RNA id: XM_022680996.1


Basic Information

Item Value
RNA id XM_022680996.1
length 2426
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC103039588
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8030275 ~ 8062760 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacactcacacacaccgcCGTGCTCCCCTGTGAGAGCCTGGAGgtagacagggagagacaggtgACTCCAGAATGAACCTCTTCTGCTTCACTCTGGACGGCTCTACAGACAGTCTGTATGAGTTGCCCCAGAGGAGTCCTGCTGGTCCGGAGTTGAGTCCAGTGCCCAGGAGGAGACCCTGCAGCCCCAGGTGTCTAGTGGACAGCGGCAAGTGGGGCGGATCAGAACCGTGCATAGCCTTGAATCGTCCACAAACACCCAGAGCGCAGCTCACCAAGGCCGACTCAAAGAAAGCAAAGAGAAAATGCCAAAATCTCCTGCAGCACCACCCCGTCCAGCTCCTATCACAGCTATCAGTGGCAACGTCTGACGATGAAAACACAGTGTCCAGTAATGCTTACTGGCCGTGCTCCAGAAAGACAGATGAGTCAGTTCACAGCAAGAACCATCAAAGTGAAGGTGTGGCTGAAGATGCCTACATCACAAAGTCTTTGGGTCAAGAAGAGGAAATGGAGATGAAGCCAGaaacaagagacagagagcacCCTCTTCAGGGCGTCAATTTCGAGGCCTGGAATCCGAACAGAGAGATCTGCGAGAGCAAACAGCACGAAACAGGTGGCGAGGGTGAGAGCGAGCTGGAGACAGAGGGAACTCTGAAGAAGATCCAGAAGCTGGTCCGGGTAAAAAAGAACAGCAAGGACTGCTCAGAGGAGAGCAGGAAAACACCAGACTCAAGTGGCCACTCAACACAGACACATTCTAAAGAAGGTAGCCCGGTCATCACCTGCATAGGACTGTCCAAAAGGCCTGAGAAGAAGCATGGGAAAgagctcctccagcagcagcatcagcagcccgAGCCAGCAAAAGAAATGGACATAATGGAGTTGGAGGGTCCCTGGAGCCCGGGGCCTTTCCAGCACTGGACTAGTATGGACTGTTCTCCAGCATGGGAATTATCTCATCATACCTGCCATAGACCTACAGCTGATCAGCACTTTTATTCCTTCGACTTCCATCTGGCCTGCGGGGCTGAGTGGGACAGGTTTGAGGAGATGTTCCACGGCCTGGACCACCTGAGGAGGGACCACTCACCTGACCTGGAAATAACCGACCCCACACGTTCCTCCAGCTTTGGAAGGTTCGACACATCTAAACACTCTCCCCAAACCAAGGCTGAAGAACATGAAGGAACCCTGGGCACGGATGGAGAGTCACCCGAGGGAGAGCACAGTAAAGGAGGGATCGGGAAGAAGATGAAGGCCATCTCCATGACCATGCGCAAGAAGATGGGCAGAAAGTATGTGAAGGCTCTGTCAGAGGAAGTGGGAGAAGACCTGGACAGAGACCATGAAGGAGAGACCCCCGGGAGCAATGCTTTGGGCAAAGACTGCAGGAGGTCCAGTAATTCAGTGGAAAGCCTCTACAGTCTTCACAGTGGGCAGAGCACCTCCAGTGGGGTCACCAGTGGTTCTGATGGCTCCAGTAACAGAGACAGTCTGAGGCTGGAAGAAGAGCTCCCATACACCGGGCAGTTCTGTGGCCGAGCAAAAGTCCACACTGACTTCGTCCCGAGCCCATACGACGCAGAGTCCCTCAAACTTAAGGCTGGAGATATGATTGACATCATCAGTAAGTCCCCTAATGGAATATGGACGGGTATGCTGAATAACAAAGTGGGAAACTTCAAGTTTATCTATGTAGACGTCCTGGCAGAGGAACCTGCACCCATCCAGAGGATGCGACCCAACAGAAAGAGCAGGAGGCCGAGACCCAAAACCCTACAGGAGCTCCTCGAGAGACTCAACCTAGAGGAGCATGTTTCCTCCTTACTGCTGAACGGTTACCAGACAGTGGAAGATCTGAAGGACCTGAAGGAGCAGCACCTGATTGAGCTGAATGTGACTGATCCTGAGCACAGGCAAAGACTGCTGGCAGCTACTGAGTGTCTACAGGATGCAGAATtgAGTAATCAGAAGGACGGTGAAGGCGAGGACGAGCCCAAATCTCCCACTGATCCAGTCAAAGTGGAGCAGAGCGACTGTCCCAGAGACTCGGGCTGCTACATCGCTTCGGACTGCTCCGACAACAGCAAAGAGGACACAGATAACCATCTGCCATCTCTCGACCCACCGGCAGCCCAAGTGTAACCACACTCAGTTTCAGTCCTGCATACCATTCAAACCACCCACTCTGCACGTCCGGCCACTGCCCTAAAACACAGGCTTCTGGGTCACGCCTGTGCAAGGCAGGGTGCTATCTGTGTCGTTCTGACTGCATCTGAAGCCTTTGTTCCCCTTTTAAGCTGTGCTTACATTCCTGGATTAAGACTCTGGTACAActatcatatatatttacatctgtatgggatatacagctctggaaatacaaaaaataagagaccacttaaaaattatgag

Function

GO: NA

KEGG:

id description
K23707 SAMSN1; SAM domain-containing protein SAMSN-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235944 lncRNA upstream 126434 7902800 ~ 7903842 (+) True G174255
TU235949 lncRNA upstream 137713 7883716 ~ 7892563 (+) True G174256
TU235839 lncRNA upstream 358416 7667401 ~ 7671860 (+) True G174176
TU235832 lncRNA upstream 384725 7644929 ~ 7645551 (+) True G174170
TU235803 lncRNA upstream 664222 7363239 ~ 7366054 (+) False LOC103045725
TU236008 lncRNA downstream 95278 8158038 ~ 8166662 (+) True acer3
TU236120 lncRNA downstream 167548 8230308 ~ 8230617 (+) True G174366
TU236172 lncRNA downstream 435695 8498455 ~ 8498951 (+) True G174408
TU236202 lncRNA downstream 499750 8562510 ~ 8562865 (+) True G174424
TU236222 lncRNA downstream 592764 8655524 ~ 8658542 (+) True G174438
XM_007244750.3 mRNA upstream 270426 7739611 ~ 7759850 (+) False LOC103044917
XM_015604641.2 mRNA upstream 270426 7739628 ~ 7759850 (+) False LOC103044917
XM_022680991.1 mRNA upstream 270426 7739922 ~ 7759850 (+) True LOC103044917
XM_007244819.3 mRNA upstream 344817 7683167 ~ 7685459 (+) True LOC103040212
XM_007244754.3 mRNA upstream 717432 7298963 ~ 7312844 (+) True LOC103046439
XM_022681002.1 mRNA downstream 72819 8135579 ~ 8143458 (+) True LOC103042774
XM_022681003.1 mRNA downstream 82489 8145249 ~ 8148344 (+) True LOC103042468
XM_007244740.3 mRNA downstream 86359 8149119 ~ 8162185 (+) False acer3
XM_007244815.3 mRNA downstream 111115 8173875 ~ 8186496 (+) True LOC103038957
XM_015604663.2 mRNA downstream 125969 8188729 ~ 8209285 (+) True LOC103041846
TU235953 other upstream 104836 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 1489144 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 2846499 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 3126631 4836714 ~ 4903645 (+) False ptbp3
TU234823 other upstream 3161100 4800629 ~ 4869176 (+) False ptbp3
TU236173 other downstream 486193 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 2769408 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2769408 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 3367111 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 3846112 11908872 ~ 11913456 (+) True G175108

Expression Profile