RNA id: XM_022681441.1


Basic Information

Item Value
RNA id XM_022681441.1
length 2946
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC107197579
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33286435 ~ 33297195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGAAGTTACAGAGCGCTCGCTGTTAGGGCTAGGGCCACGTTTTAGCTCCTGCTAACTGTCTCACCTCTCAGTGAAACAGGGAGACAGCTGGGGGTTATTGGAGGATATTTAGGCTTTGTAATGAGACAGGAGACAGGTTATAACTAGGGAGCTAAATTATGTTTTTCCGTGCAGTTGGATCAGAACCGAGGGGGTGGATTTCTGGACATGGCTGTTTGgtGTTCGGTAAAATGAGCTTCACGAAGAACTACCTGGTGAAGAACCTGGTGGATAAATTAAGCGATTTTGACTGTTTGAAGACGTGCAGGCCTCCTCCTCCAGTGAAGCCGCTCAAAATGGATGGAAAATGTGAGCGACACCATGAGGAGCTGAAACTGTACTGCCACACAGACAGAAAACCCATCTGTGTTGTGTGCAGAGAGTCCCGGGCTCACAGACACCATGACGTTGCTCCTGTGCCGGAGGTTGTTGAGGATATGAAGGGAGAGCTGAAGCTGAGGCTTATCAAGCTAAACTGGCAGAAGTCTATGTGTGCCAGAGTCAAGGCCATCGATGAGCAAGCTAAAGCAGATGTCAAGCTGAAGAAGCAGGCTCTGAAAGAGAAGATTGAAGATGACGTAGGGGCTTTGGTCCAGTTCTTGCTGGATGAGAAGGATGGGCTCCTGGAGAGACTGGAGGACGAGGAGTCCTCCACAATAGCGCTAATAGACGAGAACCTTAAGCTGGTAGAAAGCGAGGCTGCTAAAGTGGACAAGGCCATTTCTGATATTCAGAATCAGCTCAGCGAGGCCGGCAACTTTGatAGTATCAGCAAAGCTTACTTAAGcccGAGCCACGTCAGCCTTACTGTGCAGGCAGTGAACTGTCCCCCAGATTATACGGAGTTCACTGGCCCCTTTCAGCTCATTCTGTGGAAGAAAATGATGCATGTTCTTCATACAATGCCCCAAAACTTGACGCTGGACTTGGACACAGCCCATCCGTCCCTGTCCATCAGTGACTTTGATACTAAAGTGGAAGAGGGTCGTGTGCGCTCCCAGGAGCCTGACCTGCCCCAGCGCTTCACACGCTTTTTCGGCGTCCTGGCCACGGCCCGCTACTCGAGCGGCCAGCACTACTGGGAGGTGGACGTGCGGGACAAGGGCGTGTGGTATCTGGGCGTCACCACTGAGTGCAGCAACCGCAAAGGCTTCGTCAACCTTTCACCTTCGGCCGGATACTGGAGCCTGTGTCTGCAAGACCGGCTGTACGCCAACGAAGAGGACTCTCGCGTGCCCGTGGCCGATTACTGGAATTCGCCACGTGTGGGCGTGTTTCTGGACTACGACAGGGGCCACGTCACGTTCTTTGATGCCGTCACCATGAAGCGCGTTTATAATTTTATCGCCTACTTTGACGAGCCCGTGTCACCCTTCTTCAGCCCGGGCAAGAACGACCCCGGCAGCCGAGTGCAAATCTGCCACTTCTACTGAGAGGCCTGACCGTTAGTGGGCAGGGAACTAAAATATAACCGAAATAAAACGTTGGTTATCTCTGTAATAAAACGTTTCCATTCCTTGGAGTCCTCCAGTTCGGAGACTGTAGGGTTTGGCCGTGGTGCAGCTCAGACTGTGACGTTCTTgtttatatgatttaaaaagagCACAGTTGCTCTGCTTCACCCAAATCTGAAGGAATCAGAGCTGGTTCTACTTGTTACTGTTGGATTTACGATGTAGCCCTACTGAAATTCAGGTAGAGATACTTTTTTGCAGGTTTTAAGCGAATAGCAACTCAAAGCTGCTCATAACCTCCGTTTTCACCTCAGTGTAGTGTTGTTGTGTCTTTCACTTTTCAGGTAAAAGTAACAAAAGACTTCTAATCACTTTCAGATGAGAGTTTATACACGCTCTAATTCCGCTTTATATCAGTGGAATGTAAGTGGTTACGTTTTAATAGTATTAGGATTTTCAGTTTTTGCTCAAATGATTTAGGGCATTTTAAGCTTTACACTGAAATAACTTTTTCACCCTCCCTTCAATAATATTTCACATTTgtcctttttatttatgttgaatGTTTCTACTTTGatataaatgaattattaaCAAATAATGTTATACTCAAATATTACACTTTGTGtaactcatttttttaacaGGCTGCACCCAGCTCTGTGCTAAATAGGTCTGTAAGCTCTCTGTGAGTTCCTTTTTACTTCTTTTCTTAAATACCTGAGCTGGAATTGCTGAGACAATTCCATTTAGACATGAAGACTAGTTCAGACTGCACATAGCTATAATAATTTATACATGGAAcaatttttaaactctttattcATCTTAAGCTAAAAGCAATTAGATTAAATATTGTgtgccatttttcattttccttgGGAAAATCTACGAGGTCAGTCTTcatttgcattgtttttaactttatgcttttattttagaatttctGTCTTGGTTATCTTTGTTAAAGTGTCCTGTATTTCAGGCGAAGTACGTTGAAAAAACGAAGACTGATCTTTTTCAGTCACATTTAAAGAAGGAACAGGCTTCTGTGTGCATCCCATCGACTGTAACTCGATTCTGTCCTGAAGTAGTTTTAATTTCCGTTAATGTTGTGTgtaataagaaatgtattcCACTTTATTCCTGTTTTTAGTAACTCTTGTTTCTGACCTGACAGGATGATGAATTCTGAGCTGGACTGTGATTTTTGACCGCGTGCTTCAGGTCAGAATAGATTCTGGATCTGTGTGCTCTGAGTGTGCTCTTGtgaggtttctttttttttatgccttTTGACTGATAATCTAAGATGTTTGTTGCTGTTGAGAGATCATATGATGAGATTAACATTTGTGTGGTTTGTTAATGTAATAACTACTGCAGTATGTCAAACCTTTTATTTTCCACAGTAATACATTCATTTGGGAAATAAAATTTGATTGCtggc

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244781 lncRNA upstream 3713 33281657 ~ 33283041 (+) True G180726
TU244777 lncRNA upstream 5827 33253282 ~ 33280927 (+) True G180722
TU244758 lncRNA upstream 179951 33106586 ~ 33106803 (+) True G180710
TU244756 lncRNA upstream 180220 33106183 ~ 33106534 (+) True G180708
TU244746 lncRNA upstream 227712 33057950 ~ 33059042 (+) True G180698
TU244791 lncRNA downstream 17315 33314510 ~ 33314931 (+) True G180734
TU244804 lncRNA downstream 76379 33373574 ~ 33395329 (+) True G180746
TU244884 lncRNA downstream 169375 33466570 ~ 33466780 (+) True G180804
TU244888 lncRNA downstream 217327 33514522 ~ 33539422 (+) True G180807
TU244907 lncRNA downstream 301153 33598348 ~ 33599355 (+) False G180826
XM_022680728.1 mRNA upstream 11068 33109991 ~ 33275686 (+) True LOC103028331
XM_022681440.1 mRNA upstream 218822 33050242 ~ 33067932 (+) True ufm1
XM_022681434.1 mRNA upstream 577500 32704931 ~ 32709254 (+) True LOC103036259
XM_007247311.2 mRNA upstream 595270 32687753 ~ 32691484 (+) True LOC103029275
XM_022681432.1 mRNA upstream 636422 32643512 ~ 32650332 (+) True LOC111195090
XM_022681445.1 mRNA downstream 561481 33858676 ~ 33905991 (+) True synj1
XM_022681450.1 mRNA downstream 561481 33858676 ~ 33905991 (+) False synj1
XM_022681452.1 mRNA downstream 561481 33858676 ~ 33905991 (+) False synj1
XM_022681449.1 mRNA downstream 561481 33858676 ~ 33905991 (+) False synj1
XM_022681448.1 mRNA downstream 561481 33858676 ~ 33905991 (+) False synj1
TU244438 other upstream 1012956 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 1852845 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 2135659 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 5761313 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 5761365 27524318 ~ 27525389 (+) False LOC103038954
TU245165 other downstream 875764 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 2518840 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 2518844 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 2533486 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 2909372 36206567 ~ 36207895 (+) True G181734

Expression Profile