RNA id: XM_022681002.1


Basic Information

Item Value
RNA id XM_022681002.1
length 3030
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103042774
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8135579 ~ 8143458 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAGTGCAATCAGAgctgttcattttaaaaaggCTGTTCCCAGCTTCCAGAAACAACGTCCTTTTAGTGCTAAAAAGTTCTCTAACTGGATTTGAGACTGTGAAGGCTGACACGTCAGAGGAACAGCACAAAGCTGAAGGACTTTTACAAGagaATCAACTCTGAAACCATGTGGGTGAAAAGCCTGCTGGCCCTGTGCCTGTTAGCCAGTGTTAGAGCAGACAAAGCTCTCAGCAGCCATGCCACCATCCTAGTGGACAGCAGCACCAACCTGGCCTTCGACCTGTACCACAACATGGCCAAGGAGAAAGATATGGAGAACATCCTGATCTCCCCAGTGGTGGTGGCCTCCTCCCTGGGCGTGGTCGCTCTCGGAGGAAAGTCCAACACTGCCACTCAGGTGAAGACGGTGCTCAGCGGCAATAAAGTGAAGGACGAGAACCTCCACTCCAGCCTGGCTGAGATCCTGACTGAGGTCAGCAACTCCACCGCACGCAACGTCACCTGGAAGATCAGCAACCGCCTGTACGGGCCCAGCTCGGTCAACTTCGTTGACGATTTCCTGAAGAACAGTAAGAAGCACTACAAGTACGAGCACTCCAAAATCAACTTCAGAGACAAGAGAAGCGCCGTGAAGGCCATCAATGAGTGGGGGTCCAAGTCCACCGATGGCAAGTTGCCAGAGATCACCAAAGATGTGGAGAAGACCGATGGGGCCATGATCATCAATGCCATGTTTTACAAACCTCACTGGGACCAGCAGTTTCATCATAAGATGGTCGACAACCGTGGCTTCCTTGTGCATCGATCATTCACTGTATCAGTACCCATGATGCACCGCACagGTATCTACGGTTTCTTAGAGGATACCACCAACAACCTGTTTGTGTTGGAAATGCCACTGGCACATAAGATGTCATCTGTGGTGTTTATCATGACCTACCATGTCGAGCCTCTGGAGAGAGTGGAGAAACTGCTGACTCGCAAACAGGTGGAGACTTGGCTGAGCAAGCTGGAGCAGAAGGCCGTTGCAGTATCTTTACCAAAGGTCAGCATGGAGGTCAGCCATAACCTGCAGAAACATCTTGGAGAACTTGGCCTGACTGAGGCTGTGGACAAGACCAAGGCTGACCTGTCCAACATCTCGGGAAAGAAAGAACTCTACTTGTCCAACGTCTTCCACGCCTCAGCCCTCGAGTGGGACACGGAGGGCAACCCTCCAGACACCAGCGTCTTTGGCAGCGACAAGCTGAAGAACCCCAAGCTCTTCTATGCCGACCATCCATTCATCTTCTTGGTGAAAGACAACAAGACCAAATCAATCCTCTACATCGGCAGGCTGGTCCGGCCAAAAGGCGACAAGATGAGAGatgaattataaaaaatgtgttcttAACTTAAACACGTTTTTTAATTGGATTCCCTTTTGGGTGCACCTGTGTGtatttgttagtgtgtgtgtgtgtgtgagagagagagagagaaagagtgtgtatgtgtgtgtgtgtgtgtttgtgggagaGAACTTTGTTCACATTTGtctaaattaaagaaactgtTCAACCAAACATGCTAACACGGCTGACAAAGAATGGAAGCAATTGGCCACAATTAGCATTTAGCAGTTAGCAGTGAATTtgcatcatttttaggtggctTCCACAGGGTCCTTGCACCATATTAAAAGTCAAtaaagacctcaataaatatgatttaagacccaaaatgtagtcataatttctttagttctctccccagtaaccttagctaactttccactgacgttagtatgttagtaaactccctgctaatgttagttctgtccctggtaacgttagctagcttgttgaagctagctaaagttactatgttagctagcttgctgctaacgttaCTTCTACCCCTGGTTATGTTtgctagctcgctttagctagcaaaagttagtatgttagctagctcaccgctaaagttagtatgttagctagctcaccgctaaagttagtatgttagctagacagccgctaatgttagctagctctctcctaaccttagttctctccccggatTAGATGTTTATGGTGGGCCACTGTGTTTTCCCACTGGATCTAAACGCACCATCTGAATatttaatacctacagcaaattttcagtaaatttaagttaatttaagacTTTCAAAAGGACCAGCAGGAACCCTGTTCCATTTACTGTTAGCGAGATTAGCATTTTTGGCTGAACATCAGACATTAactgaggagtgagagagtaaaTAGTTTGCCTGATACCTCAGAAGGACATTCCATACAATCTGTGGACCGCCATCTAGGTGCACTGTCCAGTCTTGGCCactttttggccactttattagaaacactttgaAGAACTTTCACCCTGTAGGTGTATCTCTCTGTTGATAAAAGCCCTAAAGTCATTCATGGTGCTAAAAATGGTGCATACCCGAAAGCAACAGTGGTTCAGTCAACAGTGGTTCTGCAGTCAGAAACTGGTTGATATAGTGAACCTATTagggtgggtgtttctaataaagtggccaagtaaGTGTCTAAAGTGTGAAACAACTCATCCTAACGTCTTCATTAAAGTTAAATGACCACACTGTCCGACTGTAGTAAAGTTGACCTATGTGAGAGTTAAGAAGAATGACATGCTTATATTAAGTATGATGTCCAACAAAAAGGCCTTGCATCCATTAACAGCATTTCTCTCAGGGTTTTCGCTCTTTGTTTTATCCGTTTGTTTGGTCGGCCGTGCTGAGTTACCAAAACCACAAGCCAAATGCTTGGCATGTGAAATATGTGTGGGTTCGTGAAAATATCTTTAATGTTTGAAGTTACGAATTTAGCACAAGTGTTCTGTTGAAAAGTGTATATGTTGGAAAAGCTACATGGAGAACATGCATTCCTCCTTGGCCTGAAATCCACGCTTGTGTCTGGCATGGTTCTAGTCCGCACTGAAAACAATGTGttttggactgttttttttctaaataaaagcAGCACCACTGAAAA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K09501 SERPINH1, HSP47; serpin peptidase inhibitor, clade H, member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235966 lncRNA upstream 70778 8006273 ~ 8064801 (+) True G174263
TU235944 lncRNA upstream 231737 7902800 ~ 7903842 (+) True G174255
TU235949 lncRNA upstream 243016 7883716 ~ 7892563 (+) True G174256
TU235839 lncRNA upstream 463719 7667401 ~ 7671860 (+) True G174176
TU235832 lncRNA upstream 490028 7644929 ~ 7645551 (+) True G174170
TU236008 lncRNA downstream 14580 8158038 ~ 8166662 (+) True acer3
TU236120 lncRNA downstream 86850 8230308 ~ 8230617 (+) True G174366
TU236172 lncRNA downstream 354997 8498455 ~ 8498951 (+) True G174408
TU236202 lncRNA downstream 419052 8562510 ~ 8562865 (+) True G174424
TU236222 lncRNA downstream 512066 8655524 ~ 8658542 (+) True G174438
XM_022680997.1 mRNA upstream 72819 8030275 ~ 8062760 (+) False LOC103039588
XM_022680996.1 mRNA upstream 72819 8030276 ~ 8062760 (+) True LOC103039588
XM_022680999.1 mRNA upstream 72819 8045456 ~ 8062760 (+) False LOC103039588
XM_022680998.1 mRNA upstream 72819 8047396 ~ 8062760 (+) False LOC103039588
XM_007244750.3 mRNA upstream 375729 7739611 ~ 7759850 (+) False LOC103044917
XM_022681003.1 mRNA downstream 1791 8145249 ~ 8148344 (+) True LOC103042468
XM_007244740.3 mRNA downstream 5661 8149119 ~ 8162185 (+) False acer3
XM_007244815.3 mRNA downstream 30417 8173875 ~ 8186496 (+) True LOC103038957
XM_015604663.2 mRNA downstream 45271 8188729 ~ 8209285 (+) True LOC103041846
XM_007244814.3 mRNA downstream 45762 8189220 ~ 8191739 (+) True LOC103038651
TU235953 other upstream 210139 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 1594447 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 2951802 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 3231934 4836714 ~ 4903645 (+) False ptbp3
TU234823 other upstream 3266403 4800629 ~ 4869176 (+) False ptbp3
TU236173 other downstream 405495 8548953 ~ 8552609 (+) False LOC103038455
TU236775 other downstream 2688710 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 2688710 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 3286413 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 3765414 11908872 ~ 11913456 (+) True G175108

Expression Profile