RNA id: XM_022681049.1


Basic Information

Item Value
RNA id XM_022681049.1
length 3402
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC111195029
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10999496 ~ 11002897 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttatatttaaaaaaatacaacataaatattaaaaagtaacatAGAACAGCGCAACATACTCATACTGTTATTATTTGTACACAGTTCTGCAGACTGTTGACAATACAAAATGCTTCAAATGAGTCTTCAAGCAatgctgtagaaaaaaaaaactatttaaactagTAACTGACCAGATTGACCAGAGCTAGCCTCTCTCACTACAGTTTAAACACTGGACAGTGGCTTATTATCAGCCTGCAGCATTGgctttctaaataaaaaaaaaaaaacaataaagagtgCGGCGCGTGTGTGCATGAGAGCGAAGAGAAAGTGGATCGTATAATTTGAACGGTTTGAATCTGCTCTCATTCAGTtcttaaaattatgtttaatgaCATACTTTCtaagatttaaacattttagctTATTAGAGACAAACTTCGGTTTAAGGTGACAACAACTGCAGAACTATATGCTTTCTATTTTAGGGGTGCTGAGACACGTGTTAGGGGCCCTTGAGCCACCATAtaaaagctatatatatatatagctaatcCCTGATAGCATCaatataatctttttttctttatttattgaaaTGTGATGATTTACATAACTGATTGTCTTCTACTGTGTGTTATATGGGAAAGCAACACATCCACAAATGAAGATTTGAGTGCACTATGCCTTTAAGTGGCACAGAATTTTTATTGGTGGAGACCAAACTGAGCTCTCCGCCAATAGTGTGGGAGACTGTACAAAGGGATCTACTCCCTCCCTCAGTCACAGCAGCAGTGCAATCATGAGCGATGAAGTACAAGAGGGTGGTTcctttgtgtttatttcaaGAATGGACGGGTCGAATTCAGTGGATTTATGATCTTAAAATGAGGAATATCACGTTTTGGTTTGGATGCAGAAGAAATACCTACTCATGGGAATAGGTGGAATATTGAGGAGATGAAACATAAAAGAAACCGAGTGTGGAAACAGGCAGCGTTCTGGCTGCTGGGGTTCTCTCTTTTGTGGAATATTACTGGTGCCCAGATTCGGTACACCATACCAGAGGAGCTCAAAGAAGGCTTTGTGGTAGGAAACCTCGCTAAGGATCTTGGTTTAGACGTCTCGGATATCGCTTCCCGTAAGTTGCGATTGGCTTCTGAGTCTAATAGACAATATTTCCACGTCGATTCAGAAAAGGGTGAACTGGTTGTGAATGGAAGAATTGACAGGGAACAAATATGCGCTGAAAGCTCCAGTTGTCTTTTACCACTACAAGTTGTTATTGAGGATCCTTTGCAGCTTCACCGTGTTGAGATAGAGATACAGGATGTTAATGATAACTCACCAAATTTTCACACAAAAGACGCAACGTTAAAAGTAGCAGAGTCAGTAGCTCTAGGAGCTCGATTTTCATTGGAAAGTGCTGAAGATTTAGATGTTGGGAGCAATAGTTTAAGCTCTTATTCGCTAAGCAGAAACGAGTTTTTCCGTCTAAACGTGAAAACTCTAAAGGATGGAAGGAAAGTACCCGAACTGGTCGTCGACAAGCCTCTTGATAGAGAGAAGCAGTCTGTTCACAAGCTAATATTAACAGCTTTGGATGGTGGAAATCCGGTAAAATCTGGCACTGCTTTGTTACAGATATTTGTACAAGATGTTAACGACAATGAACCTAAATTTGAGCTTGCAGCTTACAAAGCACATGTAACTGAAAGTGCTGTCGTTGGTTCCAGTGTTTTGACTTTAAAAGCCAGCGATTTAGACGAAGGTTTAAACggtgaaatactgtatatttttagtACACACACAACCGAGCTCGTGAAACGGGCTTTTAAAGTAAACCCCAATACTGGAGACATTACAGTGATTGGAGACTTAGATTATGAAACGACAAAGTCATACACATTTGATGTTTGTGCAAAAGATAAAGGATATCCAGAACTGGAAGGTCATTCGTCTGTTCAAATAGACATTGTTGATGAAAACGACAATGCTCCTGAAATTATTCTTACGTCGTTGCCAAACCCTGTGCCAGAAAACGCCACAGTGGGAACAGTAGTAGCTCTAATTAATGTCAGAGATTTGGACTCTGCTGAAAATGGCAAGGTGCAGTTAAATATCTCTCCTGAATTTCCTTTTAAACTGAAACCGTCTTTCGATAACCACTACTCTCTGGTAACTGGCTCAGTTTTAGACCGTGAAGATAAATCTGAATATAATGTAGAAATAGTGGCACACGATTCTGGCGTGCCATctttaaaaacaactaaatttGTCCATGTTAAAGTTCTCGATGTAAACGATAATCGTCCAGCATTCTCCCAGTCCTCTTACAGCGTGTATGTAAAAGAGAATAACCCAGCTGGGGGCTCACTGTTCTCAGTGACAGCAGTTGACATTGACAAAGACAAGAACGCCATGCTCACATACTCGATCGTGGAGTTACATCTGAATAAAGTTCCAATGTCttcttatttttacattaactctGAAAATGGCACAATTTACAGCATGAGCACGTTTGACTATGAAAAGTTGAAAATGCTAAACGTTGTTGTACAAGCAAAAGATCATGGCTCTCCGTCTCTTAGCAGCAACACCAcaattcatgtttttattctggACCAAAATGACAATGCCCCCGCTGTCATTTACCCCTCTGCAGTCATTGGATCTGTCTCTCATCAGAGGATACCCCGCACCGCTAAAGCTGGACATCTTGTTACTAAAGTCACAGCAGTGGACGCTGACTCGGGCCATAACGCCTGGATTTCCTATAGGCTCGCGGAGGCTACGGACGCGTCTATGTTCAGCGTCAATTTACACACAGGAGAAGTGAGGACTAAACGCTCGCTTTCAGAGCAGGATGACTCTTCTCAGAGGCTGCTTATAGAGATACAGGACAACGGAGAACCAGTGCAGTCCACCACAGTCACAGTGGATGTGCTGATTGAGGACGGCTTTCATGAGCCCATCTCAGACTATCGTAAGAAATCCACAGAACTCAATAAGAAAAGTGGTAAAATCACACTTTATCTGATCATCTCTCTCGCCTCTGTGTCTTTACTGTGTTTGATGACGTTCTTTATCTTATTGGCTAAATGTGCTCGAAACAGTAGAGGCAGCtcgagctgctgtatcagacgGAACGATTCTGGATATAAGAACCCCAACAGAAACCTGCAGATCCAGCTCAACACTGACGGACCCATTAAGTATGTTGAGGTGCTTGGAGGAGACATGATGTCTCAGAGTCAGTCCTTCGGCTCCTATCTTTCTCCAATGTCCGAATTCAGTGACTTTACCCTGGTGAAGCCCAGCAGCACTACAGATTTTACAGACACGCTCAACGTGCTGGATGCGTCGTTACCTGACAGCACGTGGACGTTTGAGAGTCAGCAGGTGAGATAG

