RNA id: XM_022681047.1


Basic Information

Item Value
RNA id XM_022681047.1
length 2507
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC111195028
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10707324 ~ 10709830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTTAGGCTGTGTCGGCACTGTCGCCTTTCTGTAAAAGGATCTCGTCTAAAGAACAGTAATTCATGAATTTTGAAGAAAATTGATCAACTGCTTAACGACACTACATTGTGATTAATTCTACAACGTCGTGGACTATGGCTTCCTTTGCTGATTTATGGATTATTTATCTATATGTGCTCTTCTATTGTCTCCGGCATGTTGTGTCCCGTCAGATCGTGTACTCTGTATCCGAGGAGGTGAGCCCAGGGACGTTTGTTGGACCTTTAGCCAAGGATTTGAACTTAAAATTGGACGAGCTGGAGTCTCGAGCGCTAAGAATCGTTTCGACTTCGTCCAAAAAGCATTTTGACGTGAACATGAAAACAGGAGCACTGTTCGTGCAAAAAGCCATCGACAGAGAGGAGGTTTGCCCAAACAGCAACGTATGCACTGAAAGCTTAGAAGCAATAGTTAATAACCCTTTGAATGTGTACAGTATAGACGTAAAGATACTGGATGTTAATGATAACACGCCTACTTTTCGGGGAAAATATCAGCATATAAAGATATCTGAGCAAACAATGCCAGGAGCTAAATTTCCTCTACTGAGTGCTGAGGATCCAGACGTAGGAAGCAACTCGGTAGCTTCTTATAAACTCTCAAATAATCAGTTTTTTAGCTTGGAAGTAAACACTGAGGCTGAGAGTGGACCTTCCCCTGAACTTGTGTTACAAAAAGCTTTGGATAGAGAAAAGCAGGCTGAAATACAACTCATTCTCACTGCTGTCGATGGTGGAAGGCCAGCCCGATCAGGTACGGCTAGCATTGTTGTTAGCGTGTTAGATGCTAACGACAATGCCCCTACGTTCGCCAAACAAGTGTACAAAGCTCGGGTCCCAGAAAACGCAGCCGTTGGTATGGTTATATTAAAGCTCAATGCTACCGATCCAGACGAGGGAGTTAATGGGGAAATTATTTACACGTTTAAAGAAGGGCAAAAGGGGGTTTCAGACAGGTTCATTATAAACAGTAGCTCTGGAGAAATAGCCATAGCTGGACCTTTAGATTATGAAGACGTCAGTGCGTATGAACTGCGCGTGGAGGCTCGAGACAAAGGCCACAGTCCACTAGCATCTCATTGTAAAGTGCTAGTAGAGGTCTTGGACGTCAACGACAATGCGCCAGATATTAAACTCACATCGCTACTGGATAACGTCAGCGAAGGCGCCAAAAAGGGCTCAGttattgcatttattacagTTCAAGACAAAGACGAAGGTAAAAATGGAATAGTGCACTGTTCTATATCAAACAACTCTCCATTTATTTTGGAATCCACACAAGGGAAATATTATTCGCTTGTATTGGGGCAAGAGCTTGACAGAGAACAAAACGAGCTTTATAATGTATCAATAACAGCCACAGATGAAGGTATACCTCCTCTCTCCAGCACTACTGTCGTGACTGTTCGTGTTTATGATGTGAATGATAATCCACCTCGCTTCTTAGAACAGTTTGTTAATGTTTATGTAAAAGAGAACAGTCCAGCAGGCGGGTTAATAGCTCTGGTCTCTGCACAAGACATTGACATTGGTGAAAATTCCCAAGTCACCTACTCATTATTTGCTAAATCATATTTATCATCCGCTGTCAGTATTAACTCTATGACAGGAGAAATTTACAGTATGCAGTCTTTCAATtatgaagaaataaaacactttcaGTTCCAAGTTCAGGCTACCGACTCTGGAACACCTCCACTCAGCAGCAACGTGACTGTTAATGTATTCATCTTGGATGAAAATGACAACAGGCCTGTTACTTTACCTCCTTATTCTGAAGCTGGGTCAGTAAGTACTGAGAACATCCCCTATTCTGCTGAAGCAGGATACTTTGTGGGTAAaatcagagctgtagatgctgATTCTGGTTATAATGCACTGCTGTCTTATCACATCACTGAACCCAAGGGGAATAATCTTTTCCGCGTCGGAAGCAGCTCTGGAGAAATAAGGACTAAAAGACGATTGAGTGACAATGATTTAAAAACTCACCCCCTTGTTATAACAGTGTGTGACCATGGAGAACCGTCTCTCTCAGCTACAGTGAGTGTGGATGTTGTAGTGGTTGAAAATGTGGACAGCGTGCGGCCTTCCCTAAGTCAAGTGCCCATGAAGGAGGAGGGTTTCTCTGATCTGAACTTATATCTGCTCATCGCTATTGTCTCAGTGTCAGTGATCTTTCTGCTGAGCCTCATCGCTTTAATAGCAGCTAAATGCTACAGTTCAAATGACCCTTTCAGCAGATGCAGCCCTCCAGTGGTCACTACACACCCTGACGGGAGCTGGTCTTACTCTAAATCTACTCAGCAGTACGACGTGTGTTTTAGCTCAGACACGCTGAAGAGTGACGTAGTGGTTTTCCCCTCACCGTTTCCACCTGTAGACGCAGAGCTCATCAGCATTAATGGAGGAGATACTTTCACACGGACACAAACTCTCCCAAGCAGTGAGAAGGTAAGATga

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236690 lncRNA upstream 31323 10675716 ~ 10676001 (+) True G174813
TU236689 lncRNA upstream 36153 10670898 ~ 10671171 (+) True G174812
TU236688 lncRNA upstream 40144 10666950 ~ 10667180 (+) True G174811
TU236687 lncRNA upstream 41896 10665077 ~ 10665428 (+) True G174810
TU236686 lncRNA upstream 43830 10661290 ~ 10663494 (+) True G174809
TU236795 lncRNA downstream 122338 10832168 ~ 11019418 (+) True G174874
TU236899 lncRNA downstream 377889 11087719 ~ 11088839 (+) True G174930
XR_002651422.1 lncRNA downstream 383887 11093717 ~ 11095900 (+) True LOC103022678
TU236916 lncRNA downstream 427719 11137549 ~ 11137957 (+) True G174944
TU236938 lncRNA downstream 480651 11190481 ~ 11265122 (+) True G174964
XM_015602577.2 mRNA upstream 2426 10696559 ~ 10704898 (+) True LOC107197089
XM_015602576.2 mRNA upstream 2426 10696580 ~ 10704898 (+) False LOC107197089
XM_022681042.1 mRNA upstream 11862 10690842 ~ 10695462 (+) True LOC103034638
XM_015602578.2 mRNA upstream 11862 10690842 ~ 10695462 (+) False LOC103034638
XM_007237793.3 mRNA upstream 52521 10633834 ~ 10654803 (+) True LOC103029337
XM_022681044.1 mRNA downstream 677 10710507 ~ 10713283 (+) True LOC111195025
XM_022681529.1 mRNA downstream 4276 10714106 ~ 10716445 (+) True LOC111195103
XM_022681530.1 mRNA downstream 7164 10716994 ~ 10719326 (+) True LOC107197092
XM_022681531.1 mRNA downstream 10697 10720527 ~ 10722752 (+) True LOC111195104
XM_022681532.1 mRNA downstream 18505 10728335 ~ 10730665 (+) True LOC103030520
TU236173 other upstream 2154715 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 2781884 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4166192 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 5523547 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 5803679 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 122338 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 122338 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 720041 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 1199042 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 1199042 11908872 ~ 11913456 (+) False G175108

Expression Profile