RNA id: XM_022680682.1


Basic Information

Item Value
RNA id XM_022680682.1
length 1408
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC103038343
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8216792 ~ 8223333 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGCAGCAAAACCTGAGCAGCATCATTTTCTGGAAAGAGAAGCAAGATGAAGGCTTTCTATCAGCTCTGCGTTCTGATTGGCCTGGTTCTTAGAGCCCAATCTGGTCCAACGCCAGCAACTACTGGCAAGGAGGAGAAGGTTTTGACTCTGAAAGTGACGGGAAACTGGGACGCTGAAACGCTGGAGGTGATGAGGGAGCCTCAGGCTGTGGCTTCAGGTGATTCTTATAATGTGGCTCCTGACGTCTACAAATGGCCGACCAACCAGCTGACCTACAGGATTGAGAGCTACACTTCTGACATGTCTCAGGCCGAGGTGGACAACTCCATTGCGAGAGCTTTCCAGGTCTGGGCTGAGGTCACTCCCCTCAGGTTCACTCGCATTTACAGTGGAGTAGCAGACATCATGATTTCCTTCGTTGTTGGAGATCATAGTGATAATTCCCCATTCTCAGGACAAGGTGATTTTGTGGCTCATGCCTTTTTCCCATCTCCTGGCCTTGGGGGAGACATACATTTTGATGATGAAGAGACCTTCAGCTTCTCATCCTCTCATGGATACAACTTGTTCCTGGTGGCGGCCCATGAAGTTGGACATGCCTTGGGTCTTCACCACACCACGGATCCTGGTGCTTTGATGTATAAATTCTACAGCTCTAGAAACGCTGAGAAATTCATTCTGCCCCAACATGACGTAGATGCCATTCATGCTCTCTATGGCCCAAACCCAGATAAACCTGTTGACCCTGAGAAGCCTGAACCTACACGTCCAGTCACTCCTAATGCCTGTGACTCTAACCTGGTTCTGGATGCCGTTACAATGCTGCGAGGAGAGATGCTCTTCTTCAAAAAGGGTCTCTTCTGGCGAACTCAACCATTCAACAACCAGATTGAGCAACATCTGATCCAGAGCTTCTGGCCCGGGGCTCCAGAGAACATTGACGCTGCTTATGAGAATCCATCAGATGACATGGTGTACCTCTTCAAAgGTCAGAAGGTCTGGGCTCTCTTTGGATATGATATCGTACAGGGTTATCCCAAAACCCTCCAGAGCATAGGACTTCCTGCTAAACTCAAGAGGATCACCGCTGCTCTTTATGACCACGACACTGGCAAGGCACTGCTCTTCTCTGGAAAACATTACTACAGCTATAATGccatcaagaagaagatggacaAGGATTCCCCTAAACGTGTGGATGACCTCTTCCCTGGAATGACCACCAAAGTTACAGCAGCGTTTCAGTACAGAGGTTTCACCTATCTCTACAGCGGCTCACACATGTACGAGTTTGATACAGGAGCGAGAAAACTCATCCGTGTGCTTAAAAACAACTACTTCCTGCCATGCTGATCATTCTGTATCACTCTACACCTGCCACGCAGAAAGTGGCACACAAGTCCCTT

Function

GO:

id name namespace
GO:0048246 macrophage chemotaxis biological_process
GO:0009790 embryo development biological_process
GO:0046872 metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236008 lncRNA upstream 50130 8158038 ~ 8166662 (+) True acer3
TU235966 lncRNA upstream 151991 8006273 ~ 8064801 (+) True G174263
TU235944 lncRNA upstream 312950 7902800 ~ 7903842 (+) True G174255
TU235949 lncRNA upstream 324229 7883716 ~ 7892563 (+) True G174256
TU235839 lncRNA upstream 544932 7667401 ~ 7671860 (+) True G174176
TU236120 lncRNA downstream 6975 8230308 ~ 8230617 (+) True G174366
TU236172 lncRNA downstream 275122 8498455 ~ 8498951 (+) True G174408
TU236202 lncRNA downstream 339177 8562510 ~ 8562865 (+) True G174424
TU236222 lncRNA downstream 432191 8655524 ~ 8658542 (+) True G174438
TU236379 lncRNA downstream 869108 9092441 ~ 9094096 (+) True G174559
XM_015604663.2 mRNA upstream 7507 8188729 ~ 8209285 (+) True LOC103041846
XM_007244737.3 mRNA upstream 18631 8195096 ~ 8198161 (+) True LOC103041345
XM_007244814.3 mRNA upstream 25053 8189220 ~ 8191739 (+) True LOC103038651
XM_007244815.3 mRNA upstream 30296 8173875 ~ 8186496 (+) True LOC103038957
XM_007244740.3 mRNA upstream 54607 8149119 ~ 8162185 (+) False acer3
XM_022681004.1 mRNA downstream 10478 8233811 ~ 8241060 (+) True LOC111195015
XM_015604657.2 mRNA downstream 22553 8245886 ~ 8249321 (+) True LOC107197515
XM_015604656.2 mRNA downstream 29569 8252902 ~ 8260391 (+) True LOC103038016
XM_007244735.2 mRNA downstream 37613 8260946 ~ 8269363 (+) True acat1
XM_022681005.1 mRNA downstream 50869 8274202 ~ 8287408 (+) True tmprss2
TU235953 other upstream 291352 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 1675660 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 3033015 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 3313147 4836714 ~ 4903645 (+) False ptbp3
TU234823 other upstream 3347616 4800629 ~ 4869176 (+) False ptbp3
TU236173 other downstream 325620 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 2608835 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2608835 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 3206538 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 3685539 11908872 ~ 11913456 (+) True G175108

Expression Profile