RNA id: XM_022681025.1


Basic Information

Item Value
RNA id XM_022681025.1
length 6291
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC103036148
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9354908 ~ 9498192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagggagggagggggagcaCTGTAAATGCATACtgaggagagatggagagatgaagGAGGAGTGTGTGAATGGAGGGGAAGCCACAACAACAAGGAGCGAAAGAACATGAGACTGTAGcgcattctctttctctctctctctctctctctctctctctctctctctgttggagCAGAGCAGGATGAGCGGGAGGATGTCAGTGGGGAGCTGCTGTGAGGGGCTGTGAGGGCCTGGCTGGAGTGTCATTAAGGATTGCAACTCACCTGAAAAGACCCAGTATGCTGCAACCACCTCTCCTAGAAGCCCAGCCCTGTCCTAGAAGCGAAGTAAAAAGAAAGGATCTTTCAATTACCGGATGAAATGAAGATCTGTCAAGATAATTTCTTTCAGCAGGTGCTCTAGACAAGGACTGTGATTGCCAGGATGCTTTGGGACAGCCTGCACTGATGTTCAGAGATATTGGATCAGTCGCCCAGATCTGTAAGACTTTGACTGGAACCATTTCCGAAGCTTTGATTACATGTCAACAGGATTAAGCCTGTTCAAAACCTGTGGGCTAGTCACCCAGATGATGTTGGATCACATTTACACTTGGGAAGAAACCGTGATCATGACCGAGACTTCCTGCACTGCATGTCGAGAATCCTGTAGTGGACCTCAAGATCTTCTTGGGAATCAGAAAACAGACTCATGTTCTGAGAAGTGATACATAAAAAATTCCCCCAGAACAGTCAACCAGATCACATTGAAGTTGATTTACAGGTTATGCCCTATTTCTGGAGCTTCCGTTCTGAGAAAGAGCTCTTCAAACTCATCTTGAAGTTGCCCACCAGTTGACGGACACTCCTGATGTTTCAAACCCCACAACAGCTCTTGAAACATTTTGTTCTAGTCACACTCGACTCTGGTAGTCACTGTGGGATCAAATGCGCCCCTAAGAGAAGGAAAAACCATGACTGAGACTCTGCAACTTCCGGCGCTGCAGATCCAGGCCCCCGGGGACTGGGAGGAGGATGGCTCGAGTGGAACCACAAGTGGGGATCTTGCAGGACCACCCAGCACACCACTTAGCTCCTTACCTAGTCCTTCCTCCAGTCCCTCCTTGCGGCGCAAACGCTTCAAGATGCGGCGCATGAAGAACGTGCAAAGCGAGAGGGAGGCGGCTGACGGGGGCTCTCCGGCTCGTTCCGGGTCCAAAGAGTACCTGCAGCTCCCTTCCATTGAGATCACGCCATCCAGTGACGAGGATGCCGCCTGGTCCAACTGCTCCACACCCAGTGCCTCGCCGCGGCGCAAGCGTTTCCTCCTACGCAAGTGGCTCAGAGGCGGCGACAAGAAGGAGCAGAGCAGTGAAAGCAGCAGCCAGCAAAGCAGCTTACAGAGCAGCCATGAGGAGGAGACCACCCGCTACCTGACCCCCAACATCCGCGAGGAGAGCACTGCCAGTAACTCGAACCGGAGCACACCCACTTGCTCGCCCGTCCTCCGAAAACGCTCTCGCTCGCCCACCCCCCAGAGCCCTGAGGGAGAGAACATGGTGGAAAAGGGCTCCGATCACTCCTCCGATAAATCCCCCTCCACCCCCGAGCAGGCCGTCCAGCGCACCTACAACCAGTCCGTCCACACCAGCACCCGCAGCGGCGGCAAGAACTCCAAGAAAAGTCAAAGCTGGTACAACGTATTGAGCCCCACGTATAAGCAGCGAAATGAGGACTTCAGGAAGCTCTTCAAGCAGCTGCCCGACACTGAGCGCCTCATTGTGgACTACTCCTGTGCCCTGCAGAGAGACATCCTCCTCCAGGGTCGCCTCTACCTCTCTGAAAACTGGATCTGTTTCTATAGCAACATCTTCCGCTGGGAAACGCTGCTGACAGTGCGGCTGAAGGACGTCTGCTCCATGACGAAGGAGAAGACAGCTCGCCTCATCCCCAATGCCATCCAGCTCTGTACTGACAATGAAAAGCACTTTTTTACCTCATTCGGGGCACGAGACCGGACTTACATGATGATGTTCCGGCTGTGGCAGAACGCTCTCCTGGACAAGCCATTATGTCCCAAAGAGCTGTGGCACTTCGTCCACCAGTGCTATGGAAATGAGCTGGGCTTGACGAGTGATGATGAGGATTACGTGCCTCCAGATGATGACTTCAACACCATGGGATACTGTGAGGAGATCCCGGCCGAGGACAACGAGGCCAACGACGCCTGCACCAAAAGCCCCGAGGTCAAAGTGGACGCCAGCCCGCAGCTGCCCAAGATTTTCACCAGCAATAACCTCTCTTCCACAGGCAGCACTGACACGCCAGTCCACTATGACCTAGCACCAGAGGAGGAGTTTACTGGCTGTCTTCCTGAGGACCTCCTAACCCTGCCCTTGCCGGATAACAAGTTATCCGAGTCCAGTGCCCCCGTGCCCTCACCCTCGCTCGACTTCAACGACAATGAGGATCTGCCCACAGAGCTCAGCGACTCCTCGGAAACTCACGACGAAGGAGAAGTCCAGGCCTTCCATGAGGATCTGAATGGAAAGCAGTACATCAACGAGATCTATAAGTTCAGTGTGGATAAGCTGTATGACCTCCTCTTCACCGAGTCCCAGTTCATGAGAGATTTCCTGGAGCTGCGCCGCTTCTCTGATGTGGTTTATCGGCCCTGGAAGAAGGAGGAGACGGGGGACCAGAGCAGAGAGATCATGTACACCATCTCCCTCACCAACCCTCTGGCTCCAAAGACTGCAACGGTCACCGAGACCCAGACTTTGTATAAAGCTAGTCAAGAGAGCGAGTGCTACATCATCGACGCTGAAGTGATCACCCACGACGTTCCTTATCACGACTACTTCTACACACTTAACCGCTACGTACTCACCAGGGTGGCCAAAAACAAGTGCAGATTGAGGGTGTCGACTGAGTTGCGTTACAGGAAGCAGCCGTGGGGGTTGGTCAAGGGCTTTATTGAGAGAAACTTCTGGAGTGGCCTGGATGAATATTTTAGACATTTAGAACTAGAGCTAAGTAAGATGGAGGTAGCGTTAACAGAACCACATGGGCAGTCTCCCAAAGCCAAAGCGGTGCGAGCGGCCACGGCCAGGCGGAGGAAGAGGCCGATGGTTCATCTGCGGCCGCAGCACCTGGACGAGGCCCTGAGTCCCGTCACCACAcctgaggatgaggaggaggtcATCCATCGCATCAAACATGTGGCAGGTTCCACGCAAACCCGACACCTTCCTGACCCGGGCCCTGGTGGCCTGGCCCTCTACAGCGTCTCCAAACTGCTGCTCATCATCAGCTTTGTGATCTGTGTAAGCCTGGTGTTGCTGGTTCTTCTCAACATGATGCTGTTCTATAAGCTGTGGGTGCTGGAGTACACCACACAGAGCTTAGCGTCACTGCAGGGCCTGAGACCCGGCGAGAGCAAACTTCCACAAACACAGATGGAATGGGCTCAGCTATTGGAATCCCAACAGCGTTATCACGATGATGAGCTGGAGAAGTGGCGGGAGGTCATCAAGTCGTCAGTGGTGTTGCTGGATGAGATGAGGGACTCATTAACAAACCTCCAGAAGGGAATCGGGGTCCGAGACTACGGCTCCAAGCCTGAGGAGAAGAGGAGTCGCTACCACTGAGGCGCTGGCCGAACGGACGTCTTGTGCAATACGAAGGGGGGAGCGCCTGGCCTCAGGGCTAAGCTGGACTGGACTCGGCTGGACTGAGCTGGACCGGACTGGACCGGGCCGGACTGGACTGTCTTCCTCGCTCCTCCTGTCCTCAGTGAAGCATTCATATGGGAAAGTGAACATAAAACAAACTGCATGCGGTTTGACCCTCACTTTAACGACTTTGACTATGAACTTTATAATCCTGCTCGCCCAGAGCCAAAATACGAACAaacgaaacaaacaaaaaaaaaaaaacacaacaacaacaacagggACTTCTGGTTCGTTCAGGCCCGTTTAAAGGGCTTGAGTGAGTGTTAAACGCACACATTGCCACGTCCCAGCTGCAGTATCCCTTTTGATAAACATTTTCAGAATCTGGGACCAGGGTTAAAATGCCGACTTAATATAATCGTTAAGTGTTTCTTGGAGGCGCGCACATTTACCGATATGAATGCCTAAAAATAAATTGGAAACAAAGTATATTACGGAAACGTAcccattaaattatttatatgtaGAGCTATATTTGTTGCCAGAGCTAATTTTTATGAGGCTTCCATGGAAAATCGGGGCTGGAACCCTGATAGCTTGTGCCATGGTGCTAATTATGCATTTACAGTATGTTATGTTCATGTTATGGTTGCGCAGGTTAcgtttttctgtctgtgtgtaaagTAGCTGCGTCGTTATTCGTTATTCTCTTTTGCTCATGAAATTTGAAGGCCAGTAGAGGTTGATGAGTGCGTCCTCGTCGTCCACGACCTGAGAGACCTCCAGATACCTTTCTAGTTCTGAGCTGTACCTCATTTTCGCACAGGCCGAAGGGCGGTaggaatgtttcttttttttattatttctccaTGCCTCCGGACTATTGACGACATTGCGCTGCCAAGTTTCCGAAGCCACATTGTACTCTCATTTTCATGCCGTtgggtttgtttgttgtttattttgtgaaCCAAGTGGTGTTATAAGCCCTGCTGCTAGAGGAGTGGTGGGAGGAGTGAGAATATTCGCAGGTTAGGAGTCATTGTACAGGCAGCTGTTTTCTGGAGCCAGTAAATGAGAAGGTTACTGTGCTGGAGCAGTACCAGtgtttcattattattactattattcttcttattatttttttcttattttttatctgtttgGGTGCAGACACTCTGAGAAGGGGTACTGCAGCTGGACCAGTGGAAACAGTTGTTGTAGAAGTAAGGTAACTAAACTGTGAAGAAACAAAGAATCTCCACATATGCTTGAAGTGGGTTGGGCGAAAATAGGTATTAGGCCATTTCCTTTCAGTGTATTAAACATGGCAGGCATTAAGTGTTAAAGGCAGGATGGAAGGACGTGGGCATGATGGAAACATCATAATTGATGTGTGGCCGATAATAAGCGTattgcacaaaaaataaatgattgcaTCAGTCAGTGTGTGCTACTGATAAAAGAATGGTAAGGTTTGGAAAGCTTCCACTGTTGAGCACTTGAGCAAGGCCCTTAAGTTTCACTTCTCACTAGTGCTCATGTGTGTAGAGCTCACtagtgtgtacatgtgtgtgctGGTTTAAATACAGATGGTTTACAGGTAGAGGCCACATTGGTTGTCTTGTCTATCAAGTAAAAATTGCACCATTACGATACAAGTCCCTAAACATCCAAAAATCGAAAGTTTATTTGCTGCACTAACCTTGCAGGGCAGACTTTGGTAATGCATCGGGTAGGTCTTCTGTAATGCAAGTACGTGCATTTTCTCCCAAAAGATAAAATGTATTGAGCTGTTTGGAATCAACCACAATTAAGGCGCTATGGGCTGTGTGGTGTACTCGTAAGAGGGTTAACCGGTTAGCGTTTTCATACACATTGTATTGGGCTGAGTGGTGTACTCTCTAAAAAGAGGTATCCGATAGTGTTTTGATACTTACTGTATTGGACTTAGAGGTTTATTCTTGAGAGGGATACGGTTAGTGGTATTAAAGGGCTCCTCTGGGCTACCATGTTGTTGACTGGGAAATGACCTGatgttgattttaaaagtttCTAGAGCATGTTGAGGGTCAAGAGAGTGCCAGTGTGGTGAGGAAGAGTGGATTAAAATGGACCGGAACTCTGAACCTGACACGATTGCTGCTGTGATAAATCCAATACCTGCAAAAGTGTTAGATAAGAAATAATGCATGGATCTCATTTTTGTTGCGACCATATTGCTTGTGTAGACCAGAGTAGACCTGCTTATATAAGCTTTAAAATAAGCTGTGAGGATGTCTTTAAAACCTGAAGCAACATGTCTTACCAGTAAAGTCAGgccatttacatgtttttttttttttatatacactccaATTATTCGCAGCCAGTAGTAACTTCACAGTCTGGTCAGGCCTTGATCTTTCAGGGTGTGCGTTTTCTTGGTTTCTTGACTTTTCTTGTAGTTTGTTTGAGTTCCACTTTTTTGTCAGGGAGTCGGTCCACGACCTTATTTATGCGCTTGGCAGACTTTGACTTTCAGTCCTTTTACAACTTTAACCTAtttcattttggtgaaaaaaataatgagggCTTAGAAGGATTGTCTGGTATTGCATCATTATAACgggttgtgggaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236403 lncRNA upstream 33567 9319390 ~ 9321343 (+) True G174582
TU236404 lncRNA upstream 40772 9313904 ~ 9314138 (+) True G174583
TU236397 lncRNA upstream 203844 9126708 ~ 9151066 (+) False rexo2
TU236563 lncRNA downstream 262360 9760552 ~ 9762446 (+) True LOC111195021
XR_002651416.1 lncRNA downstream 262364 9760556 ~ 9762344 (+) False LOC111195021
TU236583 lncRNA downstream 321919 9820111 ~ 9820433 (+) True G174719
TU236603 lncRNA downstream 724518 10222710 ~ 10223083 (+) True G174738
TU236653 lncRNA downstream 813001 10311193 ~ 10311590 (+) True G174783
XM_022681020.1 mRNA upstream 41527 9206552 ~ 9313383 (+) True LOC103036746
XM_022681021.1 mRNA upstream 41527 9206552 ~ 9313383 (+) False LOC103036746
XM_022681522.1 mRNA upstream 204832 9136955 ~ 9150078 (+) False rexo2
XM_007244712.3 mRNA upstream 264117 8817587 ~ 9090793 (+) True kirrel3
XM_007244713.3 mRNA upstream 670959 8678239 ~ 8683951 (+) True kcnj1
XM_022680690.1 mRNA downstream 128252 9626444 ~ 9627785 (+) True LOC111194972
XM_022681035.1 mRNA downstream 142835 9641027 ~ 9642491 (+) True LOC111195020
XM_007244708.3 mRNA downstream 146918 9645110 ~ 9646923 (+) True LOC103032234
XM_022680691.1 mRNA downstream 162732 9660924 ~ 9662061 (+) True LOC111194974
XM_022680692.1 mRNA downstream 167849 9666041 ~ 9667743 (+) True LOC111194975
TU236173 other upstream 802301 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 1429470 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 2813778 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 4171133 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 4451265 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 1333976 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 1333976 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 1931679 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 2410680 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 2410680 11908872 ~ 11913456 (+) False G175108