RNA id: XM_022680826.1


Basic Information

Item Value
RNA id XM_022680826.1
length 1360
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103042387
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1760477 ~ 1766925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCTTGCCATTGATGCGGATCATATTGAAGCGGTGCAGCGCGTGACAGCAGCCCGCGCGCTGCGGTCCGAATGGAGGCGTGAAGCGGAGAAAATGCCTCGGTGTGGAGGATCCCTGCAGCCCGCGGAGCCGCTTACACACCAGCTTCAGAGAATCCAGTGGGCACCTGAACGTTCAGGGGATGATCGGCTTTGAGTGCACTATGCCTTCAGTCGCCTTCCAGGATCTGTTTCTCAACATCTATATGGGAATCTTCGGAACTGGAATATTTGTCTTCATACTGAGTCTGAtattctgctgctgctttataAGTAAACTGCGACACCAGGCCCAGTGTGACAGTTTCGGGTATAAAGTGGTTGTATTCCGAGGTGAAACGAAGCAGTTAAATATTCatgggCAAACCTGCGCTGTATGTTTGGAGGACTTCAGGATAAGAGATGAGATTGGAATGTTGCCATGCCAACATGGATTTCACAAAAGGTGTCTGGTGAAGTGGCTGGAGGTGCGCTGCGTTTGCCCCATGTGCAACAAACCACTTAGCGCCCGAGCAGAGAGGGTCGCCAGCATACTGGATGAACTGGTGTAAAAGGCCGCTATGACCAGCTGCATCAAAGGGTCATACGATCCTATTAACTATTTATCATGGGAAGATGTTCAGAtcttcacattggtcattaatCAGTGGACATTCAGACCTGTAGCGGAGATCAATCTCTCAATAGACTGTATTTAAACAGTTTCTGAATAATCCACCTGCACCTGTGCCCCTGTGACACAGTCTCTCCAGgtgcactatatggacaaaagtattggacacctgtttatcctgcttttgttggagtaactgtctctactatccATGGAACATATACTGGAGAGCttctggagcattgctgtgaggttATGATTGCATTTAACAGTATACAGTATCAGTATCGGAttgagctccatcattccagagaacactgttCCACAACATTtatagcccacacctggcattagactTGATGCCAATAcagtaggttcatgtttatcctctacagagagtcctattctattggcagcacttctctacagggactagacaagctgagagtgtgtgtgtgtgcatttgcacatctgtgtcagcaatggatgtAACTTAAAAGAGCTGACTGCAGCATTCATTAGagggggtgtccacaaacatctggacatatagtgtagttTTGTGTAGTGTAGCTACAATAACATATAAAGACACATATAGACAGCTGTTACCAGAGTGCAATCAGTAATTAATGATTCCTTAATGGATCCAAATatgaaaaacaaagaattaaacattaaacaccaagtgctttttttttcctcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233644 lncRNA upstream 62967 1694865 ~ 1697510 (+) True G172576
TU233604 lncRNA upstream 83051 1674159 ~ 1677426 (+) True G172548
TU233548 lncRNA upstream 215521 1478347 ~ 1544956 (+) False zswim6
TU233549 lncRNA upstream 274719 1478347 ~ 1485758 (+) False zswim6
TU233569 lncRNA upstream 290575 1436426 ~ 1469902 (+) True G172522
TU233682 lncRNA downstream 6300 1773225 ~ 1776601 (+) True G172600
TU233683 lncRNA downstream 6300 1773225 ~ 1776601 (+) False G172600
TU233875 lncRNA downstream 72426 1839351 ~ 1840675 (+) False LOC103041266
TU233874 lncRNA downstream 72549 1839474 ~ 1840675 (+) False LOC103041266
TU233889 lncRNA downstream 98176 1865101 ~ 1882035 (+) True G172733
XM_022680820.1 mRNA upstream 6720 1747521 ~ 1753757 (+) False dusp26
XM_022680821.1 mRNA upstream 6720 1748453 ~ 1753757 (+) False dusp26
XM_007250273.2 mRNA upstream 6720 1748456 ~ 1753757 (+) True dusp26
XM_007250274.2 mRNA upstream 6720 1749251 ~ 1753757 (+) False dusp26
XM_007250277.3 mRNA upstream 41530 1713634 ~ 1718947 (+) True LOC103043725
XM_007250268.3 mRNA downstream 72509 1839434 ~ 1850216 (+) True LOC103041266
XM_022680680.1 mRNA downstream 192160 1959085 ~ 1961614 (+) True LOC111194965
XM_007250263.3 mRNA downstream 207320 1974245 ~ 1981134 (+) True polm
XM_022680866.1 mRNA downstream 223840 1990765 ~ 1993332 (+) True LOC103032544
XM_022680868.1 mRNA downstream 242735 2009660 ~ 2018739 (+) True ddx56
TU233608 other upstream 131672 1626799 ~ 1628805 (+) True G172552
TU233563 other upstream 218326 1507320 ~ 1542151 (+) True G172517
TU233211 other upstream 909662 843841 ~ 850815 (+) False LOC111194999
TU233164 other upstream 1174455 584367 ~ 586022 (+) False LOC103038248
TU233162 other upstream 1177672 581730 ~ 582805 (+) False LOC103038248
TU233877 other downstream 86357 1853282 ~ 1855754 (+) True G172725
TU233936 other downstream 227783 1994708 ~ 1997362 (+) True G172770
TU234126 other downstream 951684 2718609 ~ 2726070 (+) False LOC103031931
TU234364 other downstream 1973377 3740302 ~ 3743205 (+) True G173094
TU234387 other downstream 2142017 3908942 ~ 3931991 (+) True G173111

Expression Profile