RNA id: XM_007260812.3


Basic Information

Item Value
RNA id XM_007260812.3
length 3164
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC103022731
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20842037 ~ 21177458 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGACAGAGCAGCGCGAGCCGCTTCTGAGCACACACACTCCTGaccacgcgcacacacacacacataaatattcGTACACACACGCACGCCCGCAGGCGCGCACACACGCACGGGTGTCGATACGCACAGGACGCACAACTTTCTGCGCTGGAGCTTCTCTGACACGCGCGcgtgcacagagagagagagagagagagagagagagagagatacacaccTCGCTTTTGCAGGAGacgggacacacacacacttacgcgCTCACTGTggaagagcgagagaggagTCAGAGGAGCGCGGGCGCGAGAGGGGGAGAGAGCATCTAAGCTGTGCTATAACCTCAGTGAAGGCggtctgagacacttggtctGGAGGAAGAAGACGTTTCTGCAGGATTAGTAGatgGCCAACATTGTGACGTCGGTGTGCTGTGTGGTGCTCgccgtggtggtggtggtgtatgccCAGAGACGCAGCCAGCAAGGGGCCAGGATCCAGTATGCTCGGATCGGCAGCGACGTGACCATGCAGTGCGGCTCTCTGGACAACGACGCCTCGGTCATGTGGAAGGTGAACGGCACGGACGTGAAGGCTCGGCGGCGGGAGGAAGGGCCGCGGCTCACCCTCATCGAGGTGGACATGACCAGCAACGGCCTCTACAGCTGCTTCCAGAACCCTGACGACTTCCAGCGCCGTGACCAGATCACACTTcgggttggagTACCTCCGAGGGAACCGCAGGTGACATGCCGATCCAACACGTACCCCAAGGGCTTCTACTGCAGTTGGCACCTTGCGCATGCCACCTACATCCCAACAGAGTTCGAAGTCGACGTCCGACACAACCAGAAGCCTCTGGAAGTGAAGCGAGATGAGGTCCATAAGAACCGCTGCCACGTGAAGTTTCCAGAACTGTTCTCCAGTTTTCCCTACCGAGTCAACGTAACAGCAATCAACGCACTGGGCAGTGCATCTGCAGACCACAGCTTTGAGGAGTCCTCCATGGTGAAACCAGACCCTCCAGAGAAGGTAGTGGCCACGCCCATCCCCAACAACGTCCGGCGGCTGGTGGTGACCTGGAACAGCCCCTCCACATGGCCGGACATCGACTCCTTCCCCCTCAAGTACTTTCTGCGCTACAGGCCGCTCATCAAAGACCAGTGGCAACATGTGGAGCTTTCGGACAGCACCTCCCACACCATAACAGACGCTTATGTGGGGAAGGAGTACATCATCCAGCTGGCTGCCAAGGACATGGAGATCGGTACATGGAGCGACTGGAGCGTGGCCGTGCATGCTACCCCCTGGACAGAGGAGCCCAAGCCCATCACCTCCACCACTGAAGCAGACGTGCTAATAGAGACCACCCCCTCCTCTGCCCCGCCCTCATTCAAGCCAAGGGTTGGCAACCCCACAGGTGGATGCTCCACCCTTATCTGCTCATACCATATCCTCCTGGTGTGCACCCTGATGTCCATCATGTGATGTTTATGATTCATTCCTGTGGAAAAGTCTTCTAGTTCTATTTGCACATGTTAATGGATATCGTGCATTGATAATTTAATTCAAGTTTTTTTCTCACgacaagaaaaaaataggaacgattaataaataaatgatgccgTTTTGCGGAGGAAGgaacgtttttaaaaaagacaaaataaatatgagaagaagaaggagaagaagaagaacagcaAGAAACGAATGATAGAGCTTCAAAACATCATCTCGGGCAGCGTGGATGAAGGTGAAGGTGGAGGTGGAGTTATTAGCGCAGGCACGGGAGAGCGGCGTACCCCGGGGAAGGAAAAGATATGGAAATGAATTAATAGACTCCAAATAAAGCATCTGTTTCACAGCAAAGCAGCACAACACCcagaaccaaccaaccaaccaatgatccacccatccatccattctccCCTATTTCCATTggaaattaaattttacatttttgatttttcctctttttgaagcaaataaatcagattttttcccctttttccttattttggGGTATTTTCTGGAATCTTTCACACAACCATCAAATACAAGTACATGTACCAACACACTGGAGATGCTCAAACAAGTCAAGCAAGTGTGTACTATCAATATATCATCAATTTCAGCAACATACAGCTAACTCATCATGCCAAAGACTCTTGGAgaactctcttttttcctccccCCCCCTCATCCCTCGCTTCCCCCTCGGTCTGTTGTTATGCTGTATGCGCCCGGCGTCTGGACAGCCGCAGTGCAGAGATCTCCATCCACGGACCTCCAAACAGGAGCTTCATAGACTGAGGACTTCATAACTAACGTAGAATGAAGGTCATCGTTCTTCAGATTATACGATTCGATACGATTCAATTCGATTATGAGCTTTTGCTTTGTTCTTCCACATTTACAGTacctttctttcactttttaagATTGTTTTATTCTCCTGTTTGACCCGTGACATCGAACAGACCTTCAAAAGACGttaacaaacaaaccaaccaaccaatcaacacacacacacaaatacacacaaacacacacatacacacactttcccTCGCACAcatgaacaaaaatgtaatgtactgGACTGCCTTTTTACatggaaaaagtaaaagaaaaaaaggagtgGAGTAAAGTGGAGATAATGAATTGTATTAGAtcatttctcttgtttttttctctctttcttacacatACGTTGTTCTAAGTTGTTCTAAGTTGTTCTAAGTGGCATAGAAcctcttttctctcactcttaccCAAATCAAAAAAAGTTTTCTGCTTTATGTTCTTGGTTTATGTTcgattataaatgtaatatccGACGCcgcatttttgttttctttactcaAGAATTATTTTGTtgtgatttaatgttttttgttcttttttttgtttgtttaatattaaacaatatcCATATAGCATCTTTAGTTTCTTTTCTCAAACATTCACATTTGCTTAATTGCGTAATTCTCCACGATCATATTTTGTAAACTACGATATGTATCTTTaacatggacaaaaaaaaatactttattatttaataatgtatgTATTAGCTTTAGATTCTTGTAACCTGTATCTGGGTTCTTTTTATAGATGTATATAAAAAACGAGAGGTTGTTCATTAAATGTGACCATTTCACAATGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
K05059 CNTFR; ciliary neurotrophic factor receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241271 lncRNA upstream 120646 20721073 ~ 20721391 (+) True G178097
TU241265 lncRNA upstream 217009 20624779 ~ 20625028 (+) True G178091
TU241262 lncRNA upstream 239248 20602451 ~ 20602789 (+) True G178088
TU241220 lncRNA upstream 417323 20421369 ~ 20424714 (+) True G178055
TU241203 lncRNA upstream 442872 20396382 ~ 20399165 (+) False ier3ip1
TU241284 lncRNA downstream 59681 21237139 ~ 21264984 (+) True G178105
TU241422 lncRNA downstream 363119 21540577 ~ 21546968 (+) True G178202
TU241453 lncRNA downstream 521975 21699433 ~ 21699633 (+) True G178233
TU241476 lncRNA downstream 795256 21972714 ~ 21973034 (+) True G178254
TU241500 lncRNA downstream 921861 22099319 ~ 22099558 (+) True G178278
XM_007260816.1 mRNA upstream 263252 20428762 ~ 20578785 (+) True galt
XM_007260818.3 mRNA upstream 434469 20403494 ~ 20407568 (+) False hdhd2
XM_022681241.1 mRNA upstream 434469 20403600 ~ 20407568 (+) False hdhd2
XM_015608722.2 mRNA upstream 434469 20404354 ~ 20407568 (+) True hdhd2
XM_007260817.3 mRNA upstream 442872 20396377 ~ 20399165 (+) True ier3ip1
XM_007260815.3 mRNA downstream 25804 21203262 ~ 21258587 (+) True LOC103023250
XM_007260811.3 mRNA downstream 107788 21285246 ~ 21295849 (+) True cst8
XM_022681245.1 mRNA downstream 148754 21326212 ~ 21369274 (+) False musk
XM_022681242.1 mRNA downstream 159219 21336677 ~ 21369274 (+) True musk
XM_022681243.1 mRNA downstream 159219 21336677 ~ 21369274 (+) False musk
TU241070 other upstream 702473 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 748175 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 1066246 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 1119648 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 2298040 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 1071686 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 1282934 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 1282934 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 1284533 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 1309365 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile