RNA id: XM_022681238.1


Basic Information

Item Value
RNA id XM_022681238.1
length 3285
RNA type mRNA
GC content 0.51
exon number 9
gene id skor2
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20381689 ~ 20395156 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAATCCTAGGGCAGGTTTTTGGTGACTGCCAGCCAATAGTTGAGCAGGGAGGCGGGACCTGTCGGTTTACAGGTGCGGGGAAAATACAGCGCCGCTGGCGAGACGGCTTTTAGAGCGAATAAGGCAGCAGTTAGTAGCTCATTCGCTCGTGTTAACGCGGCCGGTGTACGGAGTTCTCAGTCTGCTGgagttcatttttttgttttccagtcGTGTTTACTGACTTTAGGTCGCGTGTTTAAGCTTTATGTAGTTATTTGTGAAGGGAACACGGGGAATGCGTCGCGTTTTGTAGCGGTTTTGGATTTTTCCGACCGAACACGGAGCTCTCAGTTTCCTAGTTAAGGTCTCCAAAGGATGGACAAAAGTCTTTTTCCTGGACCCAAAGACATCATTATGGCTACACCGCCCAGCTCATTCCAGCAAGAACCTCTCACTCCACCCAGACCCAACCACTCTCTAAAGCCCAACCAGGTTGGTCAGGTCACTCTATATGGGGTTCCCATCGTTTCATTGGTCATCGACAACCAGGAGCGACTGTGCCTGGCTCAGATCTCCAACACCTTGCTGAAGCACTACAGCTACAATGAGATCCACAACCGGAGGGTGGCTCTGGGCATCACATGTGTGCAGTGCACCCCCGTTCAGCTGGAGATCCTTCGACGAGCAGGGGCCATGCCAATCTCATCCCGCCGCTGCGGCATGATCACCAAGCGTGAGGCTGAACGACTGTGCAAGTCTTTTCTGGGTGAGAACTCACCACCCAAGCTGCCCGACAACTTTGCGTTCGATGTTTCGCATGAGTGTGCCTGGGGCTGCCGAGGCAACTTCATCCCTGCTCGCTACAACAGCTCCAGAGCCAAGTGCATCAAATGCTCCTACTGCAACATGTACTTCTCTCCCAACAAGTTCATCTTCCACTCGCACCGCACACCCGAGGCCAAGTACACACAGCCTGATGCCGCCAATTTTAACTCCTGGCGCCGGCACCTCAAGCTGTCTGACAAGACACCGGCAGATGACATGGTGTTTGCTTGGGAGGATGTGAAGGCCATGTTTAACGGAGGCAGCCGCAAGCGGGCCTTGCCTTCATCCCACTGCTCTAGTATGGACTCAGTGAAGGCAGTGGGCTCTGTGCTACCCCATGTCATTTCGTCTGACCTCGGGCAGAAGAGAGGACGGTACGAGGAGGACGATGACCTGGACGGTGGCGGTCTCTCACCACGGAAGAACCCACGCAGTTATCCGGTCATTCCAGTGCCCAGCAAAGGCTTTGGGATGTTGCAGAAGTTCCCACCAACTTCGCTTTTCCCCAGTCCCTACACCTTTCCAGCCTTTGGGCTTTGCCAACAGAAGAAAGATGATAGCGAGGCACCCAATGGACAAAAAAACAGCGGCCTGTCAGGGCTGCTGTGGCCAGGGCGCAAGGATGCTTTTTATCCCCCTTTTTGCATGTTCTGGCCTCCTAGGGCGACAGGCGGCATCCCGGTGCCTACATACCTTCAGCCACAGCCCAATGCTCTCTCCACACTCACAGAAGCCCCATCTCTGCGGCAGGCCTTTCTGGACCTGTCAGATCAGGGTACAGAGACTGGCACAGCAGCTGGCATTGGCGCCAACCCTAGAACAGGGTTGTTTGAGAGCGAGTGCCCGCCTGTAAACCCACCCGACCTGCGGCCTGCCGCCCCTGAAGGCTGGCTTAAGCTCCTGGATGCTCCTTCTCTTCAGGCCCGCAAGGCCAGCTACCATTCCTCCGCCTTCCGCCCAGTAGTAAAGGACACCGAGAGCATCGCTAAGCTGCACGGCAACCTGGAGGACCTGGGGGCAGAAAGGCACCTCTCACCGGGTACCAGCTGCAGCTACCAGAGTGACAGTGGAGAGAGTGACGAAGAGCAGGAGGTAGACGTGGAGACCAAGCAAGATGAAGAGCAGGACGATTTCAGCAGcctaaagcagcagcagcagtcacaGCAgccagcagcacagcagcagcaaccGTGCGGCCTGCACCTGCGGGGGCTCACAGAAAGCAACGCTGGGGATCGGGATAAAGACACAGGCCTCTTCCCCCCCACCATCCCCTCTGAAAGCTCCGCCGAGGACAAGCCCAGGCTGGCTGTCAGTCCACCCGCCTCCCTCAAAGTCCCCAGCCCCATTCACGCCTCACTGGAGGACACCACCACCACCGcgtacaaaaatTCACACAAGGGCAGAGACGATGGGCTCCCAGCTTACGCAACCAAAGACAAAGCTTCTCGTGCAGaagaaaacaaagaacagaGTAGTTTCTTCCTCCCGGAGACGGAGACATCCGCGCCAGAATACTGGAGGGAGAACACAGATCACAGTCAAGACCAACATTCACCAGCTTCACTCAAGAAAGATGTTGAGAACATGGAAAAAGAGGAGCTCCAGAAAGTTCTCCTGGAGCAGATAGATTTACGGAGAAGACTGGAGCAGGAGTTCCATGCTCTCAAAGGCAGCTCACCCTTTCCCGTTTTCCACAACTTCCAAGATCAGATGAAAAGGGAGCTGGCATACAGAGAAGAGATGGTGCAGCAGCTACAAATGATTCCTTATGCAAATATtatcagaaaagaaaaagttgGCGCACACCTAAACAAAAGCTGAATGgatatttgaatatatttcaTATGAAACACCGACAGGCTGTATCTGCActcatttgaaatacacagaacaTGATCTGGATCTTCTTGATGACTCTTAACAAACTCAGCAAAAGCAATCCCTTCATTAAGGACAGTTAATGAGCAGTGCTTTCATCAGCTGCTGATCATCTGAATATACTGAACTCTATCCATGTTTTCCTGACCAAATTAATGACCAGTCTACAGATCCACAGAGCAAGTAGCCCTGCATCCTGCACTAGTGCTACATCACATGTTTAAACAGCCACTTCCTGTACAGTGATCTCATTTTGCctattaatttatgtaattatttatttatgtatttaattatttattcatttatttatttgtaaaaactgacctgtgtataaatatactGGCTATAAAAATACCGTACATGTACAAGAATAATATCTGGGGGAAACATTTGCTCTACAGGCCTACTGATGGAATCTCATGGCTACGAGCAACTGCGCAAGAAAGCGAACCTCTGCACTTGATTGTTTAAATACAGCATTGACAAAGTCAAAATGAAgaatgttattattgttaatgcaaatgtatttaaatatgttctTGTAGTTTCTCTACTATTTATGTGGATAGTAAAAGTCTATAACATGAAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241192 lncRNA upstream 54527 20331234 ~ 20332003 (+) True G178035
TU241186 lncRNA upstream 98951 20287072 ~ 20287579 (+) True G178029
TU241183 lncRNA upstream 123756 20261886 ~ 20262774 (+) True G178026
TU241117 lncRNA upstream 145611 20236217 ~ 20240919 (+) True G177984
TU241129 lncRNA upstream 182979 20199764 ~ 20203551 (+) True G177995
TU241203 lncRNA downstream 1226 20396382 ~ 20399165 (+) False ier3ip1
TU241220 lncRNA downstream 26213 20421369 ~ 20424714 (+) True G178055
TU241262 lncRNA downstream 207295 20602451 ~ 20602789 (+) True G178088
TU241265 lncRNA downstream 229623 20624779 ~ 20625028 (+) True G178091
TU241271 lncRNA downstream 325917 20721073 ~ 20721391 (+) True G178097
XM_015608721.2 mRNA upstream 128785 20229527 ~ 20257745 (+) True smad2
XM_007260822.3 mRNA upstream 128785 20229527 ~ 20257745 (+) False smad2
XM_007260825.3 mRNA upstream 231215 20152461 ~ 20155315 (+) True LOC103027562
XM_007260831.3 mRNA upstream 236412 20149258 ~ 20150118 (+) True LOC103030097
XM_007255022.3 mRNA upstream 289819 20089238 ~ 20096711 (+) True LOC103043854
XM_007260817.3 mRNA downstream 1221 20396377 ~ 20399165 (+) True ier3ip1
XM_007260818.3 mRNA downstream 8338 20403494 ~ 20407568 (+) False hdhd2
XM_022681241.1 mRNA downstream 8444 20403600 ~ 20407568 (+) False hdhd2
XM_015608722.2 mRNA downstream 9198 20404354 ~ 20407568 (+) True hdhd2
XM_007260816.1 mRNA downstream 33606 20428762 ~ 20578785 (+) True galt
TU241070 other upstream 246966 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 292668 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 610739 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 664141 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1842533 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 1853988 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2065236 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2065236 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 2066835 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 2091667 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile