RNA id: XM_015603867.2


Basic Information

Item Value
RNA id XM_015603867.2
length 4938
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC107197312
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11988169 ~ 11993224 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atccatTAGAAACACTGTTAAATAGATACATGGTTATTTTTTTGGAGGTTTTGTTGTGATAGAATGCTGAAGCAATAATGGTGCAAGTAGTGGTATTACGGACATGCTTAGCAGACTCATTTGTCAGGAGTGAtcttgtgtgtttgtgggggGTAGATTATGTGTTTGTGCGTTTGTTTAATTTAGTTGTAAAAGTTCCACGGTTGAAGCATTATTCACCCTCACCTGAGCTTAGGGATGAGGGTTAAGAGAGCAGCACAGCTAACATGTCTAGACGTTTCTCTAGTACATATTAAAGTTATagtgtgtactgggaataccGATTCACGCTGTTTAATACTTTATTCTCGTGAGTGATCTTGCACACCTCCTGTAGCACTGCAGTTTACTGCTGCACAAAGCTGTGTGTAATCCTTCCACAGCTGCATTCAGAAGGCAGATGAGTTTTTACAAAGCAAAGCATTTCTTTAGGATCTTCAATCTGGTGGAGAAAAAAGGTCACCCATTTAGTCACATATTGTGCTATTTATACATGAAACTACTCACCAACACATAGTGTAACAATATAATGGTTcatgcactgaagtttgtgtttcAGCACGGACCAGTTAGTGTGACGCACACACTCAGGCAGAGTATATTGAGAGCTGTAGCTGTTAACACACACAAGTGTTCCCGTTGGTTGTCAATcttctaaataaatacaagtaaGCTAAAGTAAAGCTTTAACCGTCCATTCTGTTTGACACAACTTTGGAAGAGAACAGAATGAAACATGGTGGCAGCGGTAGGCAAGTTAATTCACTGAAGAGTGTTTACTGTAAACTAAAAAGCAGACGCTGCTGAAGGACTTCACTGTGAAGCAAGAGAGTGCACTAACTATAAAATGGAGGGTCTCGTTCCACCAGTTGCTTTAAATCTGGACTCAGACAACTTGGCGAAGTCTTGGAAGGCATGGAAAGAAGAGTTTACATTGTATTTGGAGCTTGCCATGCCAGAGGCAGAGGAGACCAAGAGGGTAAAACTTTTCTACTACCTAATTGGAGAATAGGGCAGAGAGCTGTGCGCTACGCTGAGTGGAGAAGACACAGAGGCAAGAAAAACAGTGAGTAAAATAATTGAACTGTTTGATGGGCACTGTAACCCAAAAGTCAACGAGACTGTGGAGAGATACAGATTCTTCATGAGAAACCAAGGACAGGTTGAAACCATTGACAAATATGTCACAGACCTGAAGGCGTTAGCCAGCACATGCAACTTCGGAGAAATTAAAGAATCACTAATAAGGGACAGGATTGTGTGTGGAACAAATGATGCCgccctgagagagagattacTCAGGGAAGACAAACTTACACTGGATAAATGTGTACAACTTTGCAGAGCTACAGAGCTGTCCAGAGAGAATAGACGAACTCTGGAGGGAAGAACAGTAGAGGAGGTGCAAATATGCATCAAAGGACAAAGAAAATGAAATTTTGTGTAAATTCTGTGGGAAAAGACatgaaagaaataagaaaaaatgtcCAGCCTTTGGAAAGAAGTGCAAGAAATGTGGACGAGACAACCACTTCGCTGCAATGTGTAAGACCAGAACTGAGACAAGTAATCAAAGAAAACCTGTACATGCAGTAACAGAACTGGACAGTGATTCATATGAAGATGTCCTTACAGTCACAGAGGACACAGTGTCTGTGCATGAAGAGAATGACAGTTCAAAGACAAAACAACTTTATGCAGGAATGCTAATTGGACAAGAGCTGGTGAAATTTCAAATAGACTGTGGAGCATCGTGTAACATCATACCTGTAACATCATCTCCTGAACCCTGACACAAAGGTGGAGCAGTCAGACAAAGTGCTTGTGATGTATAACAAGACAAAACTACATCCTTTAGGCAAATGCAGAGTCAAGGTGAGAAACCCCAGGAACCACAAGTTGTACAGATTAGAGTTCCAGGTGGTGGAACAGCAGAGTGGGATCCCCCTACTAGGCAGAAAAGCAAGTGAAGCAATGAAGCTGATCAGAGTTCAGTATGAGAACATACTTGCTATAGACAGCATTGTGCACAAAGAGGAGATGGAAGGAGGACAGTGGACGAAAGACGAAATAATGACAGAATTCAAGGATGTGTTCACAGGAGATGGCTGTCTGGAAGGCGAATATGCCATTGAAATTGACAAGTCAGTTGAGCCAGTCAAGCTTCCAAAGCGGAGGGTACCAGTTTCTATGATGACACCCCTTAAAGAAGAACTTACAGATTTGGAATGGAGACAGATCCTGGCACCTGTTGAACGCAGTACAGATTGGATCAGTAGCATGGTGGCACTACAAAAGTCATCAGGAGAAGGAGAAACTGTGGAAATTGCAACCAAGGACCATGATGAGAAACTGAGACACTTCTTGGAAAGATGCAGAGACAGAAATATTAAACTCAATGCAGACAAGTTCAACCTGAGAAAAGAGGAAGTTCCCTACATTGGACATTTGCTGACGTCAGAGGGATTGAAAATTGACCCAGAGAAGGTGAGAGCCATCACGGAAATGCCAAGGCCAACAGATGTTAAAGGAGTACAGCGTCTTGTAGGGATGGTGAACTATCTGTCCAAGTTTTATGCTCACCTGTCAGATGATTGCGAGATGTTGAGACAACTCACTCACAAAGATAGCATATGGGACTGGACACCAATGCATAATGAAGCGTTTGCAAGGCTGAAGACTAATATAGCCAAGGCACCAGTGTTGAAGTATTACAGCCCTAAAGAGGAATTGACATTACAATGTGATGCATCAGAAACTGGATTAGGAGCTGCTCTGACATAAAAAGGTAAACCTCTAGCTTTCACAAGTAGAGCACTTACAACAACAGAGAGAGGCTATGCCCAAATAGAGAAAGAGTGTCTTGCAATTGTCTTTGGAATGGAGAAGTTTCATCAGTACACTTATGGTCGACAAGTGAAAGTACAAAGTGATCATAAGCCACTAGAAAACATTCTCAAAAAGCCTTTATTGAGCGCTCCAAAACGACTGAAAAGAATGTTACTTAGGCTACAAAAGTACAGTCTTCATGTGACCTATGTACCAGGCCGAGATATGCTTCTTGCTGATACTTTAAGTAGAGCGTATTTACCAGAGAGTATCACAAGCACAGTTGAAGCAGCGATTGAATCTGTAAACATGGCACAGTACTTGCCAATCTCAACAGAAAGGCTGGAAGTGATACGTTCTGCAACAGGGACAGATGCAAATCTGCAGAAACTAATACAGACCATTCAAACAGGCTGGCctgcaaacaaaaataatgcacCCCCAGAAGTGGCACACTACTTCACCCTTCAAGATGAACTGACCTACCAGAATGGTATAGTCTTTAGAGGAGAGCGGGCAGTCATTCCAGATGCAATCAGGGAAGAAATTATGCACAGAATACATTCGTCACACCTGGGAGTAGAAGGTTGTCTCAGACGTGCAAGAGAATGCATATACTGGCCAGGTATGAGTGAACATATCAGAACCTATGTAGCCAAGTGTGACACATGTAGGTCAATGGATGTCCGACAGCAAAAAGAAGCGCTACATCCACATGAGATACAAAGCAGGCCATGGGCTAAAGTAGGTACAGACCTTTTTGTCTTTGAGAACAAAGATTATCTGGTAACAGTGGATTACTATTCCAATTTTTGGGAAGTGGACTTCTTACCTGATATTACGTCCAGAACAGTAATTAGGAAGCTGAAAGCTCACTTTGCTAGACATGGGATTCCAGATATCGTATGTTCTGACAATGGACCCCAGTACACCTCTCAGGAGTTCCAACAGTTCAGCCAGAGGTGAGAGTTTAAGCACAGAACATCATCACCTGGTTACCCACAAAGCAATGGAAAAGCAGAGTCTGCTGTCAAAATGGCTAATGAGGATAATGAAGAAAGCAAAAGCCTCAGGTCGTGACCCCTATCTGGCAATACTGGACCACCGAAATACACCAAGCCAAGGTCTCAACGCAAGTCCAGCTCAGAGACTTTTTAGTAGAAGAACAAGGACTCTTCTACCAATTACTGACAGTCTTCTGAAGCCAGAAATACGACATACCACAGAAGGACTAAGACTGAACCAGCAACGGCAGGCTAAGTACTACAACCGAGCAGCCAAGGATCTACATGCTCTGAAACAGGGTGATAGGGTAAGAGTCCAGCCATTTGAACAATGGACAGTCTGGCGACCAGCCACAGTAATCAAGCCAGTTGATCACAGATCCTATGAAGTCAAGCTGGAAAATGGTGGTGTCTTGCGGAGGAACCGACGACACTTACAAACAGAAAACATCCCCACTACACCAGTGACTGTTACAAGACCGGCACACACAGATGGACAACAAACAGTAGTTACTAGGTTTGGACGTACAGTAGTTAGGCCTCGTCATCTGAGAGACTACACACAGTAGGGACAAAACtgtaatagagaaaaaaaaaagaggaaaagaaagaaaataaggaaaatattagCATTGAACAAAGACTGTTATATTGTGCGTCTGATATGCAATGCTTAAATGCAGTCtagaagtatatatttttttttatgtttttaattggaaaagATTAGAAGTACATATTTCTCTGGtagttgttttatttgttctatGAAGTTCACTTGGTTGAAATGTAGAATATGTTATGTTTTGAGGTTATTATGGAACCTTCTGTTATTCATGTTGTGTTTTGTAAGCATGTTAATTAACAGTGTAAAGGAActaactgaaaacaaaaacaaaaaaggatgtAACAATATAATGGTTCATGAACTGAAGTTTGTGTTTCAGCACGGACCAGTTAGTGTGACGCACACACTCAGGCAGAGTATATTGAGAGCTGTAGCTGTTAACACACACAAGTGTTCCCGTTGGTTGTCAATcttctaaataaatacaagtaaGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237213 lncRNA upstream 38400 11948808 ~ 11949769 (+) True G175160
TU237210 lncRNA upstream 42274 11945397 ~ 11945895 (+) True G175157
TU237123 lncRNA upstream 86622 11890741 ~ 11901547 (+) True G175085
TU237106 lncRNA upstream 256156 11668901 ~ 11732013 (+) True G175083
TU237096 lncRNA upstream 343721 11644141 ~ 11644448 (+) True G175073
TU237257 lncRNA downstream 72054 12065278 ~ 12069322 (+) True G175201
XR_002651428.1 lncRNA downstream 194019 12187243 ~ 12189381 (+) True LOC111195036
XR_002651429.1 lncRNA downstream 194019 12187243 ~ 12189381 (+) False LOC111195036
TU237304 lncRNA downstream 199781 12193005 ~ 12204954 (+) False LOC103027177
TU237306 lncRNA downstream 199781 12193005 ~ 12204954 (+) False LOC103027177
XM_022681061.1 mRNA upstream 49072 11935660 ~ 11939097 (+) True LOC111195033
XM_007231175.3 mRNA upstream 122253 11750213 ~ 11865916 (+) True LOC103027020
XM_022681054.1 mRNA upstream 654136 11324888 ~ 11334033 (+) True LOC103023833
XM_022681055.1 mRNA upstream 654136 11325247 ~ 11334033 (+) False LOC103023833
XM_007231166.3 mRNA upstream 665834 11250375 ~ 11322335 (+) True LOC103024145
XM_022681537.1 mRNA downstream 97404 12090628 ~ 12095289 (+) True LOC111195107
XM_007241259.3 mRNA downstream 150827 12144051 ~ 12151050 (+) True cnih2
XM_007242409.3 mRNA downstream 198132 12191356 ~ 12192787 (+) False LOC103027177
XM_022681538.1 mRNA downstream 321508 12314732 ~ 12316734 (+) True LOC111195108
XM_007238996.3 mRNA downstream 530917 12524141 ~ 12540201 (+) False rnft1
TU237151 other upstream 74713 11908872 ~ 11913456 (+) True G175108
TU237152 other upstream 74713 11908872 ~ 11913456 (+) False G175108
TU237153 other upstream 74713 11908872 ~ 11913456 (+) False G175108
TU236978 other upstream 551639 11429871 ~ 11436530 (+) True G174994
TU236802 other upstream 968751 10832168 ~ 11019418 (+) False G174874
TU237301 other downstream 198166 12191390 ~ 12192751 (+) False LOC103027177
TU237308 other downstream 198166 12191390 ~ 12209449 (+) True LOC103027177
TU237508 other downstream 746279 12739503 ~ 12745053 (+) True G175379
TU238049 other downstream 1327560 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 1396102 13389326 ~ 13418416 (+) True LOC111195048

Expression Profile