RNA id: XM_022681043.1


Basic Information

Item Value
RNA id XM_022681043.1
length 2660
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC111195024
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10736746 ~ 10739405 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAATTTTCACATATGGCAAGGGCATCCTAAATTGGAATTTAGTTTGTGGTtggaaaaaacagacagaaacgATGGGCTTCACAACCAGTGGAATAGATGTCTGTTTGAGGACGCTGCTGCTTTTGTTTAGTTGGGATTTCTCTCGTGGTCAGATTTCTTACTCCATCTCAGAGGAGGTAAAGAAGGGCACTATTGTTGGGAATTTGCCGAAGGATCTTAATGTCGACGTCCAGGAGCTGCAGTCGCGCATGTTACAGGTCGTGGCTGGATCTAATAAGCGCTACTTCGATGTGAATCTGAAAACGGGAGCGCTGTTTGTGAACGACAGGCTGGACAGGGAGGAGCTGTGTGAGAGTAAGCAGAAATGCTCCCTCAACATCGAGGTAATGGCACAGAACCCCATAAAGCTCTATCGTGTTGAGGTGAACGTAGCAGACATTAACGATCATTTTCCGGTTTTCCCACTGCAGAAGTTAGTgaaaaacattactgaaaacgTTGTTACTGGGGATCGTTTTTCTCTGCCTGCAGCTCGTGATTTGGATGTCGGAATAAACTCTGTGAAAACCTACAAGCTCAGTCACAACGATCATTTCTCTCTGGATATTCAAAGCTATGGAGAACATAGTGTTTCAACAGAGTTGGTGTTGCAAAAGCCTCTAGATCGAGAAAAACAGTCTGTTATAAATCTCATACTGACGGCTGTTGATGGAGGAAATCCTGTCAAATCTGGAACAATGGAAATAATTGTTAACGTGTTAGATATTAACGACAATAATCCAGTGTTTAGCAAACCTCTTTATAAAGTTAAGATAAAGGAAAACGTGCCATTTGGGACAAAAATCTTAACTGTCACTGCCACCGACCCAGATGATGGCGTGAATGGAGACATTGTTTATACTCTTGTAGAGCAAGAAGGGAACTCTGCATCTcgtttattttctgtaaatccgGAAAATGGAGATATCAGCGTTAAAGGCAATATTGATTACGAGGAAAATCCAGCTATTGAACTGAGAGTACAGGCTCAGGACAAAAGTATATCTCCAAGACATACGAATTGTAAAGTATTAATTGAAGTTGAAGATATAAATGACAATGTTCCTGAGATTTCAGTGACACTGCTTATGAGCTCAGTCAGTGAGGACACCAAACCTGGCGCTGACGTAGCTTTGATTACAGTTTCAGATAAAGATGATGGCAAAAATGGAAAAGTAGATTGTAAGATAGTAGGGACGAGCCCATTCAGACTGCAGTCATCCTACAAAAACTCATATTCTCTTGTAGTAAACGAACCACTGGACAGAGAACAGGTATCCCAATATAATATCACAGTAATAGCCAGTGATGAAGgctctccttctctttccagCACTGCAATAATAGCTGTTCATATTTCTGACGTAAATGACAACTCACCTGCATTTCAATCACCTGTGATAAATATCAGTGTCAAAGAGAACAGTCCAGTTGGAGGGTTGCTGGCGACCATAACAGCCCACGACTCAGATATCGGTGAAAATGCTCATGTTTCGTATTCTTTAATTGATGGAGAGAGCAGTAGAACACAAGTGTCCACTTTAATGAACATAAATTCCCTCACAGGTGAGCTGTATAGCTTGCAGTCTTTCAATTATGAGGAAACAAAACAGATACAGTTTAAAGTTCAGGCTACAGACGCTGGGATCCCTGCACTCAGCGGCAACGTGACTGTAAATGTCTTTATTCTGGATGAGAATGACAACAGGCCTGTTATTTTAGCTCCTTATTCTGAAGCTGGAACAGTAAACACTGAGAACATCCCCTACTCTGCTGAAGCAGGATACTTTGTAGCTAAaatcagagctgtagatgctgATTCTGGTTATAACGCACTGCTGTCTTATCACATCACTGAACCTAAGGGGAATAATCTTTTTCGCGTCGGAAGCAGCTCTGGAGAAATAAGGACTAAAAGACGAATGAGTGACAATGACTTAAAAACTCACCCTCTTGTTCTAACAGTGTGTGACCATGGAGAACCTTCCCTCTCAGCAACAGTGAGTGTGGATGTTGTAGTTTTGGAAAGTATTGACAGCGTGCAGCCTTCCCTAAGACAAGTGCCAATGAAAGAGGAAGGTTTCTCTGATCTGAATCTTTATCTGCTCATCGCTATTGTGTCAGTGTCAGTGATCTTCCTGCTGAGCCTCATCACTTTAATTGCAGCTAAATGCTACAGGTCAGATGACCCTTTCAGCAGATGCAGCCCTCCAGTGGTCACTACACACCCTGACGGGAGCTGGTCTTACTCTAAGTCAACTCAACAGTACGACGTGTGTTTTAGCTCAGACACGCTGAAGAGTGACGTAGTGGTTTTCCCCTCGCCGTTTCCGCCTGTTGACGCAGAGCTCATCAGCATTAATGGAGGAGATACTTTCACACGGACACAAACTCTCCCCAGCAGTGAGAAGGTAAGGCGTGACTTGCCTTCTAAGTTGCTTGATCGTATTTACttgcacaatttaaaaaaaactgcttaaaaatcaCTAAATCATTATTCACATGCACTTTCGACATCGCATACGATTGATGTATTTAAATTAGATGTATTTAGAGATTTAGTATTTGAAGAAACTAACGTAAGTTTTCCGAATAATTGCCAGTATTGTCATTTTTATG

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236690 lncRNA upstream 60745 10675716 ~ 10676001 (+) True G174813
TU236689 lncRNA upstream 65575 10670898 ~ 10671171 (+) True G174812
TU236688 lncRNA upstream 69566 10666950 ~ 10667180 (+) True G174811
TU236687 lncRNA upstream 71318 10665077 ~ 10665428 (+) True G174810
TU236686 lncRNA upstream 73252 10661290 ~ 10663494 (+) True G174809
TU236795 lncRNA downstream 92763 10832168 ~ 11019418 (+) True G174874
TU236899 lncRNA downstream 348314 11087719 ~ 11088839 (+) True G174930
XR_002651422.1 lncRNA downstream 354312 11093717 ~ 11095900 (+) True LOC103022678
TU236916 lncRNA downstream 398144 11137549 ~ 11137957 (+) True G174944
TU236938 lncRNA downstream 451076 11190481 ~ 11265122 (+) True G174964
XM_022681533.1 mRNA upstream 907 10732824 ~ 10735839 (+) True LOC103030205
XM_022681532.1 mRNA upstream 6081 10728335 ~ 10730665 (+) True LOC103030520
XM_022681531.1 mRNA upstream 13994 10720527 ~ 10722752 (+) True LOC111195104
XM_022681530.1 mRNA upstream 17420 10716994 ~ 10719326 (+) True LOC107197092
XM_022681529.1 mRNA upstream 20301 10714106 ~ 10716445 (+) True LOC111195103
XM_022681045.1 mRNA downstream 1022 10740427 ~ 10744282 (+) True LOC111195026
XM_022681046.1 mRNA downstream 6137 10745542 ~ 10748152 (+) True LOC111195027
XM_022681534.1 mRNA downstream 17310 10756715 ~ 10758402 (+) True LOC103029876
XM_007237782.3 mRNA downstream 41391 10780796 ~ 10817393 (+) True LOC103026865
XM_022681535.1 mRNA downstream 82118 10821523 ~ 10826252 (+) True LOC103021388
TU236173 other upstream 2184137 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 2811306 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4195614 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 5552969 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 5833101 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 92763 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 92763 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 690466 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 1169467 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 1169467 11908872 ~ 11913456 (+) False G175108

Expression Profile