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236690 lncRNA upstream 323495 10675716 ~ 10676001 (+) True G174813
TU236689 lncRNA upstream 328325 10670898 ~ 10671171 (+) True G174812
TU236688 lncRNA upstream 332316 10666950 ~ 10667180 (+) True G174811
TU236687 lncRNA upstream 334068 10665077 ~ 10665428 (+) True G174810
TU236686 lncRNA upstream 336002 10661290 ~ 10663494 (+) True G174809
TU236899 lncRNA downstream 84822 11087719 ~ 11088839 (+) True G174930
XR_002651422.1 lncRNA downstream 90820 11093717 ~ 11095900 (+) True LOC103022678
TU236916 lncRNA downstream 134652 11137549 ~ 11137957 (+) True G174944
TU236938 lncRNA downstream 187584 11190481 ~ 11265122 (+) True G174964
TU236962 lncRNA downstream 398496 11401393 ~ 11401613 (+) True G174983
XM_022681050.1 mRNA upstream 160918 10830728 ~ 10838578 (+) True LOC107197471
XM_022681536.1 mRNA upstream 169447 10826422 ~ 10830049 (+) True LOC111195105
XM_022681535.1 mRNA upstream 173244 10821523 ~ 10826252 (+) True LOC103021388
XM_007237782.3 mRNA upstream 182103 10780796 ~ 10817393 (+) True LOC103026865
XM_022681534.1 mRNA upstream 241094 10756715 ~ 10758402 (+) True LOC103029876
XM_007231161.3 mRNA downstream 78995 11081892 ~ 11084647 (+) True LOC103022370
XM_022681052.1 mRNA downstream 110918 11113815 ~ 11125744 (+) True LOC103029829
XM_015608815.2 mRNA downstream 110918 11113815 ~ 11125744 (+) False LOC103029829
XM_007231185.2 mRNA downstream 152053 11154950 ~ 11158188 (+) True LOC103030157
XM_007231166.3 mRNA downstream 247478 11250375 ~ 11322335 (+) True LOC103024145
TU236173 other upstream 2446887 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 3074056 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4458364 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 5815719 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 6095851 4836714 ~ 4903645 (+) False ptbp3
TU236978 other downstream 426974 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 905975 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 905975 11908872 ~ 11913456 (+) False G175108
TU237153 other downstream 905975 11908872 ~ 11913456 (+) False G175108
TU237301 other downstream 1188493 12191390 ~ 12192751 (+) False LOC103027177

Expression Profile