAGATGAAGCAATTGAGCTAAATcaatttcttgattttttttttttgtcgcatACATTGttgaatgttattttaattgattttaatgttCCAAattccatccattccatccaataatacattttcacacctttaaTGCATAACGCATACATCCGCCCACAGCTTGTGGTGGAAAGAGCTTTAGATACAGGGCATTGtgttagtaatagtagtagtagtagtaattgtgtgattgtgtgctgTGATGAGTGTATCAGGAAGATAGGGAAGTGAAAGAATGGAAAAGGTCTGTTTGCTGTTTAGACTTCCAGGAAAAAGGAGATTAGCATCAGGTGCTTGTAGAAAAAGGCTCTGAAGAAAGAAAAGGGAAGTGGGTGGAGATTACACTGCTGGTTGATGTCAGGTAGATGTAGGCCATAAGCATTTGAACAGTGGAGTCAGCTTTTTAATGAAACCTTAAatctacactgcctggccaaaaaaaggtcTCAAGCTCTAATAGTTGGTCGGACTACCTTTTAGCTTCGGCTGTGGCATCGTTTCTACAAGCTTCTGGAACGTCACAACTATTCATAACTTATTTCTCTCCAGAGctacaaataaaataagtattgATGATGGGTGATTTAGAGCACTGTGCAAAATCTTCTCCAGCACCAAAGATTTTCAATGAGGTTCATGTAGTGGTCAAGGATGAACTcctgctccctgaaccctgcaCTCTTTCACAGTTTGaaccccatgaatcctggcattgtcatcttggaatatggccgtgccatcagttaaaaaaaaataaaaaatccatggatggaat

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241365 lncRNA downstream 9506 21256649 ~ 21265014 (-) False G178157
TU241366 lncRNA downstream 9506 21256649 ~ 21265014 (-) True G178157
TU241333 lncRNA downstream 432146 20842047 ~ 20842374 (-) True G178134
TU241270 lncRNA downstream 556455 20717753 ~ 20718065 (-) True G178096
TU241264 lncRNA downstream 658509 20615802 ~ 20616011 (-) True G178090
TU241415 lncRNA upstream 190533 21475230 ~ 21475642 (-) True G178195
TU241421 lncRNA upstream 230891 21515588 ~ 21515985 (-) True G178201
TU241456 lncRNA upstream 531430 21816127 ~ 21816402 (-) True G178236
TU241457 lncRNA upstream 548044 21832741 ~ 21832989 (-) True G178237
TU241473 lncRNA upstream 640795 21925492 ~ 21927360 (-) True G178251
XM_007260819.3 mRNA downstream 849750 20421350 ~ 20424770 (-) True sigmar1
XM_022681239.1 mRNA downstream 853702 20408361 ~ 20420818 (-) True katnal2
XM_022681240.1 mRNA downstream 853704 20408361 ~ 20420816 (-) False katnal2
XM_022681236.1 mRNA downstream 1046226 20219002 ~ 20228294 (-) False LOC103029139
XM_007260828.2 mRNA downstream 1046226 20219002 ~ 20228294 (-) True LOC103029139
XM_007260808.3 mRNA upstream 12687 21297384 ~ 21312937 (-) False rassf6
XM_007260809.3 mRNA upstream 12687 21297384 ~ 21312937 (-) True rassf6
XM_007254077.3 mRNA upstream 104530 21389227 ~ 21423245 (-) True LOC103045065
XM_007254078.3 mRNA upstream 260520 21545217 ~ 21665726 (-) True epha5
XM_022680719.1 mRNA upstream 637633 21922330 ~ 21923015 (-) True LOC111194991
XR_002651453.1 other downstream 2146398 19119786 ~ 19128122 (-) False LOC103035567
TU240722 other downstream 2182374 19091146 ~ 19092146 (-) True G177704
TU240520 other downstream 2871512 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 3099995 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 5483876 15780555 ~ 15790644 (-) False stoml2
TU241386 other upstream 6825 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 648822 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 1170800 22455497 ~ 22456779 (-) True G178426
TU241723 other upstream 1216621 22501318 ~ 22506501 (-) True LOC103023660
trnam-cau_23 other upstream 1245911 22530608 ~ 22530679 (-) True trnam-cau_23

Expression Profile