RNA id: XM_015607367.2


Basic Information

Item Value
RNA id XM_015607367.2
length 6644
RNA type mRNA
GC content 0.48
exon number 20
gene id map3k1
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22696309 ~ 22764412 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTTTATTGAGTAACTGAAAGGGCCAAAGGGGTGCACACCATCGATTCTGTGCTTAATTAAGGATGGACGCTGGCCACGGCTGGCCTTCCCCCGTCCCTGACCGCCCTAACATGTGGGCAACTGGAGCCAAATGGGTGTCGTGACATGGAGAACAAAGAGACGCTGCGTGGGCTGCAGAAGATGGAGGACCGGCCAGAGGAGAGAATGATCCGCGAGAAGCTGAAGGCCACCTGCATGCCCACCTGGAAACATGAGTGGCTGGAGAGGAGGAACAGGAGAGGCCCTGTGGTGGTGAAGCCGGTTCCCTTGCGACCAGATGGCAGTGAGGCCGGTAGGCAGGGTCCTGAATCCAGCAGCGACAGTATGAATTCTTCTTCCTCTCAGAGCCGGGGCCGACGCAGCCCATCACCAGGACCCTCCTCATCCTCCACATCCTCCTCATCCACCAGAACCAGCAAGCCGGAGTCACCCGGTGTCAGAAGGAAGAGGGCATCCCCAGTTCCTTTCCAGAGTGGCAGGGTGACGCCCCCTCGTCGAGCTCCTTCACCAGACGGCTTTTCGCCTTACAGCCCAGAAGAGACCAATCGCAGGGTTAACAAAGTCATGAGGGCCCGTCTCTACCTGCTCCAGCAAATAGGACCTAATTCCTTCTTGATTGGAGGCGACAGCCCAGACAACAAATACCGTGTGTTCATTGGTCCTCAGACCTGCAGTTGTGGTCGAGGGGCCTTCTgcatccatgtcctttttgtcaTGCTGAGAGTCTTCCAGCTGGAGTCTTCAGACCCTCTTCTCTGGAGAAAGACCCTGAAGAACTTTGAGGTGGAAAGCTTGTTTCAGAAGTACCATAACCGCCGGAGCTCTCGGATCAAAGCCCCGTCTCGCAACACCATCCAGAAGTTTGTTTCCCGCATGTCCAACTCCCACACAAACTGCACCTCCAGCTCCTCGCCATCCAGCAACGAGAGCAGtatgAAGGACGAAGAAGAGCAGATGTGTCCAATCTGTCTGCTGGACATGCTGGATGAGGAGAGTCTGACTGTGTGTGAAGAAGGATGCAGGAATAAGCTGCACCACCACTGCATGTCTATATGGGCCGAAGAATGTCGGAGAAACCATGAACCCTTAATCTGCCCTCTGTGTAGGGCTAAATGGAAGTCTCACGACTTTTACAGtcaTGAACCAGCATCTACAGTGGAAAGCTCTACAAGTCGCTCCCAGAGCCAGGTACCTTCATCCGCTGCTTCTTCATCATCGCCACATGCTGAAGGCCAGAGGGCGTCGCAGGAGGGAGACTTCTCCCTGCCCCACTACGGAGTGCAGCAGATCCCTCAGACCTACAAAGAGCTGGCTGAGCCTTGGATCAAGGTGTTTGGTATGGAGCTGGTGGGTTGCCTCTTCTCCCGGAACTGGAATATCAGAGAAATGGCACTCCGCCGGCTGTCGCACGATGTGAGCGGCGCTCTACTGTTGGCTAATGGCGAGCGCTCTTTGGCGAGcgcaggtgctggagcagggGCGGGGCTTGGAGCAGCAGGAAGTGAAGTCTCAGGGGATGTGGTGGTGGAATCCTGCTGCAGTGTGCTCTCCATGGTCTGTGCAGACCCAGTCTACAAGGTCTACGTGGCTGCACTGAAAACCCTGCGTGCCATGCTGGTGTACACGCCGTGCCACTCTCTGTCGGAGCGCAGCCGCCTGCAGCAGCTGCTCCGGCCGGTGGTGGAGACCATCTTGGTGAAATGTGCCGACGCAAACAGTCGTACCAGTCAGCTGTCTGTGTCCACACTACTGGAGCTCTGCAAAGGGCAGCTAGGAGAACTGGCTGTGGGTAGAGAGATCCTCAAAGCTGGATCTATTGGCATCGGTGGAGTGGACTATGTGCTGAATTGTATCCTGGGCTCGCAGACTGAATCCAATAACTGGCAGGCTCTGCTGGGCCGCCTTTGCCTGATCGACAGACTGCTGCTGGAGTTCCCAGCTGAATTCTACCCTCATATTGTCTCAGCCTCAGACTGTGGACAGCCACAGAACCAAGTGGAGAGGTACGGGTACCAGAAGCTGCTGCCTTTGCTAAGCTTTGCGCTGCAGTCTATCGATAACTCTCACTCCATGGTGGGAAAGCTCTCTCGCCGTGTGTTCCTGAGTGCTGCCCGCATGGTGGCCCGCGTGCCTCATATCTTCGTCAAACTGCTGGACATGCTGAGCGTCACCAGCTCCACCCACTATGCCCGCATGCGCCGCCGCCTTCTGGCCATCGCTGAGGAGATGGACATCTTGGAAGCCATCCATCTGGGCCTGGAAGACGCGCAGATGGCTCCTAGTCAGCACTGCGATGCTTTTCTGGAGCCTTCAGCACCTCACAATTCTCCCATTACCACAGAAAGAAACTCGCCCACACTCGGCCTGCAGCAGCTCGCCAAGGCGGGGCGAGGGGGCATGGCCAGTGCCAAACCTGCAGATGAGATTGCAGACAGGCTAGCAGCTATCAcaaccaccagcagcagcagcaacagctatGCTGACCAACCAAAGCCACCAGTCCAGCTACGTCCTAGACCTATGAGCCAGTGTCTTAATTCACCCTCCTCAAGCCAAGCACCCACCTTACCCTCGCCCTCCACTTCCCACGCCCCAGCTTTTCCTCCTGACAACCCCAAAGCCCGAGCGCCAGGTTTCGTTCTTGGCAAGTTCACCCAGTCTTCCCCTGGTGCCCAGCGCAAGTTCCCTATACAGAAGGGTGGGACTTGTGGCGGGACTAAtaaagacctagaaaagttacCTTCACCCGTGTTCCCCCCATCCAGACCATTGCCTCCCACCCAGGTCCACAGACCCAGACCCTCCAGGCCCTCACCCTCTGCCTCTTCCGAATGTGGTGCTAAAGCTTCTTGCTTAGGTGCCAAGAGCAACATGAAGCTCGATCTTCAGGACCACCAGCCAATGGACAGCACGAGCACTGTGTTTGTACCCAGCGATGATGCTGTTTTCACCCCTGTGGAGGAGAAGTTCCGCGGCCTGGATGCTTCCGCCGAGCTCAACTCCAGCATGGAGGACCTTCTGGAAGCCTCTATGCCGGCAGCGGACAGCACCGTGACCTTCCAGTCGGAGGTGGCCGTGCTGTCTCCAGAGCAGGCTGGCATGAGTGATGACGCCTACAGTGAGGACATGACGCAGAACCAGAAGTGCAAGGAGAAGATGGaggctgaggaagaggaggcGCTGGCCATTGTAATGGCGATGTCCGAATCCCAGGATGCCCTGCCCATCATCCCGCAGCTGCAGGTGGACAAGGGAGAGGACGTCATCATCATTCAGGTGGATACTCCAGAGACTCTGCCTGGGCATACCAAAGCAAAACAACCCTATCGTGAAGGTGCGGAGTGGCTGAAGGGTCAGCAAATCGGCCTGGGAGCATTCTCCTCATGCTACCAGGCACAGGACGTTGGCACTGGAACGTTAATGGCAGTGAAACAGGTGACGTATGTAAGAAACACATCCTCAGAGcaggaggaggtggtggaggcTTTGCGGGAGGAGATCCGGATGATGAGTCATCTCAACCACCCCAACATCATCCGCATGCTGGGCGCAACCTGCGAGAAGAACAATTACAACCTGTTTGTGGAGTGGATGGCAGGTGGCTCCGTATCTCATCTCCTGAACAAGTACGGGGCCTTTAAGGAAGGCGTGATAATCAACTACACTGAGCAGCTGCTCAGAGGCCTGGCCTACCTCCATGAGAACCAGATCATTCACCGCGACATCAAAGGTGCCAACCTACTGATTGACAGCACAGGCCAGAGGTTGCGGATAGCAGACTTTGGAGCAGCGGCAAGGCTGGCCTCCAAGGGCACGGGTGCCGGCGAGTTCCAGGGCCAGCTCCTGGGAACCATTGCCTTTATGGCCCCTGAAGTGCTGAGAGGACAGCAGTATGGCCGTAGCTGTGACGTGTGGAGTGTGGGCTGTGCCATCATTGAGATGTCCTGTGCCAAGCCCCCTTGGAATGCTGAGAAACACTCTAACCACTTGGCCCTTATATTCAAGATTGCCAGTGCCACCACAGCACCCACAATCCCCCCACAACTGTCCCCAGGCCTAAGGGACGTCACCCTGCgctgcctggagctgcagcctgCTGACCGGCCCCCGTCCAGGGAGCTGCTCAAACACCCCATCTTCCGCCTCAACTGGTAACAACCCGGAGCGACCACGCAACCTGCGCAAtactactactctactactactactactgctactattactactgaaGGCCTGTATGGCCTGTACCCTCTCACTGCTGTCATCTCCTCCTCAGCACTAGCACTAGCTCAgccagacatacacacacacacacacacacacacagtggggtCCTTACTGCTGTAACCACAGCACATAATGATGCAAGCCCATACTGTCCGACTTCCCTGCGAGTGCCTTTACAATAGTGCCATGTCCTGATGCTTCGTTATACTGGGTTTTTATGTGGTGAGCGCTTCTCTCTgcacatttttgttgatttttccaTCACAGAAAGGTGCTGAAGTCAAATGTTTGTTACTACGGTTGTTTCAGTTCACACAGATTTCAATGTCTAAGCGGACCTCTGTGAGCGAAATCGTTCATGTTAAAAGTAAAGGTTCAAATTAGCGATATCTCTGTTTTAACTGGtcgcatttaaaaaaaaaatctctcattTGTTACTTTATATTGTGCGTTTTACTGTTGGGCCTCATGTTTTCTTTCATACAATGTTAAACACCATGAACGGGTTTCAGGGAAAGGTAATTTTTGAAACTTGGCTAGTTCAGCTAGCGTAATGCTGAATGTGAATACTTATTATAATGCCGGTATTTGTctcaagttttgttttttagttttcctCCAAATCTCAATGGAAATCCcatgtataaatgtatgatttttatCATTCTAAGGAGTAACGGATACGTTTATTAGCTTTCTGGGTGTCACTGAGATTCAGTTTTGGGCTTTCCTTTGGCAAGAActagcaaaagcaaaaaaaaaaaaacggctttTGAGGAAAGTTTTAAGACGATGTCTCAGTAGGACACCCTCACTGATCtctttacttttaaatgttACGTTAAGGAAAGGTTGTGgttcttttcttttgtcttgtttttttattttttcagtaaatgagcCTTCTGCTAAAGCTGTTTTGTTCAGAagcattttggacagttttcccCCTCCtgagttgtttttgttttcttttttgtttggtgctgttcatttttgtgctaattatcagattttttattttattttaatttaatcaagATCCATTTCAGTGATTCCTGTAAGAGAATCTCCAGTACTTGTTTCAAAAGGATCAGTGTCCACCTGAGCATTTCTGCTTCACCTCatggtgttttttctttgtaatgAAAATGAATGCTGTTGACCATTTTTGGTGGCGGGATATAACTGATCTTATATTAATGATGCCTTTCCTTCTCAtttatgttgttcttttttGAGATAAATCTGCTCTTTTCTCTTTGATTAGAAATGATGTTGAGCATGTTAATTGTATGAACTGTAACTCTTCAAGTGTTCTACTTGTAATCAGTGAAAGGAAGATAaggattatttttaaaaaatccaaaacatttGCAAAATATGCATCACAGAGCTAATGTCTGAACTCCCTTCGCTCAGACGAGGGGAAGCGACGTCGACAATTTGTGACAGtttaaagattatttttaaaggaaaaatgaaactttatttaatacGAGTCCTAATGCTTTGTGTGGAGTACAAGCTGATCAGGCTTGAAGAGTTaagatgtaaatatatatgaatttttggtagctaaatttattttacttgacTCCTGTATTTTTATACCACACCTTTTTtccataaatacatatttttgttcctgctttggatttattttacttttatctttcttttcaaTGTCTTTGTAAAAGCTTTAAAGTTATGcactctttgtcttttttatatacTGGAAAAAATCAGTTTCAGTCAAATTCATAAAAGCTAATCAGTATTACTTAAATATGTCATGCCTGTAATTCGAGTTTTCCAATTCTCTTCTggtctgtattttattttattttattacttttgttcTTTGTATCTTACGCCCTTTTTGGATCAGAGCTGGACTGAAATTGTGTGAAATAATGCTGTTTCTTGTAACTTGGTACTTTTCTTCCCATtctcctttttgtttttgttctattctttttttgtttaaaataagtctattgctgttttattccagTCTCTACTACCTCAGGTGTCCTATAGAGTTTTCCTCTACCAAAGTTCACtttctcaatatatatatataattatatatataaatatatattcttttttgactgttatttgtttttcctttctttttcaaAGACTTCCAGGGCTTAAGGGCTAACTTATATTAGCACCTTTTTATTGTGCAAATAAACTCATGAAATCTCTGGgttaagaaaaatgaaaaattggcTTAAGCTGTATCCTTTAATCTTAAGTATATTGagatgttttaattattaaagtttTTACCCCATTTGAAGCATTTTATAACAAATTTGACTTATTTTGGTGTTCgtctttagtaaataaaaaatgggaaaatgg

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241745 lncRNA downstream 148329 22511049 ~ 22547980 (-) True G178436
TU241753 lncRNA downstream 169398 22519464 ~ 22526911 (-) True G178441
TU241750 lncRNA downstream 172700 22515661 ~ 22523609 (-) True G178440
TU241751 lncRNA downstream 172700 22515661 ~ 22523609 (-) False G178440
TU241752 lncRNA downstream 172700 22515661 ~ 22523609 (-) False G178440
TU241772 lncRNA upstream 24364 22749513 ~ 22750079 (-) True G178452
TU241851 lncRNA upstream 145009 22870158 ~ 22880309 (-) True G178505
TU241872 lncRNA upstream 183643 22908792 ~ 22913269 (-) True G178521
TU241883 lncRNA upstream 204960 22930109 ~ 22930968 (-) True G178528
TU241859 lncRNA upstream 210357 22935506 ~ 22940533 (-) False LOC111195067
XM_007255286.3 mRNA downstream 2377 22679197 ~ 22693932 (-) True LOC103042817
XM_022681260.1 mRNA downstream 3848 22682449 ~ 22692461 (-) False LOC103042817
XM_015607372.2 mRNA downstream 3864 22679197 ~ 22692445 (-) False LOC103042817
XM_007255285.3 mRNA downstream 3868 22679197 ~ 22692441 (-) False LOC103042817
XM_022681253.1 mRNA downstream 24458 22581421 ~ 22671851 (-) False LOC103043437
XM_007255278.3 mRNA upstream 155975 22881124 ~ 22897545 (-) True LOC103040684
XM_022681259.1 mRNA upstream 174327 22899476 ~ 22907374 (-) True ddx4
XM_022681266.1 mRNA upstream 211409 22936558 ~ 22940511 (-) False LOC111195067
XM_022681268.1 mRNA upstream 220012 22945161 ~ 22957202 (-) True sh2d4a
XM_022681269.1 mRNA upstream 220012 22945161 ~ 22957186 (-) False sh2d4a
TU241770 other downstream 23626 22672132 ~ 22672683 (-) True G178450
trnam-cau_39 other downstream 159810 22536428 ~ 22536499 (-) True trnam-cau_39
trnar-ccu_33 other downstream 159975 22536262 ~ 22536334 (-) True trnar-ccu_33
trnam-cau_38 other downstream 160054 22536184 ~ 22536255 (-) True trnam-cau_38
trnam-cau_37 other downstream 160810 22535428 ~ 22535499 (-) True trnam-cau_37
XR_002651463.1 other upstream 210341 22935490 ~ 22940511 (-) False LOC111195067
TU241888 other upstream 227537 22952686 ~ 22957226 (-) False sh2d4a
TU242520 other upstream 2405833 25130982 ~ 25134156 (-) True G178982
TU242660 other upstream 2479680 25204829 ~ 25207353 (-) False LOC103025094
TU243326 other upstream 4715082 27440231 ~ 27443316 (-) True G179569

Expression Profile