RNA id: XM_022681077.1


Basic Information

Item Value
RNA id XM_022681077.1
length 1201
RNA type mRNA
GC content 0.37
exon number 1
gene id LOC111195046
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13250350 ~ 13251550 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGCAAAGACCAAGCATAAATTTGAGTGATCTTCACAGATATGCTGACATTCAATAGTGAACTTTTTCCTTATTCAATAACTGACACACTTTCACTGATTCTATCCGTtacattataacaaaaaattGTGATATAACAGAATGCattctaaaacaaacaaaacttttCTTTCTCATTGGTAAAGGCAGATGGCTGCTAACATGACCTCCATGCAGTCAGTTTCTTCAACCAACACAACATTTATTCGTCCCTCCAGCTTTTACATTACCGGACTTTACAACATCCCACATGCAAAGTACTACTATGTGTTTCTGTGCTTTGTGTATGCAGTGACTTTGTTGGGGAACTCTTTTATAATGGGCACCATATACCTGGCACGAAGCTTGCATACAGCTAAGTATATAGCCGTCTTCAATTTGGCCTTTTCTGATCTGTGTGGAAGTTCTGCTCTTATTCCAAAGCTTCTGGACATGTTTCTGTTTGAGAACCAGTCCATTTCTTATGAAGCCTGTCtaacaaacatgttttttgtttatttttttatgactcTGCAGTCTCTCACCTTGCTTGCTATGGCCTACGATAGGTTAATTGCCATATGCTTTCCTTTAAGATATCATGCAATTGTCACCAAAACAACAATGACTTTGATCATTGGTGTAATGTGGATATTGTCTATGAGTGTCAATGCTCTGCTGGTAGCTCTGGTTACCAGGTTGTCCTTCTGTAGATCCACTACAGTTAACAGCTATTTCTGTGATCATGGGCCTATCTATAAGCTAGCCTGTAATGATAACTCTATTAATTCCATAATGGGTTATGTCTGTACTGCTGCACTTCTTTATATTCCATTGATACTTATTGCTCTTTCATATGTTTGTATCCGTTTTGCACTTAAGAAAATCTCACATGGTGTTGAGCGAATCAAAGCTATGAAAACTTGCACCTCCCATCTCATATTAGTAGCCATGTTTTATTTACCAATAATTGGTGTTTACACTGCAGCTCTAACAACATCTTTAAATACTAATATCAGAATAATCAATACTGCCCTAACACAAACTATTCCACCCATGTTAAACCCCATCATATACACACTAAAGACGGAGGAGGTTTCACAGTCTATTAAAGCTCTCTACAAACGAAGCAAAGTGAACTCTGTAATGCAAACAGCTGTCCAAAACAGTTCAAGTAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237900 lncRNA upstream 67302 13053699 ~ 13183048 (+) True G175665
TU237906 lncRNA upstream 180649 13064228 ~ 13069701 (+) True G175671
TU237899 lncRNA upstream 188264 13053699 ~ 13062086 (+) False G175665
TU237841 lncRNA upstream 350330 12899611 ~ 12900020 (+) True G175645
TU237840 lncRNA upstream 351182 12898879 ~ 12899168 (+) True G175644
TU238033 lncRNA downstream 33387 13284937 ~ 13285718 (+) True G175763
TU238050 lncRNA downstream 61504 13313054 ~ 13315228 (+) True G175771
TU238059 lncRNA downstream 81171 13332721 ~ 13336148 (+) True G175779
TU238110 lncRNA downstream 131739 13383289 ~ 13384619 (+) True G175824
TU238095 lncRNA downstream 134682 13386232 ~ 13388819 (+) True G175810
XM_007235415.3 mRNA upstream 6661 13242249 ~ 13243689 (+) True LOC103042312
XM_015601937.2 mRNA upstream 27662 13220973 ~ 13222688 (+) True LOC103021350
XM_022681540.1 mRNA upstream 34031 13215309 ~ 13216319 (+) True LOC103047635
XM_022681075.1 mRNA upstream 60433 13185677 ~ 13189917 (+) True LOC111195044
XM_007235433.3 mRNA upstream 103516 13144123 ~ 13146834 (+) True LOC103047318
XM_007235436.2 mRNA downstream 9538 13261088 ~ 13262232 (+) True LOC103021665
XM_022681541.1 mRNA downstream 41748 13293298 ~ 13329018 (+) True LOC103028411
XM_022681081.1 mRNA downstream 102218 13353768 ~ 13416255 (+) False LOC111195048
XM_007259409.3 mRNA downstream 322918 13574468 ~ 13584407 (+) False LOC103033364
XM_007259407.3 mRNA downstream 322919 13574469 ~ 13585349 (+) True LOC103033364
TU237508 other upstream 505297 12739503 ~ 12745053 (+) True G175379
TU237308 other upstream 1040901 12191390 ~ 12209449 (+) True LOC103027177
TU237301 other upstream 1057599 12191390 ~ 12192751 (+) False LOC103027177
TU237152 other upstream 1336894 11908872 ~ 11913456 (+) False G175108
TU238049 other downstream 69234 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 137776 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other downstream 159560 13411110 ~ 13418416 (+) False LOC111195048
TU238204 other downstream 427809 13679359 ~ 13685563 (+) True G175900
XR_002651440.1 other downstream 595712 13847262 ~ 13868855 (+) False prdm15

Expression Profile