RNA id: XM_007260816.1


Basic Information

Item Value
RNA id XM_007260816.1
length 1351
RNA type mRNA
GC content 0.54
exon number 11
gene id galt
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20428762 ~ 20578785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTCTGACTCTAAACAGAAACTTAACACAGCCAGTCAGCAGCTGAAGACGCTGCAGCtcctgtgttatttatttatggtgtTTTCTAAACACACTTTGGGGGAATAGTCAGGGCTGGAATTCTCTTAATTCTTGCTGTAGAGGAGGCTGATGCATGACTGAAGCATGGAGACTTACAGCACAGTCCAGTTCGACCCCaaagAGCACCAGCATCTGCGCTATAACCCCCTGCGGGACTCCTGGGTGCTGGTTTCAGCTCATCGAATGAAGCGTCCCTGGAAAGGACAAGTGGAGAAGCCGCCTGAGGACAACGTCCCACGCCACGACCCCAACAACCCTCTCTGCCCCGGGAGCACCAGAGCCAACGGCGAGGTCAATCCAGAGTATGACAGCACTTTCCTCTTTGAGAACGATTTCCCAGCGCTGCAGCCAGATGCTCCAGACCCTGgttCAGATCATCACCCACTGTTCCAGTCTAAAGCTGCTAGAGGAGTTTGTAAGGTCATGTGCTTCCACCCCTGGTCTGACATCACTTTACCCCTGATGCAACCAGAGGAGATCCGCAAGGTGATTGACAAGTGGGCGGAGCTCATTGAGGAACTGGGCCCCACTTATCCATGGGTGCAGatCTTTGAGAATAAAGGAGCCATGATGGGCTGCTCCAACCCTCATCCTCACTGTCAGGTTTGGGCCAGCAGCTTCCTGCCTAATGAACCGGCCCTGGCTGAGCGCTGTCAGAGGGAGTATTTACAGAAACACGGAGAGCCCATGTTGCTCCAGTACGCTCGCATGGAGGCTCAGGCACAGgaGCGTCTGGTGTTGGAGAACGAGCATTGGCTGGTAGTGGTGCCTTATTGGGCAACGTGGCCTTTTCAGACCCTGCTGTTGCCACGAAGACACGTTCTGCGTCTCCCTGACCTCACATCCcaggagagagacaGTCTGGCATCCATAATGAAACGGCTCCTGACGAAATACGACAACCTTTTTGAGGTCTCCTTCCCGTATTCAATGGGCTGGCATGGAGCCCCGACAGGAAGCCACCTGAAAGAAGACATGAGCCACTGGCAGCTCCATGCCCACTACTACCCGCCCCTCCTCCGCTCGGCCAGCGTCCGCAAGTTCATGGTGGGGTACGAGATGCTGGCGCAGGAGCAGCGGGACCTCACACCTGAGCAGGCTGCTGAGAGATTACGGGGGCTCTCTGAGGAGCACTACAAGATCACAGCCAAGGAGGGACAAGCGGGTTTGTAAACGGAGTGAACTGAGCAGAAGAGAGGACGGACTGGAGGACGCGCTGCAGAAGATGAACAGCTGAAGAAACTTGTTAATAAAGTGTTAGACTTCATAA

Function

GO: NA

KEGG:

id description
K00965 galT, GALT; UDPglucose--hexose-1-phosphate uridylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241220 lncRNA upstream 4048 20421369 ~ 20424714 (+) True G178055
TU241203 lncRNA upstream 29597 20396382 ~ 20399165 (+) False ier3ip1
TU241192 lncRNA upstream 96759 20331234 ~ 20332003 (+) True G178035
TU241186 lncRNA upstream 141183 20287072 ~ 20287579 (+) True G178029
TU241183 lncRNA upstream 165988 20261886 ~ 20262774 (+) True G178026
TU241262 lncRNA downstream 23666 20602451 ~ 20602789 (+) True G178088
TU241265 lncRNA downstream 45994 20624779 ~ 20625028 (+) True G178091
TU241271 lncRNA downstream 142288 20721073 ~ 20721391 (+) True G178097
TU241287 lncRNA downstream 352996 20931781 ~ 20958483 (+) True G178108
TU241284 lncRNA downstream 658354 21237139 ~ 21264984 (+) True G178105
XM_007260818.3 mRNA upstream 21194 20403494 ~ 20407568 (+) False hdhd2
XM_022681241.1 mRNA upstream 21194 20403600 ~ 20407568 (+) False hdhd2
XM_015608722.2 mRNA upstream 21194 20404354 ~ 20407568 (+) True hdhd2
XM_007260817.3 mRNA upstream 29597 20396377 ~ 20399165 (+) True ier3ip1
XM_015608718.2 mRNA upstream 33606 20381689 ~ 20395156 (+) False skor2
XM_007260812.3 mRNA downstream 263252 20842037 ~ 21177458 (+) True LOC103022731
XM_007260815.3 mRNA downstream 624477 21203262 ~ 21258587 (+) True LOC103023250
XM_007260811.3 mRNA downstream 706461 21285246 ~ 21295849 (+) True cst8
XM_022681245.1 mRNA downstream 747427 21326212 ~ 21369274 (+) False musk
XM_022681242.1 mRNA downstream 757892 21336677 ~ 21369274 (+) True musk
TU241070 other upstream 289198 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 334900 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 652971 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 706373 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1884765 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 1670359 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 1881607 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 1881607 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 1883206 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 1908038 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile