RNA id: XM_015607071.2


Basic Information

Item Value
RNA id XM_015607071.2
length 5588
RNA type mRNA
GC content 0.53
exon number 9
gene id grin3a
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21932331 ~ 21964708 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTCGCTCGCGCTGCcaaacatttgcacagtgcGGGTGCCACCGTGGGAGTTCATCAGGGGGACGCCCGCGCGCTCTTCCCGGACGGATTTCCGCGGCGCTTTGGATTACTCTTGTCCAGCTTTTCAGTCCGCTATTCTCGTGCGTAAAGAAATGTCCTGCGCGGCTGGGGAAGATGGATCGTGACGCGCGAGGACGGAGCTGAGCCGCGAGCGCGGACGCGGTGCAGTTTGGCGCTGATATTGTTTTTCtattactcttttttttgttgttgttctgttAGCTTTTTTTGCGCTTGAATCGGAGGATGCAAACGCTTTTTGTTGCGCGCTGCTGCGGCGTTTTGCACGCGGCTGTTTTTGCGCATTTGGCACACGGGCGAAATTAATGCTTAGAATAAAATTTAAACCGCAAAAaattatgtgattttttttttatcatttctgcAAAGAGATGCAAAACGACGCTGCTTTTGAGCACACGTGCAGCGCGCGCGCGGAAATACTCTCGGCAACTTTAGTTATTCTctgttattgtttttcttttttttctttttttggtctttctcttttttgcacGGAGGCGCACCGAGGCGAACGAACCGAGGTGCGGACGGCGGAGCTGCCGGTGTTTGGTTGTTGCTTTGCTCGCTTGGACCCCCGGCATCTTGGCCGCTGGGGACGTCGTGGTCGTTGTGGACGTCGTGGTCATCTTTTTTTCCCACCGCCCTCCCTTCCACATTTCTGGCTCGCGCTGAGCAATGACGGCTCGCGGGCTCGCGCTGCtggccctgctgctgctgttggtacCCTTCCTCGTGCTCCTTCTTGCCCCCGCCACCTGCCTCGCGCACCCGCAGCCGTGCCAGGTGCTCAAGCTCGTCGGTCACACGGTGCGTGTCGGAGCCTTGCACCTGCAGCCGCGCGCGCTCCGGCATCAtcaacagcagcaacaacagtatcagcaccagcagcagcatcagtcgCAGCATTCTGCCGTTCCCAGGAGGAAAACTTTGGACCACGACTGGGAGCGGGACTGGGACCGCGACTGGGAACGGGACTGGGACCGAGACCTGGAGTCGGGGGTGGTCGCCAGAAGCGTGAACGAGCTGGGCGCACGAGCCATCAGGGGTAGAGGCTCGAGCCACAAAGGCGCGAAAAGTAAGAACGCACTCAAACAAGTGGAGTCGGAGAGCGCGTTCCTGCCCCGGGACTCCATTCTGCTCGCCACCGAGACGCTCAACCGCCTGCCCGGCCTGCTGCCCTACAACCTGTCGCTGGAGATCGTGATGGCGGTGGAGGCTGGTCTCGGGGAGCTGCCGGCCTTCTCCTTCCCGTCCTCCTCCTCACCCTCCTCCACCCCGGCCTGCACCGACCCCGTCTCCTTCCTGCACAGCGTCTGCCACACGGTCATCGTCCAGGGGGTCTCTGCCATCATGGCGTTCCCTCAGAACAGGGACGAGTTGGTCAAGCTGGAGTTTATCTCGACGTCGCTTCAGATTCCGGTCGTCAGCGTCGTTCAGAGGGAGTTTAGGCGACAGAGTAAGAACGCCCTCCACTTCCAGATGGCCATGATGAACCCCCCAACTCCTCAGGCTGAACTCATCTTCTCCCTCCTGTCCATCAATAACTGGTACGACGTCAGTCTGCTGATGTGTCAAGAACTGAACGTCTCGCGCTTCGTCTTCCTGCTCCGCAACAACACCAAATTTCACCTGGGGTCCATGGTCAACATCTCCACCAACTCCAGCAACAAGGGGGACTTCCAGACCACCCTGCAGGGCCACCTGGACTCCATCAAGGACTCCACCTCCACCATCGTGACGTTCGGATGTGATATTCGGGACATAAAGAGGATCTTTACCACGGTGCTGAAGTTTGGGTTGATGCTGCCTGACTATCACTGGATTTTAGGCGATTCCCAGAACGTGGAGGAGTTAAGGACCGAGGGGCTGCCGATGGGTCTGCTCGCACACGGGCGAATGAGCCAGCCCTCCCTGGACCACTACGTCCAGGATGCTTTGGAGCTCGTGACCAGAGCCGTGGGGTCTGCTGCCATGGTCTCTCCGGAGCTGGCGCTCATCCCTGGCATCACAAACTGCATGGCTATAGAGGAGAAGAATCTCACCTCAGGAAAATATCTGTCCAGattCATGGCGAACACGTCGTTTGATGGACTTAGTGGCTACGTTCACGTTCGAGAGGAATCTACCGTTATCTCCGAAAGCCATCACTTCATCTGGAACCTGCAGCACGACCCCATCGGGAACCCCATGTGGACCCGGCTCGGGTCTTGGAAGCAGGGGAAGGTAGTGATGGACTACGGCGCCTGGTCCACCAACAGACAGTCCTACCCTGGAGGCGACTGGAGGCATTCCTCGAGGCTGCACTTGAGGGTTGTCACCCTGGTGGAGCATCCCTTTGTGTTCACCCGAGAAGTGGACGATGATGGGCAATGCCCTGCAGGGCAGCTTTGCCTGGATCCGCTAACGAACAATACGGCGCTACTGGAGAGCCTCTTCCAGGGCCTTCAAGGGGGAAACGACACCGTTCCAATGGAGTTTAAGAAGTGCTGCTACGGCTACTGCATTGACCTTCTGGAAAAGCTAGCCGAGGACATGGGCTTCGACTTCGACCTCTACATTGTCGGGGACGGAAAATACGGTGCCTACAAGAACGGCCGCTGGACCGGTCTAGTAGGCGACCTCATGAGCGGAGCGGCACATCTGGCGGTCACCTCCTTCAGCATCAACTCTGCTCGCAGCCAGGTGATCGACTTCACCAGCCCCTTCTTCTCCACCAGCTTGGGCATCCTGGTCAGGACTAGAGACACAGCTGCACCAATCGGAGCCTTTATGTGGCCCCTGCACTGGAGTATGTGGCTTGGAATATTCGTGTCCCTGCATGTGACCGCAGTGTTTCTGACCCTGTACGAGTGGAAGAGTCCTTTCGGGATGACGCCGAAGGGACGGAATAGGGATCGCGTCTTTTCCTTCTCCTCAGCTCTTAACGTTTGCTACGCCATCTTATTCGGAAGGACAGCCGCCATTAAGCCGCCAAAGTGCTGGACGGGCCGTTTTCTCATGAACCTCTGGGCTATATTCTGTCTGTTTTGTCTGTCTACATACACGGCCAATCTCGCTGCCGTAATGGTCGGGGAAAAAACTTACGAGCAGCTCTCAGGTATACACGATCCGAAGCTCCACCATCCATCACAGGGCTTCCGGTTCGGAACAGTGCGAGAGagcagtgctgaggattatgtgAAAAAAAGCTTCCCAGAGATGCACGAATACATGAGGCGCTATAATGTCCCTACGACCCCCGATGGAATAGACCACCTTAAAGCTGATCCTCAGAAACTGGACGCTTTTATCATGGACAAAGCCCTCTTAGACTATGAAGTGTCCATTGATGCTGACTGCAAAACTCTCACAGTGGGGAAGCCATTTGCAATTGAAGGCTACGGCATTGGTCTGAAACAGAATTCCCCTCTGACTTCAAACATCTCAGAGCTGGTCAGTCAGTATAAGTCAGATGGATTTATGGACATGCTTCATGATAAATGGTATAAAGTGGTGCCCTGTGGTAAAAGAAGTTTTGCAGtcacagagACGTTACAGATGGGGATCAAACACTTCTCAGGGTTATTTGTAATGCTCTGCGTGGGCGTGGCGCTGTCTCTGCTCACCACCATTGCTGAACACATCGTCCACCGCTGGGTGATCCCCAGAATGCAGAACAAGCCGCAGTACCAGTACTGGCTTCACACCAGTCAGAGATTACATCGAGCACTTAACCCGACCTTCAGCGAAGACAAATTAGCCACTGTGGCGAAACCAGAAAAAAGGTGCAACATCGGGAACAACCAGCAGCCGCTGTGGAGCACTTCAGAGAACTCCATCTGCACCCGGCGGCATCCGTCCAACCAGGAGGGGCAGCAGAACGACTTGGAGTGTTTACAGTGCAAAGAGCTCTCGCTCCCGCCCCCGCCGGTGAAGAGACAGCTTCCCCTGCAGGCCACGTCCAACGGGAAAACGGACCTGCTGGGCCTGGCGCGCAACCCCATAGTGCAGGAGCTGACGGACCTGGAGTCACAGATCCAGATCATCAAGCAGCAGCTGCAGATAGccatgaagaagaagaaagagctGGAGCAGTATCAGCAGACAAAAATGGCAAGTGAGCCCTAGAGCTTCCGGAGCTCTTTTTGTGGCCGGACTCTCGTGTGCACTTTTCTCGTGCAGCGCTCGGAGACTCGGACCTAATGGCGGATTATCGCAGATTCGCTTCCTGAGGGAGTGAAGCGGTCTCAGTGTGTACCTCTGCACATCTTTTTAAAAAGGCAGCGTTATTTTTCTCTATTGATTTCTTTGGAATTCACACTGGACTGACCAAATGCTGCTCTGAATATGTGGGAGAGGATGCTAATGGATAAGAGAgtcaaagggttaaaaaaaaggcCGATTTATACTTCTGCACCAAGTCAATCTGTGTAGTTGAGTTGCATTGGGCATCAATTGCACCAATAAAACCCTAGACTAGGGGTTGGCAATTAAGTTTtgccgcgggccagatattttccaagccattacgtggcaagccacaaaaaaaaaaaatctgttttggaaaatgaagtgtaatgggacgAAGCACTACAGACTAGAAGCACTACTGGGCTCTCCAGCCCAgtagggttgttgaacccaattgcagaacagctgacctcaaagcaggtaaacccaagaagaaaggaataaataaataaacacaccgctcctcacgcaggatcgaacccgtgtcttCAGGGtcatggtccaatacactatcacTGACCCAGCTAGTGAACTGAGACAAAATATAAGCCTTTATAAGGAGAAAGAgagcccaagaacaggcggaaaaacatgaacgggcggaaactaaagtcacaccgagtgcgacagagagagaggggaggaatgtaaacaaaagctcgccagagaagcattttatttattttttattttttcattatcgttcattatagttcaaacaacctcacgggccagatgttgcAAGCTCCTGCAGGCCACCTATTTTTATGTTGCCGACCCCTGCACTAGGCGAAGACGGCAAAGATGGCAAAGAATgaaatttttgagatgcacctgaaTTTCTTATCCTAGGAAAAACAAGTGCCAAAAAACCTTCAAAGAACTTTccttaatttagattttttcattatttctgaaCATATCAATCCTCCCTATTACATTAATGCAACACAGATTTGAAGCAGAAGCATAAATCGGCCCTCAGGAACCTGGATACGGCCAGCATCCCCCAGAGCTCTACTTTCACTGgtactgtagtgtgtgtttttgtgcggGACTGTCCGAGGGGGGAAGATGCTCTGTGTATCAAAGCGACAGGTGTTTATTTATGGTGTCACAGTGTGAAGTGTATGGTAGCACCTCCTGCATATTGATATAATGCGCTCCACCGTTTTATAGAAGAAAGCATGATTGCTGCCTCTCGGTTTGCGACGGGGGAGTCTTTACTGTCAACTGCTAAAGGGTTCCCGGCCTGTTCATTAAAAAAGCT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05213 GRIN3A; glutamate receptor ionotropic, NMDA 3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241453 lncRNA upstream 232698 21699433 ~ 21699633 (+) True G178233
TU241422 lncRNA upstream 385363 21540577 ~ 21546968 (+) True G178202
TU241284 lncRNA upstream 667347 21237139 ~ 21264984 (+) True G178105
TU241287 lncRNA upstream 973848 20931781 ~ 20958483 (+) True G178108
TU241271 lncRNA upstream 1210940 20721073 ~ 20721391 (+) True G178097
TU241476 lncRNA downstream 8006 21972714 ~ 21973034 (+) True G178254
TU241500 lncRNA downstream 134611 22099319 ~ 22099558 (+) True G178278
TU241502 lncRNA downstream 135332 22100040 ~ 22101283 (+) True G178280
TU241504 lncRNA downstream 138041 22102749 ~ 22103046 (+) True G178282
TU241522 lncRNA downstream 348462 22313170 ~ 22314294 (+) True G178289
XM_022681245.1 mRNA upstream 563057 21326212 ~ 21369274 (+) False musk
XM_022681242.1 mRNA upstream 563057 21336677 ~ 21369274 (+) True musk
XM_022681243.1 mRNA upstream 563057 21336677 ~ 21369274 (+) False musk
XM_022681244.1 mRNA upstream 563057 21336677 ~ 21369274 (+) False musk
XM_022681246.1 mRNA upstream 563057 21336677 ~ 21369274 (+) False musk
XM_022681248.1 mRNA downstream 162413 22127121 ~ 22315307 (+) True LOC103046694
XM_007254085.3 mRNA downstream 358012 22322720 ~ 22334543 (+) False LOC103047607
XM_015607076.2 mRNA downstream 358133 22322841 ~ 22334543 (+) False LOC103047607
XM_007254086.3 mRNA downstream 358289 22322997 ~ 22334543 (+) True LOC103047607
XM_007241062.3 mRNA downstream 456654 22421362 ~ 22453611 (+) True sec31a
TU241070 other upstream 1792767 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 1838469 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 2156540 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 2209942 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 3388334 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 284436 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 495684 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 495684 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 497283 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 522115 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile